Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001682

Physical Location & Seq

Genomic Coordinates Reverse (-)

47981978 .. 47982881

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG351500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTCGATGGGTGGGCTGCAATTGCTGGTGAGATTCTCCGTTTGAAGCCATTGGTTATATTTCATCTTAAGAACATGTTCTTGGTAAAAACTGAGAGAGATAGGGAGAAGGCAACAAACCCCGGTAGTGTGGATTTTCCAGAGACTCTCCCAAGTCTTCAACTATACTTCCTTCTGGGGATTGTGTATGCTGTGGTTACTCTGATCCTACTGCCTTTTATACTAGTCTTCTTTGCCTTTGCATACTTAGTCTACCGTCATCAGATAATCAATGTCTACAATCAACAATATGAAAGTGCTGCTGCATTCTGGCCACATGTTCATAGCCGCATCATAGCAAGCTTGTTGATATCTCAACTACTGTTGATGGGCTTACTAAGCACAAAAAAGGCTGCTCAATCTACCCCATTTCTTGTTGTTCTACCTATATTAACATTATCATTCCACAAATATTGCAAGTATCGTTTTGAACCTGCATTCAGAAAGTATCCACTTGAGGTAAACTTTGAAGTTATTTTTGGATCTATTGGTTTTAATGCTTTTTTATTTTTTTATATTATTTATTTTATTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

191

Amino Acids

22.1

Weight (kDa)

9.3

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RSN1_7TM	PF02714	1 - 126	3.6e-37	Calcium-dependent channel, 7TM region, putative phosphate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32090
fragaria_vesca	FvH4_3g01530 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560
malus_domestica	MD06G1023400.v1.1
prunus_persica	Prupe.3G145100_v2.0.a1 Prupe.5G024400_v2.0.a1 Prupe.5G024400_v2.0.a1
pyrus_communis	pycom03g21460 pycom06g01880
rosa_chinensis	RchiOBHm_Chr2g0130361 RchiOBHm_Chr7g0212871
rosa_laevigata	RLG00000002863 RLG00000036352
rosa_multiflora	Rmu_sc0000394.1_g000051 Rmu_sc0000394.1_g000052 Rmu_sc0017945.1_g000005
rosa_roxburghii	Rroxscaffold_2G00133450 Rroxscaffold_2G00135350 Rroxscaffold_3G00246490 Rroxscaffold_4G00293800 Rroxscaffold_4G00312360 Rroxscaffold_4G00322900 Rroxscaffold_5G00343810 Rroxscaffold_5G00343840 Rroxscaffold_5G00352480 Rroxscaffold_7G00204210
rosa_rugosa	Rorug07G0137200 Rorug07G0137300
rosa_samantha	Rh2BG351500 Rh4AG085800 Rh4CG093500 Rh4DG116200 Rh5AG424600 Rh7AG268800 Rh7BG264400 Rh7CG287800 Rh7DG276900 Rh7DG324500
rosa_wichuraiana	Rw2G028960 Rw4G010010 Rw4G015390 Rw5G037750 Rw7G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	574
Acc36I	ACCTGC	1 cut(s)	481
AccI	GTMKAC	2 cut(s)	252, 276
AciI	CCGC	1 cut(s)	328
AclWI	GGATC	2 cut(s)	199, 529
AcoI	YGGCCR	1 cut(s)	311
AflII	CTTAAG	1 cut(s)	68
AflIII	ACRYGT	2 cut(s)	75, 316
AgsI	TTSAA	4 cut(s)	46, 161, 470, 509
AhlI	ACTAGT	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	4 cut(s)	65, 97, 501, 533
AluBI	AGCT	1 cut(s)	342
AluI	AGCT	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	199, 529
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	4 cut(s)	17, 299, 302, 392
Asp700I	GAANNNNTTC	1 cut(s)	77
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	313
BbsI	GAAGAC	2 cut(s)	149, 220
BbvI	GCAGC	4 cut(s)	4, 286, 289, 379
BccI	CCATC	2 cut(s)	2, 361
BciVI	GTATCC	1 cut(s)	498
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	137
BcuI	ACTAGT	1 cut(s)	223
BfaI	CTAG	1 cut(s)	224
BfrI	CTTAAG	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	481
BfuI	GTATCC	1 cut(s)	498
BisI	GCNGC	5 cut(s)	18, 300, 303, 328, 393
BlsI	GCNGC	5 cut(s)	19, 301, 304, 329, 394
Bme1390I	CCNGG	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	339
BpiI	GAAGAC	2 cut(s)	149, 220
BpuEI	CTTGAG	1 cut(s)	515
BpuMI	CCSGG	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	84
BseXI	GCAGC	4 cut(s)	4, 286, 289, 379
BshFI	GGCC	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	137
BsmI	GAATGC	2 cut(s)	305, 476
BsnI	GGCC	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	204, 521
BspACI	CCGC	1 cut(s)	328
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	481
BspPI	GGATC	2 cut(s)	199, 529
BspTI	CTTAAG	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	204, 521
Bst4CI	ACNGT	2 cut(s)	257, 363
BstAFI	CTTAAG	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	3 cut(s)	93, 247, 377
BstKTI	GATC	2 cut(s)	207, 524
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	2 cut(s)	204, 521
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 378
BstNSI	RCATGY	2 cut(s)	79, 320
BstSCI	CCNGG	1 cut(s)	121
BstV1I	GCAGC	4 cut(s)	4, 286, 289, 379
BstV2I	GAAGAC	2 cut(s)	149, 220
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
BsuI	GTATCC	1 cut(s)	498
BsuRI	GGCC	1 cut(s)	313
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	340
CspCI	CAANNNNNGTGG	2 cut(s)	434, 469
CviAII	CATG	2 cut(s)	76, 317
CviJI	RGCY	7 cut(s)	17, 49, 313, 327, 342, 372, 392
CviKI_1	RGCY	7 cut(s)	17, 49, 313, 327, 342, 372, 392
DdeI	CTNAG	3 cut(s)	93, 247, 377
DpnI	GATC	2 cut(s)	206, 523
DpnII	GATC	2 cut(s)	204, 521
EaeI	YGGCCR	1 cut(s)	311
Eco32I	GATATC	1 cut(s)	351
EcoRV	GATATC	1 cut(s)	351
FaeI	CATG	2 cut(s)	79, 320
FatI	CATG	2 cut(s)	75, 316
FblI	GTMKAC	2 cut(s)	252, 276
Fnu4HI	GCNGC	5 cut(s)	18, 300, 303, 328, 393
Fsp4HI	GCNGC	5 cut(s)	18, 300, 303, 328, 393
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	5 cut(s)	18, 300, 303, 328, 393
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	2 cut(s)	79, 320
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	2 cut(s)	34, 145
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	3 cut(s)	253, 277, 502
Hpy188I	TCNGA	3 cut(s)	204, 264, 482
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	3 cut(s)	253, 277, 502
HpyAV	CCTTC	2 cut(s)	103, 182
HpyCH4III	ACNGT	2 cut(s)	257, 363
HpyCH4V	TGCA	5 cut(s)	20, 242, 305, 456, 476
HpyF3I	CTNAG	3 cut(s)	93, 247, 377
Hsp92II	CATG	2 cut(s)	79, 320
Kzo9I	GATC	2 cut(s)	204, 521
LpnPI	CCDG	6 cut(s)	12, 136, 153, 161, 295, 486
Lsp1109I	GCAGC	4 cut(s)	4, 286, 289, 379
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	206, 523
MboI	GATC	2 cut(s)	204, 521
MboII	GAAGA	2 cut(s)	149, 220
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	1 cut(s)	521
MlsI	TGGCCA	1 cut(s)	313
MluCI	AATT	1 cut(s)	21
MluNI	TGGCCA	1 cut(s)	313
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	1 cut(s)	490
Mox20I	TGGCCA	1 cut(s)	313
MroXI	GAANNNNTTC	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	313
MseI	TTAA	3 cut(s)	69, 431, 534
Msp20I	TGGCCA	1 cut(s)	313
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	123
MunI	CAATTG	1 cut(s)	21
Mva1269I	GAATGC	2 cut(s)	305, 476
MwoI	GCNNNNNNNGC	2 cut(s)	23, 378
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	2 cut(s)	204, 521
NlaIII	CATG	2 cut(s)	79, 320
NspI	RCATGY	2 cut(s)	79, 320
PciI	ACATGT	2 cut(s)	75, 316
PctI	GAATGC	2 cut(s)	305, 476
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	5 cut(s)	19, 301, 304, 329, 394
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PscI	ACATGT	2 cut(s)	75, 316
PsiI	TTATAA	1 cut(s)	574
PsuI	RGATCY	1 cut(s)	521
SaqAI	TTAA	3 cut(s)	69, 431, 534
SatI	GCNGC	5 cut(s)	18, 300, 303, 328, 393
Sau3AI	GATC	2 cut(s)	204, 521
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	4 cut(s)	344, 427, 475, 501
SfaNI	GCATC	1 cut(s)	339
SmlI	CTYRAG	2 cut(s)	68, 494
SmoI	CTYRAG	2 cut(s)	68, 494
SpeI	ACTAGT	1 cut(s)	223
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	1 cut(s)	328
SspI	AATATT	1 cut(s)	452
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	257, 363
TaqI	TCGA	1 cut(s)	6
TasI	AATT	1 cut(s)	21
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	3 cut(s)	69, 431, 534
Tru9I	TTAA	3 cut(s)	69, 431, 534
TseI	GCWGC	4 cut(s)	17, 299, 302, 392
TspDTI	ATGAA	3 cut(s)	53, 306, 311
TspGWI	ACGGA	1 cut(s)	29
Vha464I	CTTAAG	1 cut(s)	68
XceI	RCATGY	2 cut(s)	79, 320
XmiI	GTMKAC	2 cut(s)	252, 276
XmnI	GAANNNNTTC	1 cut(s)	77
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.