Rh2AG337900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002484
Physical Location & Seq
Forward (+)
48997889 .. 48998553
665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG337900.1

Sequence Viewer

Length: 483 bp
ATGATGGCGATGGTGAATGTAAGCCAACGCAAGACGAAAAGGCAAAGCGAGAAGATGTCTCTGGAAGACTACCTCCTTCTCATTCAGTCTCGCTCCAACCTCCACCTCACCGTCACTCACCTCAATCAGATCATCAGCATGCACGGATTCAAAAAACTTCACAGACTTCACAAGAAAGTTCTGAGCGACGCCGTGAGCACACTTGACCTGGTGGAACCGAGCCGCTCTACGCTCCGGGACTACATCTCGCCGCCGGTCAACACTTTTCTGAACGACGTCGTCGCGGACATGAACGACCTGAGCTGGCAGGAGTGCTGCGTCACCGCCATCAAAACGCTGAGCTCGTGTCAACTAAACGACGCCGTCGAGTGCTCGAAGAGCCACCAATCGCCTCCCACGGCTCTGGATTCCCACGGCGGCGGCGTTTCCGGTACTACATTTCAGGGAAGGGCTGAACCATTGGGGAAACTGGTGCAGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.82

Weight (kDa)

8.39

Isoelectric Point (pI)

62.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7787 PF25042 16 - 71 7.5e-27 Domain of unknown function (DUF7787)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
AccBSI CCGCTC 1 cut(s) 225
AccII CGCG 1 cut(s) 284
AciI CCGC 6 cut(s) 223, 251, 284, 324, 417, 420
AcyI GRCGYC 3 cut(s) 189, 276, 360
AfaI GTAC 1 cut(s) 433
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 2 cut(s) 303, 342
AluI AGCT 2 cut(s) 303, 342
Alw21I GWGCWC 3 cut(s) 200, 344, 374
Alw26I GTCTC 2 cut(s) 63, 93
ApeKI GCWGC 1 cut(s) 315
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 4 cut(s) 25, 100, 110, 313
BanII GRGCYC 1 cut(s) 344
BauI CACGAG 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 3 cut(s) 200, 344, 374
BbvI GCAGC 1 cut(s) 302
BccI CCATC 2 cut(s) 4, 335
BceAI ACGGC 4 cut(s) 176, 347, 414, 430
BciT130I CCWGG 1 cut(s) 209
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 63, 93
BisI GCNGC 5 cut(s) 223, 251, 316, 418, 421
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 5 cut(s) 224, 252, 317, 419, 422
Bme1390I CCNGG 2 cut(s) 209, 236
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 2 cut(s) 209, 236
BpiI GAAGAC 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 299
Bpu1102I GCTNAGC 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 236
BsaHI GRCGYC 3 cut(s) 189, 276, 360
BsaJI CCNNGG 2 cut(s) 396, 412
BsaWI WCCGGW 1 cut(s) 428
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 474
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 396, 412
BseMII CTCAG 3 cut(s) 173, 290, 329
BseNI ACTGG 1 cut(s) 474
BseXI GCAGC 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 284
BsiHKAI GWGCWC 3 cut(s) 200, 344, 374
BsiSI CCGG 3 cut(s) 235, 254, 429
BslFI GGGAC 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 63, 93
BsmFI GGGAC 1 cut(s) 251
Bsp1286I GDGCHC 3 cut(s) 200, 344, 374
Bsp143I GATC 1 cut(s) 129
Bsp1720I GCTNAGC 1 cut(s) 338
BspACI CCGC 6 cut(s) 223, 251, 284, 324, 417, 420
BspCNI CTCAG 3 cut(s) 174, 291, 330
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 216
BspQI GCTCTTC 1 cut(s) 371
BsrBI CCGCTC 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 1 cut(s) 474
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 396, 412
BssMI GATC 1 cut(s) 129
BssNI GRCGYC 3 cut(s) 189, 276, 360
BssSI CACGAG 1 cut(s) 343
Bst2BI CACGAG 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 371
BstACI GRCGYC 3 cut(s) 189, 276, 360
BstC8I GCNNGC 2 cut(s) 140, 305
BstDEI CTNAG 3 cut(s) 182, 299, 338
BstDSI CCRYGG 2 cut(s) 396, 412
BstFNI CGCG 1 cut(s) 284
BstKTI GATC 1 cut(s) 132
BstMAI GTCTC 2 cut(s) 63, 93
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 378
BstNI CCWGG 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 2 cut(s) 207, 234
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 72
BstXI CCANNNNNNTGG 1 cut(s) 403
BtgI CCRYGG 2 cut(s) 396, 412
BtgZI GCGATG 1 cut(s) 23
BtsI GCAGTG 1 cut(s) 482
BtsIMutI CAGTG 1 cut(s) 482
Cac8I GCNNGC 2 cut(s) 140, 305
Cfr10I RCCGGY 1 cut(s) 253
CseI GACGC 3 cut(s) 197, 307, 368
CsiI ACCWGGT 1 cut(s) 207
Csp6I GTAC 1 cut(s) 432
CviAII CATG 2 cut(s) 139, 289
CviJI RGCY 7 cut(s) 24, 222, 303, 342, 381, 401, 452
CviKI_1 RGCY 7 cut(s) 24, 222, 303, 342, 381, 401, 452
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 3 cut(s) 182, 299, 338
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 371
EarI CTCTTC 1 cut(s) 371
Ecl136II GAGCTC 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 344
Eco53kI GAGCTC 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 344
FaeI CATG 2 cut(s) 142, 292
FaiI YATR 2 cut(s) 140, 290
FaqI GGGAC 1 cut(s) 251
FatI CATG 2 cut(s) 138, 288
Fnu4HI GCNGC 5 cut(s) 223, 251, 316, 418, 421
FriOI GRGCYC 1 cut(s) 344
Fsp4HI GCNGC 5 cut(s) 223, 251, 316, 418, 421
GluI GCNGC 5 cut(s) 223, 251, 316, 418, 421
HapII CCGG 3 cut(s) 235, 254, 429
HgaI GACGC 3 cut(s) 197, 307, 368
Hin1I GRCGYC 3 cut(s) 189, 276, 360
Hin1II CATG 2 cut(s) 142, 292
HincII GTYRAC 2 cut(s) 259, 350
HindII GTYRAC 2 cut(s) 259, 350
HinfI GANTC 2 cut(s) 147, 407
HpaII CCGG 3 cut(s) 235, 254, 429
HphI GGTGA 4 cut(s) 25, 100, 110, 313
Hpy166II GTNNAC 2 cut(s) 259, 350
Hpy188I TCNGA 3 cut(s) 129, 183, 270
Hpy188III TCNNGA 2 cut(s) 62, 404
Hpy8I GTNNAC 2 cut(s) 259, 350
Hpy99I CGWCG 6 cut(s) 191, 278, 281, 284, 362, 368
HpyAV CCTTC 2 cut(s) 86, 441
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 142, 475
HpyF10VI GCNNNNNNNGC 1 cut(s) 378
HpyF3I CTNAG 3 cut(s) 182, 299, 338
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 3 cut(s) 189, 276, 360
Hsp92II CATG 2 cut(s) 142, 292
Kzo9I GATC 1 cut(s) 129
LguI GCTCTTC 1 cut(s) 371
LmnI GCTCC 2 cut(s) 98, 237
Lsp1109I GCAGC 1 cut(s) 302
MabI ACCWGGT 1 cut(s) 207
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 112, 319
MalI GATC 1 cut(s) 131
MbiI CCGCTC 1 cut(s) 225
MboI GATC 1 cut(s) 129
MboII GAAGA 3 cut(s) 64, 77, 388
MhlI GDGCHC 3 cut(s) 200, 344, 374
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 5 cut(s) 83, 110, 116, 131, 402
MslI CAYNNNNRTG 1 cut(s) 137
MspI CCGG 3 cut(s) 235, 254, 429
MspR9I CCNGG 2 cut(s) 209, 236
MvaI CCWGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 378
NciI CCSGG 1 cut(s) 236
NdeII GATC 1 cut(s) 129
NlaIII CATG 2 cut(s) 142, 292
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 2 cut(s) 112, 319
NspI RCATGY 1 cut(s) 142
PaeI GCATGC 1 cut(s) 142
PciSI GCTCTTC 1 cut(s) 371
PcsI WCGNNNNNNNCGW 3 cut(s) 341, 363, 420
PfeI GAWTC 2 cut(s) 147, 407
PflFI GACNNNGTC 2 cut(s) 278, 362
PfoI TCCNGGA 1 cut(s) 234
PkrI GCNGC 5 cut(s) 224, 252, 317, 419, 422
Psp124BI GAGCTC 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 216
PsyI GACNNNGTC 2 cut(s) 278, 362
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
RseI CAYNNNNRTG 1 cut(s) 137
SacI GAGCTC 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 371
SatI GCNGC 5 cut(s) 223, 251, 316, 418, 421
Sau3AI GATC 1 cut(s) 129
ScrFI CCNGG 2 cut(s) 209, 236
SduI GDGCHC 3 cut(s) 200, 344, 374
SetI ASST 9 cut(s) 75, 102, 108, 123, 210, 279, 300, 305, 344
SexAI ACCWGGT 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 137
SphI GCATGC 1 cut(s) 142
SsiI CCGC 6 cut(s) 223, 251, 284, 324, 417, 420
SstI GAGCTC 1 cut(s) 344
StyD4I CCNGG 2 cut(s) 207, 234
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 366, 374
TauI GCSGC 4 cut(s) 225, 253, 420, 423
TfiI GAWTC 2 cut(s) 147, 407
TscAI CASTG 1 cut(s) 482
TseFI GTSAC 2 cut(s) 112, 319
TseI GCWGC 1 cut(s) 315
Tsp45I GTSAC 2 cut(s) 112, 319
TspDTI ATGAA 1 cut(s) 305
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 1 cut(s) 482
Tth111I GACNNNGTC 2 cut(s) 278, 362
XceI RCATGY 1 cut(s) 142
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.