Rmu_sc0000394.1_g000051

Golgi to plasma membrane transport

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000394.1
Physical Location & Seq
Reverse (-)
180165 .. 181741
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000394.1_g000051.1.cds

Sequence Viewer

Length: 579 bp
atgggcttactaagcacaaaaaaggctgctcaatctaccccatttcttgttgttctacctatattaacattatcattccacaaatattgcaagtatcgttttgaacctgcattcagaaaatatccacttgaggaagccatggaaaaagacgaattggacaaaactacggaacctgacataaatttaaaatcatacttggctgatgcgtacttgcaccctattttccgctcatttgaggaacaacatgagtcggttgaagtcagagtagacaaacatcagactcatattgctgctcccattacaagtgaactcagttcccctactccacctcataatgtcagttccccatctccaccccataatgtccttcacatcccatcccaatccgcctattaccaatcctctccaccccaatactcgtacaattcgaactcgccgcctaattatgtgtatcattcaacctctccgccacattattcctaccataatgaagaaccacaaccgcattacacttaccacaatgaagaccccccaccccattatggtagtcattatggctaccataacgaagaactgtga
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

192

Amino Acids

22.17

Weight (kDa)

5.93

Isoelectric Point (pI)

87.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 115
AccBSI CCGCTC 1 cut(s) 228
AccI GTMKAC 1 cut(s) 267
AciI CCGC 5 cut(s) 226, 387, 437, 467, 503
AcsI RAATTY 1 cut(s) 181
AfaI GTAC 2 cut(s) 209, 422
AfiI CCNNNNNNNGG 1 cut(s) 542
AgsI TTSAA 3 cut(s) 104, 257, 459
ApeKI GCWGC 2 cut(s) 26, 290
ApoI RAATTY 1 cut(s) 181
AsuII TTCGAA 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 531
BbvI GCAGC 2 cut(s) 13, 277
BccI CCATC 2 cut(s) 355, 385
BfuAI ACCTGC 1 cut(s) 115
BisI GCNGC 3 cut(s) 27, 291, 437
BlsI GCNGC 3 cut(s) 28, 292, 438
BmiI GGNNCC 1 cut(s) 171
BmsI GCATC 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 531
Bpu14I TTCGAA 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 542
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 2 cut(s) 372, 377
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMII CTCAG 1 cut(s) 325
BseXI GCAGC 2 cut(s) 13, 277
BslI CCNNNNNNNGG 1 cut(s) 542
BsmI GAATGC 1 cut(s) 110
Bsp119I TTCGAA 1 cut(s) 428
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 5 cut(s) 226, 387, 437, 467, 503
BspCNI CTCAG 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 171
BspMI ACCTGC 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 428
BsrBI CCGCTC 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 576
BstBI TTCGAA 1 cut(s) 428
BstDEI CTNAG 2 cut(s) 11, 311
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 2 cut(s) 372, 377
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 13, 277
BstV2I GAAGAC 1 cut(s) 531
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 372, 377
BveI ACCTGC 1 cut(s) 115
Csp6I GTAC 2 cut(s) 208, 421
CspCI CAANNNNNGTGG 2 cut(s) 68, 103
CviAII CATG 2 cut(s) 139, 245
CviJI RGCY 5 cut(s) 6, 26, 137, 200, 558
CviKI_1 RGCY 5 cut(s) 6, 26, 137, 200, 558
CviQI GTAC 2 cut(s) 208, 421
DdeI CTNAG 2 cut(s) 11, 311
DraI TTTAAA 1 cut(s) 186
EciI GGCGGA 2 cut(s) 376, 456
Eco130I CCWWGG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 142, 248
FatI CATG 2 cut(s) 138, 244
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 27, 291, 437
FokI GGATG 2 cut(s) 359, 364
Fsp4HI GCNGC 3 cut(s) 27, 291, 437
GluI GCNGC 3 cut(s) 27, 291, 437
Hin1II CATG 2 cut(s) 142, 248
HinfI GANTC 2 cut(s) 248, 280
Hpy166II GTNNAC 2 cut(s) 268, 308
Hpy188I TCNGA 3 cut(s) 116, 263, 279
Hpy8I GTNNAC 2 cut(s) 268, 308
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 1 cut(s) 576
HpyCH4V TGCA 3 cut(s) 90, 110, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 2 cut(s) 11, 311
Hsp92II CATG 2 cut(s) 142, 248
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 2 cut(s) 120, 186
Lsp1109I GCAGC 2 cut(s) 13, 277
LweI GCATC 1 cut(s) 193
MbiI CCGCTC 1 cut(s) 228
MboII GAAGA 2 cut(s) 503, 536
MluCI AATT 4 cut(s) 152, 181, 424, 442
MlyI GAGTC 2 cut(s) 257, 274
MnlI CCTC 5 cut(s) 124, 229, 339, 412, 472
MseI TTAA 2 cut(s) 65, 185
Mva1269I GAATGC 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 12
NcoI CCATGG 1 cut(s) 138
NlaIII CATG 2 cut(s) 142, 248
NlaIV GGNNCC 1 cut(s) 171
NspV TTCGAA 1 cut(s) 428
PcsI WCGNNNNNNNCGW 1 cut(s) 425
PctI GAATGC 1 cut(s) 110
PkrI GCNGC 3 cut(s) 28, 292, 438
PleI GAGTC 2 cut(s) 256, 274
PpsI GAGTC 2 cut(s) 256, 274
PspN4I GGNNCC 1 cut(s) 171
RsaI GTAC 2 cut(s) 209, 422
RsaNI GTAC 2 cut(s) 208, 421
SaqAI TTAA 2 cut(s) 65, 185
SatI GCNGC 3 cut(s) 27, 291, 437
SchI GAGTC 2 cut(s) 257, 274
SetI ASST 5 cut(s) 61, 109, 175, 331, 464
SfaNI GCATC 1 cut(s) 193
SfuI TTCGAA 1 cut(s) 428
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 4 cut(s) 152, 181, 424, 442
SsiI CCGC 5 cut(s) 226, 387, 437, 467, 503
SspI AATATT 1 cut(s) 86
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 576
TaqI TCGA 1 cut(s) 428
TasI AATT 4 cut(s) 152, 181, 424, 442
TauI GCSGC 1 cut(s) 439
Tru1I TTAA 2 cut(s) 65, 185
Tru9I TTAA 2 cut(s) 65, 185
TseI GCWGC 2 cut(s) 26, 290
TspDTI ATGAA 2 cut(s) 504, 537
TspGWI ACGGA 1 cut(s) 182
XapI RAATTY 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.