Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017945.1

Orthogroup ID

OG0001682

Physical Location & Seq

Genomic Coordinates Reverse (-)

22476 .. 23131

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017945.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgcagatcataaatgtttacatccaggaatatgaaagtgctgcagcatactggcctgatgtccatggtcgcattctgtctgcattgcttatctctcaactggttctattgggattgttgagtaccaaaaaagctgctcagtctacaccatttcttcttgcacttccagtattgaccatagcgttctataagtattgccaaggtcgttttgaacctgcatttgttagatatccattacaggaagcaaggatgaaagatactctggaacaagtaagagaaccaaacttgaacttgaaaggctacctccaaagcgcatatgtccatccagtttttaaagagtgcgatgaagatgatgatgatgatgaccattactcgtttgaaaagtacgaaaatgagagcgtgacgactgtggccacaaaacgccaatcccggcggaacaccccggtgcctagcagaatgactggtggatccacgccctcgttgccagaagctgttgaagatctacagccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005227 GO:0005261 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008324 GO:0009628 GO:0009987 GO:0010959 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016043 GO:0022607 GO:0022803 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0032879 GO:0033554 GO:0034220 GO:0043269 GO:0043933 GO:0044085 GO:0044464 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051259 GO:0051262 GO:0051716 GO:0051924 GO:0055085 GO:0065003 GO:0065007 GO:0071214 GO:0071470 GO:0071474 GO:0071840 GO:0071944 GO:0090279 GO:0098655 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

170

Amino Acids

19.35

Weight (kDa)

5.08

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32090
fragaria_vesca	FvH4_3g01530 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560
malus_domestica	MD06G1023400.v1.1
prunus_persica	Prupe.3G145100_v2.0.a1 Prupe.5G024400_v2.0.a1 Prupe.5G024400_v2.0.a1
pyrus_communis	pycom03g21460 pycom06g01880
rosa_chinensis	RchiOBHm_Chr2g0130361 RchiOBHm_Chr7g0212871
rosa_laevigata	RLG00000002863 RLG00000036352
rosa_multiflora	Rmu_sc0000394.1_g000051 Rmu_sc0000394.1_g000052 Rmu_sc0017945.1_g000005
rosa_roxburghii	Rroxscaffold_2G00133450 Rroxscaffold_2G00135350 Rroxscaffold_3G00246490 Rroxscaffold_4G00293800 Rroxscaffold_4G00312360 Rroxscaffold_4G00322900 Rroxscaffold_5G00343810 Rroxscaffold_5G00343840 Rroxscaffold_5G00352480 Rroxscaffold_7G00204210
rosa_rugosa	Rorug07G0137200 Rorug07G0137300
rosa_samantha	Rh2BG351500 Rh4AG085800 Rh4CG093500 Rh4DG116200 Rh5AG424600 Rh7AG268800 Rh7BG264400 Rh7CG287800 Rh7DG276900 Rh7DG324500
rosa_wichuraiana	Rw2G028960 Rw4G010010 Rw4G015390 Rw5G037750 Rw7G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	143
AciI	CCGC	1 cut(s)	433
AclWI	GGATC	2 cut(s)	462, 475
AcoI	YGGCCR	1 cut(s)	411
AfaI	GTAC	2 cut(s)	124, 386
AgsI	TTSAA	5 cut(s)	212, 289, 295, 380, 497
AjnI	CCWGG	1 cut(s)	24
AleI	CACNNNNGTG	1 cut(s)	443
AluBI	AGCT	2 cut(s)	134, 491
AluI	AGCT	2 cut(s)	134, 491
AlwI	GGATC	2 cut(s)	462, 475
AlwNI	CAGNNNCTG	1 cut(s)	491
AoxI	GGCC	2 cut(s)	53, 411
ApeKI	GCWGC	3 cut(s)	41, 44, 134
AspLEI	GCGC	1 cut(s)	314
AsuC2I	CCSGG	2 cut(s)	430, 443
BalI	TGGCCA	1 cut(s)	413
BamHI	GGATCC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	445
BbvI	GCAGC	3 cut(s)	28, 56, 121
BccI	CCATC	1 cut(s)	330
BciT130I	CCWGG	1 cut(s)	26
BcnI	CCSGG	2 cut(s)	430, 443
BfaI	CTAG	1 cut(s)	450
BfmI	CTRYAG	2 cut(s)	42, 503
BfuAI	ACCTGC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	3 cut(s)	42, 45, 135
BlsI	GCNGC	3 cut(s)	43, 46, 136
Bme1390I	CCNGG	3 cut(s)	26, 430, 443
BmiI	GGNNCC	2 cut(s)	447, 469
BmrFI	CCNGG	3 cut(s)	26, 430, 443
BpuMI	CCSGG	2 cut(s)	430, 443
BsaJI	CCNNGG	3 cut(s)	64, 199, 441
Bse1I	ACTGG	5 cut(s)	56, 105, 167, 326, 466
Bse3DI	GCAATG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	3 cut(s)	64, 199, 441
BseGI	GGATG	3 cut(s)	21, 255, 322
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	5 cut(s)	56, 105, 167, 326, 466
BseXI	GCAGC	3 cut(s)	28, 56, 121
BshFI	GGCC	2 cut(s)	55, 413
BshNI	GGYRCC	1 cut(s)	445
BsiSI	CCGG	2 cut(s)	430, 443
BsmI	GAATGC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	55, 413
Bsp143I	GATC	3 cut(s)	6, 467, 499
Bsp19I	CCATGG	1 cut(s)	64
BspACI	CCGC	1 cut(s)	433
BspANI	GGCC	2 cut(s)	55, 413
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	447, 469
BspMAI	CTGCAG	1 cut(s)	46
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	2 cut(s)	462, 475
BspT107I	GGYRCC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	83
BsrI	ACTGG	5 cut(s)	56, 105, 167, 326, 466
BssECI	CCNNGG	3 cut(s)	64, 199, 441
BssMI	GATC	3 cut(s)	6, 467, 499
BssT1I	CCWWGG	2 cut(s)	64, 199
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	409
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	3 cut(s)	21, 255, 322
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	3 cut(s)	9, 470, 502
BstMBI	GATC	3 cut(s)	6, 467, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	3 cut(s)	24, 428, 441
BstSFI	CTRYAG	2 cut(s)	42, 503
BstV1I	GCAGC	3 cut(s)	28, 56, 121
BstX2I	RGATCY	2 cut(s)	467, 499
BstYI	RGATCY	2 cut(s)	467, 499
BsuRI	GGCC	2 cut(s)	55, 413
BtgI	CCRYGG	1 cut(s)	64
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	3 cut(s)	21, 255, 322
BveI	ACCTGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	491
CfoI	GCGC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	123, 385
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	6 cut(s)	55, 134, 300, 413, 491, 508
CviKI_1	RGCY	6 cut(s)	55, 134, 300, 413, 491, 508
CviQI	GTAC	2 cut(s)	123, 385
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	3 cut(s)	8, 469, 501
DpnII	GATC	3 cut(s)	6, 467, 499
DraI	TTTAAA	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	448
Eco130I	CCWWGG	2 cut(s)	64, 199
Eco32I	GATATC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	230
EcoT14I	CCWWGG	2 cut(s)	64, 199
ErhI	CCWWGG	2 cut(s)	64, 199
FaeI	CATG	1 cut(s)	68
FaiI	YATR	8 cut(s)	11, 33, 49, 66, 179, 189, 316, 318
FatI	CATG	1 cut(s)	64
FauNDI	CATATG	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	3 cut(s)	42, 45, 135
FokI	GGATG	3 cut(s)	8, 262, 309
Fsp4HI	GCNGC	3 cut(s)	42, 45, 135
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	3 cut(s)	42, 45, 135
HaeIII	GGCC	2 cut(s)	55, 413
HapII	CCGG	2 cut(s)	430, 443
HhaI	GCGC	1 cut(s)	314
Hin1II	CATG	1 cut(s)	68
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HpaII	CCGG	2 cut(s)	430, 443
Hpy166II	GTNNAC	2 cut(s)	19, 144
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	2 cut(s)	19, 144
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	5 cut(s)	4, 44, 83, 161, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	68
HspAI	GCGC	1 cut(s)	312
Kzo9I	GATC	3 cut(s)	6, 467, 499
Lsp1109I	GCAGC	3 cut(s)	28, 56, 121
MaeI	CTAG	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	3 cut(s)	8, 469, 501
MboI	GATC	3 cut(s)	6, 467, 499
MboII	GAAGA	3 cut(s)	146, 359, 509
MflI	RGATCY	2 cut(s)	467, 499
MlsI	TGGCCA	1 cut(s)	413
MluNI	TGGCCA	1 cut(s)	413
MnlI	CCTC	2 cut(s)	314, 487
Mox20I	TGGCCA	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	413
MspI	CCGG	2 cut(s)	430, 443
MspR9I	CCNGG	3 cut(s)	26, 430, 443
Mva1269I	GAATGC	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	481
NciI	CCSGG	2 cut(s)	430, 443
NcoI	CCATGG	1 cut(s)	64
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	3 cut(s)	6, 467, 499
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	2 cut(s)	447, 469
NmuCI	GTSAC	1 cut(s)	400
OliI	CACNNNNGTG	1 cut(s)	443
PctI	GAATGC	1 cut(s)	72
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	3 cut(s)	43, 46, 136
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	447, 469
PstI	CTGCAG	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	2 cut(s)	467, 499
RsaI	GTAC	2 cut(s)	124, 386
RsaNI	GTAC	2 cut(s)	123, 385
RseI	CAYNNNNRTG	1 cut(s)	443
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	3 cut(s)	42, 45, 135
Sau3AI	GATC	3 cut(s)	6, 467, 499
ScrFI	CCNGG	3 cut(s)	26, 430, 443
SetI	ASST	5 cut(s)	136, 205, 217, 306, 493
SfcI	CTRYAG	2 cut(s)	42, 503
SmiMI	CAYNNNNRTG	1 cut(s)	443
SsiI	CCGC	1 cut(s)	433
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	24, 428, 441
StyI	CCWWGG	2 cut(s)	64, 199
TaaI	ACNGT	1 cut(s)	409
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	3 cut(s)	41, 44, 134
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	3 cut(s)	48, 266, 360
XmiI	GTMKAC	1 cut(s)	143
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.