Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001682

Physical Location & Seq

Genomic Coordinates Forward (+)

39088249 .. 39104648

Gene Structure 16400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG324500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAGGTTGAAATTCTTAGCTTCACAGCGCAGGCGTGCAGAACAGTTCACGGTAGTGGTTAGAAACATACCATATGTCTCTGGTCGTTCAATATCAGACACTGTGGACCAATACTTCAAAAGAAACCACCCGAATGAGTATCTTTGTCACCAGGCAGTCTACAATGCAAACAAATTTGCCAGACTTGTGAGACAGCGAGATCGGATCCAAAACTGGCTAGACTATTACCAGCTTAAGTATGAAAGGCATCCAAACAAAAAACCAACCACAAAGGTACTGTATCCTAATCCCCTTGCAGATAGAAGGTTATACCAAAAGCTCGCCCAAAGGCTGAAGTTAAACCGTATAGACTCCTCACTTTTGGTTCAAACTAATAGCCATGGCCTTGAGAACAATGATGAGGAAGATAGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

138

Amino Acids

16.68

Weight (kDa)

9.99

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHM7_cyt	PF14703	15 - 92	2.3e-16	Cytosolic domain of 10TM putative phosphate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32090
fragaria_vesca	FvH4_3g01530 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560
malus_domestica	MD06G1023400.v1.1
prunus_persica	Prupe.3G145100_v2.0.a1 Prupe.5G024400_v2.0.a1 Prupe.5G024400_v2.0.a1
pyrus_communis	pycom03g21460 pycom06g01880
rosa_chinensis	RchiOBHm_Chr2g0130361 RchiOBHm_Chr7g0212871
rosa_laevigata	RLG00000002863 RLG00000036352
rosa_multiflora	Rmu_sc0000394.1_g000051 Rmu_sc0000394.1_g000052 Rmu_sc0017945.1_g000005
rosa_roxburghii	Rroxscaffold_2G00133450 Rroxscaffold_2G00135350 Rroxscaffold_3G00246490 Rroxscaffold_4G00293800 Rroxscaffold_4G00312360 Rroxscaffold_4G00322900 Rroxscaffold_5G00343810 Rroxscaffold_5G00343840 Rroxscaffold_5G00352480 Rroxscaffold_7G00204210
rosa_rugosa	Rorug07G0137200 Rorug07G0137300
rosa_samantha	Rh2BG351500 Rh4AG085800 Rh4CG093500 Rh4DG116200 Rh5AG424600 Rh7AG268800 Rh7BG264400 Rh7CG287800 Rh7DG276900 Rh7DG324500
rosa_wichuraiana	Rw2G028960 Rw4G010010 Rw4G015390 Rw5G037750 Rw7G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AclWI	GGATC	2 cut(s)	199, 212
AcsI	RAATTY	2 cut(s)	11, 173
AcuI	CTGAAG	1 cut(s)	353
AfaI	GTAC	1 cut(s)	276
AflII	CTTAAG	1 cut(s)	233
AgsI	TTSAA	4 cut(s)	10, 90, 118, 368
AjnI	CCWGG	1 cut(s)	150
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	3 cut(s)	20, 232, 319
AluI	AGCT	3 cut(s)	20, 232, 319
Alw26I	GTCTC	2 cut(s)	82, 184
AlwI	GGATC	2 cut(s)	199, 212
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	382
ApoI	RAATTY	2 cut(s)	11, 173
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	106
BamHI	GGATCC	1 cut(s)	204
BciT130I	CCWGG	1 cut(s)	152
BciVI	GTATCC	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	82, 184
BfaI	CTAG	1 cut(s)	218
BfrI	CTTAAG	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	291
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	384
BsmAI	GTCTC	2 cut(s)	82, 184
BsnI	GGCC	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	199, 204
Bsp19I	CCATGG	1 cut(s)	379
BspANI	GGCC	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	206
BspPI	GGATC	2 cut(s)	199, 212
BspTI	CTTAAG	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	2 cut(s)	199, 204
BssT1I	CCWWGG	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	5 cut(s)	45, 52, 103, 279, 344
BstAFI	CTTAAG	1 cut(s)	233
BstC8I	GCNNGC	3 cut(s)	32, 36, 321
BstDEI	CTNAG	1 cut(s)	16
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	202, 207
BstMAI	GTCTC	2 cut(s)	82, 184
BstMBI	GATC	2 cut(s)	199, 204
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	384
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	3 cut(s)	32, 36, 321
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	1 cut(s)	380
CviJI	RGCY	7 cut(s)	20, 217, 232, 319, 331, 378, 384
CviKI_1	RGCY	7 cut(s)	20, 217, 232, 319, 331, 378, 384
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	2 cut(s)	201, 206
DpnII	GATC	2 cut(s)	199, 204
Eco130I	CCWWGG	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	1 cut(s)	383
FaiI	YATR	7 cut(s)	68, 73, 75, 240, 310, 347, 381
FatI	CATG	1 cut(s)	379
FauNDI	CATATG	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	159
FokI	GGATG	1 cut(s)	234
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	384
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	383
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	1 cut(s)	350
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	3 cut(s)	48, 106, 160
Hpy188I	TCNGA	2 cut(s)	97, 204
Hpy8I	GTNNAC	3 cut(s)	48, 106, 160
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	5 cut(s)	45, 52, 103, 279, 344
HpyCH4V	TGCA	3 cut(s)	38, 167, 296
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	383
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	199, 204
LpnPI	CCDG	7 cut(s)	16, 66, 137, 164, 193, 199, 242
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	2 cut(s)	201, 206
MboI	GATC	2 cut(s)	199, 204
MboII	GAAGA	1 cut(s)	416
MflI	RGATCY	1 cut(s)	204
MluCI	AATT	2 cut(s)	11, 173
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	2 cut(s)	364, 394
MseI	TTAA	2 cut(s)	234, 338
MslI	CAYNNNNRTG	2 cut(s)	53, 132
MspCI	CTTAAG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	379
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	2 cut(s)	199, 204
NlaIII	CATG	1 cut(s)	383
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	146
OliI	CACNNNNGTG	1 cut(s)	53
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
RseI	CAYNNNNRTG	2 cut(s)	53, 132
SaqAI	TTAA	2 cut(s)	234, 338
Sau3AI	GATC	2 cut(s)	199, 204
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	6 cut(s)	8, 22, 234, 276, 308, 321
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	2 cut(s)	53, 132
SmlI	CTYRAG	2 cut(s)	233, 386
SmoI	CTYRAG	2 cut(s)	233, 386
Sse9I	AATT	2 cut(s)	11, 173
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	5 cut(s)	45, 52, 103, 279, 344
TasI	AATT	2 cut(s)	11, 173
Tru1I	TTAA	2 cut(s)	234, 338
Tru9I	TTAA	2 cut(s)	234, 338
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	106
Vha464I	CTTAAG	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	2 cut(s)	11, 173
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.