Rroxscaffold_5G00352480

Golgi to plasma membrane transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001682
Physical Location & Seq
Forward (+)
29525233 .. 29568148
42916 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00352480.1

Sequence Viewer

Length: 1311 bp
ATGGCCGGAGACAAGAAGAAAGATCATTCGCATGAAGACCGCTCATGTGAAGGCCGTTCGTGTCCACCAGCTCCAAAAAAGAGCCAACCTTCTCCAAGATACGATGACTCTTTTGGCGGACAAAACTTGAACACGAATTTCGACCAAGAATACATCATTCTAGAAGATTTGTACAGCAGAGTTGGTCGAGTTTTGAAAAAGATATTGGATGATCAAGTTAATATGACTTCTAAAACACAAATTTGGGAGAAAAAGATCAAGGGAGAAGCTCAAACTTTTGGTTCTAAGCAACATCACCACCAAGGTTGTCAAAGAAGATCAAGAAGGTTGAAAGAAGTTCTTAGAACGAAGGGTAGGGTTATAGCTATACTAAGTTTTAGGTTAAAGATTCTTGAAGGTGATGAAAGAAAAGGCTTAACGTGGGCTCAAAGGGGTTTATCTAGGGGAGTCCCACGACGGGCACAATTAGGGACACAAGTTTATATGGCAATGGTGGAAATTCCTATGGTGCCTCTATCCCTTCCAGAATCGGGGCCATGTTTTGCTCTTCACTTCCGCTACCAGCTTCGTAACTTGAAGATTTTTGTTCCAATGACAGTCCTAGCACTTCTTATTCTTATTCCAGTCAATGTATCGAGTGGTACCTTATTTTTCTTAAAGAAAGAGTTGGTTTTGAGTGACATTGATAGGCTCTCTATATCAAATGTGCGCCCCAAGTCAATAAGGGTAACTTATATTTATTCAGCAGTCTACAATGCAAACAAATTTGCCGGACTTGTGAGACAGCGAGATCGGATCCAAAACTGGCTAGACTATTACCAGCTTAAGTATGAAAGGCATCCAAACAAAAAACCAACCACAAAGACAGGATGTTTGGGTCTTTGCGGTAAAAGGGTTGATGCCATCGAGTACTACAAGCAACAGATTAAGTCATTTGATAAAAGAATGGCACTGGAACAAGAAAAGATTCTCAAAGACTCCAAAGCTCTTTGCCAGATTCCGAGAAACATTGGAGAGACTATACCATCAAAGGCTACTTTCTTTATTACATATATAATGGTCGATGGGTGGGCTGCAATTGCTGGTGAGATTCTCCGTTTGAAGCCATTGGTTATATTTCATCTTAAGAACATGTTCTTGGTAAAAACCGAGAGAGATAGGGAGAAGGCAACAAACCCCGGTAGTGTGGATTTTCCGAGACCCTCCCAAGTCTTCAACTATACTTCCTTCGGGGATTGTATAATCAATGTCTACAATCAACAATATGAAAGTGCTACTGCATTCGGCCACATGTTCATAGCCGCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

436

Amino Acids

50.05

Weight (kDa)

9.77

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RSN1_TM PF13967 190 - 246 3.5e-06 Late exocytosis, associated with Golgi transport
PHM7_cyt PF14703 247 - 326 1.8e-19 Cytosolic domain of 10TM putative phosphate transporter
RSN1_7TM PF02714 330 - 399 1.5e-15 Calcium-dependent channel, 7TM region, putative phosphate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 641
AccB1I GGYRCC 2 cut(s) 508, 641
AccBSI CCGCTC 1 cut(s) 42
AccI GTMKAC 2 cut(s) 750, 1251
AciI CCGC 5 cut(s) 40, 117, 556, 885, 1302
AclWI GGATC 2 cut(s) 790, 803
AcoI YGGCCR 2 cut(s) 3, 1285
AcsI RAATTY 4 cut(s) 136, 240, 498, 764
AfaI GTAC 3 cut(s) 173, 643, 911
AfiI CCNNNNNNNGG 2 cut(s) 457, 530
AflII CTTAAG 2 cut(s) 824, 1124
AflIII ACRYGT 2 cut(s) 1131, 1290
AgsI TTSAA 7 cut(s) 130, 196, 331, 395, 577, 1102, 1216
AjuI GAANNNNNNNTTGG 4 cut(s) 188, 220, 1121, 1153
AluBI AGCT 6 cut(s) 71, 269, 365, 565, 823, 986
AluI AGCT 6 cut(s) 71, 269, 365, 565, 823, 986
Alw26I GTCTC 4 cut(s) 3, 775, 1010, 1192
AlwI GGATC 2 cut(s) 790, 803
AoxI GGCC 4 cut(s) 3, 52, 533, 1285
ApeKI GCWGC 1 cut(s) 1073
ApoI RAATTY 4 cut(s) 136, 240, 498, 764
ArsI GACNNNNNNTTYG 2 cut(s) 856, 888
Asp700I GAANNNNTTC 2 cut(s) 966, 1133
Asp718I GGTACC 1 cut(s) 641
AspLEI GCGC 1 cut(s) 711
AspS9I GGNCC 1 cut(s) 533
AsuC2I CCSGG 1 cut(s) 1179
AsuHPI GGTGA 3 cut(s) 287, 410, 1097
BaeGI GKGCMC 1 cut(s) 463
BamHI GGATCC 1 cut(s) 795
BanI GGYRCC 2 cut(s) 508, 641
BanII GRGCYC 1 cut(s) 427
BbsI GAAGAC 2 cut(s) 42, 1204
BbvI GCAGC 1 cut(s) 1060
BccI CCATC 3 cut(s) 911, 1033, 1058
BceAI ACGGC 1 cut(s) 39
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 1 cut(s) 1179
BcoDI GTCTC 4 cut(s) 3, 775, 1010, 1192
BfaI CTAG 4 cut(s) 161, 441, 602, 809
BfrI CTTAAG 2 cut(s) 824, 1124
BisI GCNGC 2 cut(s) 1074, 1302
BlsI GCNGC 2 cut(s) 1075, 1303
BmcAI AGTACT 1 cut(s) 911
Bme1390I CCNGG 1 cut(s) 1179
BmgT120I GGNCC 1 cut(s) 533
BmiI GGNNCC 4 cut(s) 510, 534, 643, 797
BmrFI CCNGG 1 cut(s) 1179
BmsI GCATC 2 cut(s) 847, 889
BpiI GAAGAC 2 cut(s) 42, 1204
BpuMI CCSGG 1 cut(s) 1179
BsaI GGTCTC 1 cut(s) 1192
BsaJI CCNNGG 2 cut(s) 301, 1177
Bsc4I CCNNNNNNNGG 2 cut(s) 457, 530
Bse1I ACTGG 3 cut(s) 623, 809, 957
Bse3DI GCAATG 1 cut(s) 495
BseDI CCNNGG 2 cut(s) 301, 1177
BseGI GGATG 3 cut(s) 214, 838, 875
BseLI CCNNNNNNNGG 2 cut(s) 457, 530
BseMI GCAATG 1 cut(s) 495
BseNI ACTGG 3 cut(s) 623, 809, 957
BseSI GKGCMC 1 cut(s) 463
BseXI GCAGC 1 cut(s) 1060
BshFI GGCC 4 cut(s) 5, 54, 535, 1287
BshNI GGYRCC 2 cut(s) 508, 641
BsiSI CCGG 3 cut(s) 6, 771, 1179
BslFI GGGAC 2 cut(s) 434, 484
BslI CCNNNNNNNGG 2 cut(s) 457, 530
BsmAI GTCTC 4 cut(s) 3, 775, 1010, 1192
BsmFI GGGAC 2 cut(s) 434, 484
BsmI GAATGC 1 cut(s) 1280
BsnI GGCC 4 cut(s) 5, 54, 535, 1287
Bso31I GGTCTC 1 cut(s) 1192
Bsp1286I GDGCHC 2 cut(s) 427, 463
Bsp1407I TGTACA 1 cut(s) 171
Bsp143I GATC 6 cut(s) 22, 211, 255, 317, 790, 795
BspACI CCGC 5 cut(s) 40, 117, 556, 885, 1302
BspANI GGCC 4 cut(s) 5, 54, 535, 1287
BspLI GGNNCC 4 cut(s) 510, 534, 643, 797
BspPI GGATC 2 cut(s) 790, 803
BspQI GCTCTTC 1 cut(s) 552
BspT107I GGYRCC 2 cut(s) 508, 641
BspTI CTTAAG 2 cut(s) 824, 1124
BspTNI GGTCTC 1 cut(s) 1192
BsrBI CCGCTC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 495
BsrGI TGTACA 1 cut(s) 171
BsrI ACTGG 3 cut(s) 623, 809, 957
BssECI CCNNGG 2 cut(s) 301, 1177
BssMI GATC 6 cut(s) 22, 211, 255, 317, 790, 795
BssT1I CCWWGG 1 cut(s) 301
Bst4CI ACNGT 1 cut(s) 598
Bst6I CTCTTC 1 cut(s) 552
BstAFI CTTAAG 2 cut(s) 824, 1124
BstAUI TGTACA 1 cut(s) 171
BstDEI CTNAG 3 cut(s) 285, 341, 371
BstF5I GGATG 3 cut(s) 214, 838, 875
BstHHI GCGC 1 cut(s) 711
BstKTI GATC 6 cut(s) 25, 214, 258, 320, 793, 798
BstMAI GTCTC 4 cut(s) 3, 775, 1010, 1192
BstMBI GATC 6 cut(s) 22, 211, 255, 317, 790, 795
BstMWI GCNNNNNNNGC 1 cut(s) 1079
BstNSI RCATGY 2 cut(s) 1135, 1294
BstSCI CCNGG 1 cut(s) 1177
BstSLI GKGCMC 1 cut(s) 463
BstV1I GCAGC 1 cut(s) 1060
BstV2I GAAGAC 2 cut(s) 42, 1204
BstX2I RGATCY 1 cut(s) 795
BstYI RGATCY 1 cut(s) 795
BsuRI GGCC 4 cut(s) 5, 54, 535, 1287
BtsCI GGATG 3 cut(s) 214, 838, 875
BtsIMutI CAGTG 1 cut(s) 950
CfoI GCGC 1 cut(s) 711
Cfr13I GGNCC 1 cut(s) 533
Csp6I GTAC 3 cut(s) 172, 642, 910
CspCI CAANNNNNGTGG 2 cut(s) 287, 322
CviAII CATG 5 cut(s) 32, 45, 537, 1132, 1291
CviQI GTAC 3 cut(s) 172, 642, 910
DdeI CTNAG 3 cut(s) 285, 341, 371
DpnI GATC 6 cut(s) 24, 213, 257, 319, 792, 797
DpnII GATC 6 cut(s) 22, 211, 255, 317, 790, 795
EaeI YGGCCR 2 cut(s) 3, 1285
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
EciI GGCGGA 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 427
Eco31I GGTCTC 1 cut(s) 1192
EcoT14I CCWWGG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 5 cut(s) 35, 48, 540, 1135, 1294
FalI AAGNNNNNCTT 4 cut(s) 324, 356, 715, 747
FaqI GGGAC 2 cut(s) 434, 484
FatI CATG 5 cut(s) 31, 44, 536, 1131, 1290
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 2 cut(s) 750, 1251
Fnu4HI GCNGC 2 cut(s) 1074, 1302
FokI GGATG 3 cut(s) 221, 825, 882
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 2 cut(s) 1074, 1302
FspBI CTAG 4 cut(s) 161, 441, 602, 809
GlaI GCGC 1 cut(s) 710
GluI GCNGC 2 cut(s) 1074, 1302
HaeIII GGCC 4 cut(s) 5, 54, 535, 1287
HapII CCGG 3 cut(s) 6, 771, 1179
HhaI GCGC 1 cut(s) 711
Hin1II CATG 5 cut(s) 35, 48, 540, 1135, 1294
Hin6I GCGC 1 cut(s) 709
HinP1I GCGC 1 cut(s) 709
HinfI GANTC 8 cut(s) 107, 388, 447, 527, 967, 977, 997, 1090
HpaII CCGG 3 cut(s) 6, 771, 1179
HphI GGTGA 3 cut(s) 287, 410, 1097
Hpy166II GTNNAC 3 cut(s) 65, 751, 1252
Hpy188I TCNGA 3 cut(s) 795, 1002, 1197
Hpy188III TCNNGA 4 cut(s) 161, 321, 392, 524
Hpy8I GTNNAC 3 cut(s) 65, 751, 1252
Hpy99I CGWCG 1 cut(s) 459
HpyAV CCTTC 8 cut(s) 44, 99, 318, 343, 389, 530, 1159, 1237
HpyCH4III ACNGT 1 cut(s) 598
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 3 cut(s) 758, 1076, 1280
HpyF10VI GCNNNNNNNGC 1 cut(s) 1079
HpyF3I CTNAG 3 cut(s) 285, 341, 371
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 5 cut(s) 35, 48, 540, 1135, 1294
HspAI GCGC 1 cut(s) 709
KpnI GGTACC 1 cut(s) 645
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 6 cut(s) 22, 211, 255, 317, 790, 795
LguI GCTCTTC 1 cut(s) 552
LmnI GCTCC 1 cut(s) 76
Lsp1109I GCAGC 1 cut(s) 1060
LweI GCATC 2 cut(s) 847, 889
MaeI CTAG 4 cut(s) 161, 441, 602, 809
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 3 cut(s) 569, 677, 727
MalI GATC 6 cut(s) 24, 213, 257, 319, 792, 797
MbiI CCGCTC 1 cut(s) 42
MboI GATC 6 cut(s) 22, 211, 255, 317, 790, 795
MboII GAAGA 7 cut(s) 28, 47, 176, 327, 539, 589, 1204
MfeI CAATTG 1 cut(s) 1077
MflI RGATCY 1 cut(s) 795
MhlI GDGCHC 2 cut(s) 427, 463
MluCI AATT 6 cut(s) 136, 240, 464, 498, 764, 1077
MlyI GAGTC 3 cut(s) 101, 456, 971
MnlI CCTC 2 cut(s) 522, 1213
MroXI GAANNNNTTC 2 cut(s) 966, 1133
MseI TTAA 7 cut(s) 219, 383, 416, 656, 825, 927, 1125
MslI CAYNNNNRTG 1 cut(s) 30
MspCI CTTAAG 2 cut(s) 824, 1124
MspI CCGG 3 cut(s) 6, 771, 1179
MspR9I CCNGG 1 cut(s) 1179
MunI CAATTG 1 cut(s) 1077
Mva1269I GAATGC 1 cut(s) 1280
MwoI GCNNNNNNNGC 1 cut(s) 1079
NciI CCSGG 1 cut(s) 1179
NdeII GATC 6 cut(s) 22, 211, 255, 317, 790, 795
NlaIII CATG 5 cut(s) 35, 48, 540, 1135, 1294
NlaIV GGNNCC 4 cut(s) 510, 534, 643, 797
NmuCI GTSAC 1 cut(s) 677
NspI RCATGY 2 cut(s) 1135, 1294
PciI ACATGT 2 cut(s) 1131, 1290
PciSI GCTCTTC 1 cut(s) 552
PctI GAATGC 1 cut(s) 1280
PdmI GAANNNNTTC 2 cut(s) 966, 1133
PfeI GAWTC 5 cut(s) 388, 527, 967, 997, 1090
PkrI GCNGC 2 cut(s) 1075, 1303
PleI GAGTC 3 cut(s) 101, 455, 971
PpsI GAGTC 3 cut(s) 101, 455, 971
PscI ACATGT 2 cut(s) 1131, 1290
PspN4I GGNNCC 4 cut(s) 510, 534, 643, 797
PspPI GGNCC 1 cut(s) 533
PsuI RGATCY 1 cut(s) 795
RsaI GTAC 3 cut(s) 173, 643, 911
RsaNI GTAC 3 cut(s) 172, 642, 910
RseI CAYNNNNRTG 1 cut(s) 30
SapI GCTCTTC 1 cut(s) 552
SaqAI TTAA 7 cut(s) 219, 383, 416, 656, 825, 927, 1125
SatI GCNGC 2 cut(s) 1074, 1302
Sau3AI GATC 6 cut(s) 22, 211, 255, 317, 790, 795
Sau96I GGNCC 1 cut(s) 533
ScaI AGTACT 1 cut(s) 911
SchI GAGTC 3 cut(s) 101, 456, 971
ScrFI CCNGG 1 cut(s) 1179
SduI GDGCHC 2 cut(s) 427, 463
SfaNI GCATC 2 cut(s) 847, 889
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 2 cut(s) 824, 1124
SmoI CTYRAG 2 cut(s) 824, 1124
Sse9I AATT 6 cut(s) 136, 240, 464, 498, 764, 1077
SsiI CCGC 5 cut(s) 40, 117, 556, 885, 1302
SspMI CTAG 4 cut(s) 161, 441, 602, 809
StyD4I CCNGG 1 cut(s) 1177
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 598
TaiI ACGT 1 cut(s) 422
TaqI TCGA 5 cut(s) 141, 187, 635, 906, 1062
TasI AATT 6 cut(s) 136, 240, 464, 498, 764, 1077
TatI WGTACW 2 cut(s) 171, 909
TauI GCSGC 1 cut(s) 1304
TfiI GAWTC 5 cut(s) 388, 527, 967, 997, 1090
Tru1I TTAA 7 cut(s) 219, 383, 416, 656, 825, 927, 1125
Tru9I TTAA 7 cut(s) 219, 383, 416, 656, 825, 927, 1125
TscAI CASTG 1 cut(s) 957
TseFI GTSAC 1 cut(s) 677
TseI GCWGC 1 cut(s) 1073
Tsp45I GTSAC 1 cut(s) 677
TspDTI ATGAA 6 cut(s) 48, 417, 846, 1109, 1281, 1285
TspGWI ACGGA 1 cut(s) 1085
TspRI CASTG 1 cut(s) 957
Vha464I CTTAAG 2 cut(s) 824, 1124
XapI RAATTY 4 cut(s) 136, 240, 498, 764
XbaI TCTAGA 1 cut(s) 160
XceI RCATGY 2 cut(s) 1135, 1294
XmiI GTMKAC 2 cut(s) 750, 1251
XmnI GAANNNNTTC 2 cut(s) 966, 1133
XspI CTAG 4 cut(s) 161, 441, 602, 809
ZrmI AGTACT 1 cut(s) 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.