Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001682

Physical Location & Seq

Genomic Coordinates Forward (+)

15853747 .. 15856556

Gene Structure 2810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G145100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTTATACAAGGAGTATGACTATGTAGCATCAATGAGATTACAATTCTTAGCTTCACAGCGCAGGCGTGCAGAACAGTTCACAGTAGTGGTTAGGAGTATACCACACGTCTCTGGTTGCTCAGTATCAGAAACTGTGGACCACTTCTTTCAGACGAACCACCCGAGTAATTATCTTTGTCATCAGGCAGTGTACAAAGCAAACAAATTTGCCAAACTTGCGAGAAAGCGAGATAGGCTCCAAAATTGGCTAGACTATAACCTGCTTAAGTTCGAAAGGAAGCAATGGCAAAAGACAATGGAGCAAACTGCGGAACCTGACCTAAATTTGAAGTCATACTTGGCCGATGCCTACTTGCACCCCATTTTCCGGTCATTCGAGGAACAGGAGTTGGTTGAAGTTAGTGTAGACAAGCATCAAACTCTTGCTGCCACTCCCATAACAAGCGAACTCAGTTCCCCCTCTCCGCCCCATTACGCCCGTCAGACACCCCCATCTTCTCCCCAATCTGCCCACTATCAATCATCTCCACCCCAGTACGTCTATAATTCAAACTCCTCCCAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

190

Amino Acids

22.0

Weight (kDa)

8.79

Isoelectric Point (pI)

66.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32090
fragaria_vesca	FvH4_3g01530 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560
malus_domestica	MD06G1023400.v1.1
prunus_persica	Prupe.3G145100_v2.0.a1 Prupe.5G024400_v2.0.a1 Prupe.5G024400_v2.0.a1
pyrus_communis	pycom03g21460 pycom06g01880
rosa_chinensis	RchiOBHm_Chr2g0130361 RchiOBHm_Chr7g0212871
rosa_laevigata	RLG00000002863 RLG00000036352
rosa_multiflora	Rmu_sc0000394.1_g000051 Rmu_sc0000394.1_g000052 Rmu_sc0017945.1_g000005
rosa_roxburghii	Rroxscaffold_2G00133450 Rroxscaffold_2G00135350 Rroxscaffold_3G00246490 Rroxscaffold_4G00293800 Rroxscaffold_4G00312360 Rroxscaffold_4G00322900 Rroxscaffold_5G00343810 Rroxscaffold_5G00343840 Rroxscaffold_5G00352480 Rroxscaffold_7G00204210
rosa_rugosa	Rorug07G0137200 Rorug07G0137300
rosa_samantha	Rh2BG351500 Rh4AG085800 Rh4CG093500 Rh4DG116200 Rh5AG424600 Rh7AG268800 Rh7BG264400 Rh7CG287800 Rh7DG276900 Rh7DG324500
rosa_wichuraiana	Rw2G028960 Rw4G010010 Rw4G015390 Rw5G037750 Rw7G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	270
AccI	GTMKAC	2 cut(s)	100, 408
AciI	CCGC	2 cut(s)	311, 467
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	206, 325
AfaI	GTAC	2 cut(s)	194, 539
AfiI	CCNNNNNNNGG	1 cut(s)	369
AflII	CTTAAG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	106
AgsI	TTSAA	3 cut(s)	331, 398, 552
AjiI	CACGTC	1 cut(s)	109
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	115
AlwNI	CAGNNNCTG	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	2 cut(s)	206, 325
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	139
AsuII	TTCGAA	1 cut(s)	273
AvaI	CYCGRG	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	251
BfrI	CTTAAG	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	270
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme18I	GGWCC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	163
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	239, 315
BmrI	ACTGGG	2 cut(s)	529, 556
BmsI	GCATC	3 cut(s)	38, 337, 424
BmuI	ACTGGG	2 cut(s)	529, 556
BplI	GAGNNNNNCTC	2 cut(s)	222, 254
Bpu14I	TTCGAA	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	2 cut(s)	535, 562
Bse3DI	GCAATG	1 cut(s)	290
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	2 cut(s)	135, 466
BseNI	ACTGG	2 cut(s)	535, 562
BseRI	GAGGAG	1 cut(s)	547
BseXI	GCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	344
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	344
BsoBI	CYCGRG	1 cut(s)	163
Bsp119I	TTCGAA	1 cut(s)	273
Bsp1407I	TGTACA	1 cut(s)	192
BspACI	CCGC	2 cut(s)	311, 467
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	2 cut(s)	134, 465
BspLI	GGNNCC	2 cut(s)	239, 315
BspMI	ACCTGC	1 cut(s)	270
BspT104I	TTCGAA	1 cut(s)	273
BspTI	CTTAAG	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	535, 562
BssNAI	GTATAC	1 cut(s)	101
Bst1107I	GTATAC	1 cut(s)	101
Bst4CI	ACNGT	3 cut(s)	78, 85, 136
BstAFI	CTTAAG	1 cut(s)	266
BstAUI	TGTACA	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	65, 69
BstDEI	CTNAG	3 cut(s)	49, 121, 452
BstHHI	GCGC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 235
BstV1I	GCAGC	1 cut(s)	415
BstZ17I	GTATAC	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	344
BtrI	CACGTC	1 cut(s)	109
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	65, 69
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	193, 538
CviJI	RGCY	4 cut(s)	53, 238, 250, 344
CviKI_1	RGCY	4 cut(s)	53, 238, 250, 344
CviQI	GTAC	2 cut(s)	193, 538
DdeI	CTNAG	3 cut(s)	49, 121, 452
EaeI	YGGCCR	1 cut(s)	342
EciI	GGCGGA	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	115
FaiI	YATR	9 cut(s)	7, 18, 24, 101, 258, 337, 440, 546, 568
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FblI	GTMKAC	2 cut(s)	100, 408
Fnu4HI	GCNGC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	1 cut(s)	370
HhaI	GCGC	1 cut(s)	63
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	370
Hpy166II	GTNNAC	5 cut(s)	81, 101, 139, 193, 409
Hpy188I	TCNGA	3 cut(s)	130, 153, 486
Hpy8I	GTNNAC	5 cut(s)	81, 101, 139, 193, 409
HpyCH4III	ACNGT	3 cut(s)	78, 85, 136
HpyCH4IV	ACGT	2 cut(s)	108, 540
HpyCH4V	TGCA	2 cut(s)	71, 358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 235
HpyF3I	CTNAG	3 cut(s)	49, 121, 452
HpySE526I	ACGT	2 cut(s)	108, 540
HspAI	GCGC	1 cut(s)	61
LmnI	GCTCC	2 cut(s)	243, 301
LpnPI	CCDG	8 cut(s)	49, 99, 170, 275, 330, 371, 383, 548
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	3 cut(s)	38, 337, 424
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	2 cut(s)	108, 540
MboII	GAAGA	1 cut(s)	489
MluCI	AATT	6 cut(s)	44, 169, 206, 244, 325, 547
MnlI	CCTC	3 cut(s)	373, 472, 568
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	86
MspCI	CTTAAG	1 cut(s)	266
MspI	CCGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	2 cut(s)	218, 235
NlaIV	GGNNCC	2 cut(s)	239, 315
NspV	TTCGAA	1 cut(s)	273
OliI	CACNNNNGTG	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	239, 315
PspPI	GGNCC	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	194, 539
RsaNI	GTAC	2 cut(s)	193, 538
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	429
Sau96I	GGNCC	1 cut(s)	139
SetI	ASST	6 cut(s)	55, 111, 264, 319, 324, 543
SfaNI	GCATC	3 cut(s)	38, 337, 424
SfuI	TTCGAA	1 cut(s)	273
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	6 cut(s)	44, 169, 206, 244, 325, 547
SsiI	CCGC	2 cut(s)	311, 467
SspMI	CTAG	1 cut(s)	251
TaaI	ACNGT	3 cut(s)	78, 85, 136
TaiI	ACGT	2 cut(s)	111, 543
TaqI	TCGA	2 cut(s)	273, 378
TasI	AATT	6 cut(s)	44, 169, 206, 244, 325, 547
TatI	WGTACW	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	1 cut(s)	428
TspRI	CASTG	1 cut(s)	195
Vha464I	CTTAAG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	2 cut(s)	206, 325
XmiI	GTMKAC	2 cut(s)	100, 408
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.