Rroxscaffold_7G00204210

Golgi to plasma membrane transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001682
Physical Location & Seq
Forward (+)
53354176 .. 53368503
14328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00204210.1

Sequence Viewer

Length: 756 bp
ATGAAAGCTCTAATAGAGAAGCCCAGAAAATACAGAGGAAATGAGAGAGAAATTCAAGAAGTGCAGCTAGCTTCTCCGATGTCGAGTTTCATGCCAATGCCAATCGATCGAACACAAATCTTCTGCTTGAAGATTTTTGTTCCAATGACAGTCCTAGCACTTCTTATTCTTATTCCAGTCAATGTATCGAGTGGTACCTTATTTTTCTTAAAGAAAGAGTTGGTTTTGAGTGACATTGATAGGCTCTCTATATCAAATGTGCGCCCCAAGTCAATAAGGGCAGTCTACAATGCAAACAAATTTGCCGTACTTGTGAGACAGCGAGATCGGATCCAAAACTGGCTAGACTATTACCAGCTTAAGTATGAAAGGCATCCAAACAAAAAACCAACCACAAAGACAGGATGTTTGGGTCTTTGCGGTAAAAGGGTTGATGCCATCGAGTACTACAAGCAACAGATTAAGTCATTTGATAAAAGAATGGCACCGGAACAAGAAAAGATTCTCAAAGACTCCAAAGCTCTTTTGCCAGTTGCTTTTGTGATTCCGAGAAACATTGGAGAGACTATACCATCAAAGGCTACTTTCTTTATTACATATATAATGGTCGATGGGTGGGCTGCAATTGCTGGTGAGATTCTCCGTTTGAAGCCATTGGCTTATTTTGGCTCAAAGGGCTATCTAAGGGATAATGTAATCAGGGATGGAGGCTATATGGCCATGGTGGAATGGAAACTCTCGGAATTAACTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

251

Amino Acids

28.93

Weight (kDa)

9.81

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RSN1_TM PF13967 40 - 94 2.9e-07 Late exocytosis, associated with Golgi transport
PHM7_cyt PF14703 89 - 182 7.9e-22 Cytosolic domain of 10TM putative phosphate transporter
RSN1_7TM PF02714 182 - 229 4.7e-08 Calcium-dependent channel, 7TM region, putative phosphate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 194
AccB1I GGYRCC 2 cut(s) 194, 484
AccI GTMKAC 1 cut(s) 285
AciI CCGC 1 cut(s) 420
AclWI GGATC 2 cut(s) 325, 338
AcoI YGGCCR 1 cut(s) 717
AcsI RAATTY 2 cut(s) 51, 299
AfaI GTAC 3 cut(s) 196, 309, 446
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 3 cut(s) 56, 130, 649
AluBI AGCT 5 cut(s) 8, 67, 71, 358, 521
AluI AGCT 5 cut(s) 8, 67, 71, 358, 521
Alw26I GTCTC 2 cut(s) 310, 557
AlwI GGATC 2 cut(s) 325, 338
AoxI GGCC 1 cut(s) 717
ApeKI GCWGC 2 cut(s) 64, 620
ApoI RAATTY 2 cut(s) 51, 299
ArsI GACNNNNNNTTYG 2 cut(s) 391, 423
Asp700I GAANNNNTTC 1 cut(s) 501
Asp718I GGTACC 1 cut(s) 194
AspLEI GCGC 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 644
AsuNHI GCTAGC 1 cut(s) 67
BalI TGGCCA 1 cut(s) 719
BamHI GGATCC 1 cut(s) 330
BanI GGYRCC 2 cut(s) 194, 484
BbvI GCAGC 2 cut(s) 76, 607
BccI CCATC 4 cut(s) 446, 580, 605, 698
BceAI ACGGC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BcoDI GTCTC 2 cut(s) 310, 557
BfaI CTAG 3 cut(s) 68, 155, 344
BfrI CTTAAG 1 cut(s) 359
BisI GCNGC 2 cut(s) 65, 621
BlsI GCNGC 2 cut(s) 66, 622
BmcAI AGTACT 1 cut(s) 446
BmiI GGNNCC 3 cut(s) 196, 332, 486
BmsI GCATC 2 cut(s) 382, 424
BmtI GCTAGC 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 720
BsaWI WCCGGW 1 cut(s) 487
Bse1I ACTGG 3 cut(s) 176, 344, 530
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 720
BseGI GGATG 3 cut(s) 373, 410, 709
BseNI ACTGG 3 cut(s) 176, 344, 530
BseXI GCAGC 2 cut(s) 76, 607
BsgI GTGCAG 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 1 cut(s) 719
BshNI GGYRCC 2 cut(s) 194, 484
BshVI ATCGAT 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 109
BsiSI CCGG 1 cut(s) 488
BsmAI GTCTC 2 cut(s) 310, 557
BsnI GGCC 1 cut(s) 719
Bsp143I GATC 3 cut(s) 106, 325, 330
Bsp19I CCATGG 1 cut(s) 720
BspACI CCGC 1 cut(s) 420
BspANI GGCC 1 cut(s) 719
BspDI ATCGAT 1 cut(s) 105
BspLI GGNNCC 3 cut(s) 196, 332, 486
BspOI GCTAGC 1 cut(s) 71
BspPI GGATC 2 cut(s) 325, 338
BspT107I GGYRCC 2 cut(s) 194, 484
BspTI CTTAAG 1 cut(s) 359
BsrI ACTGG 3 cut(s) 176, 344, 530
BssECI CCNNGG 1 cut(s) 720
BssMI GATC 3 cut(s) 106, 325, 330
BssT1I CCWWGG 1 cut(s) 720
Bst4CI ACNGT 1 cut(s) 151
BstAFI CTTAAG 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 683
BstDSI CCRYGG 1 cut(s) 720
BstF5I GGATG 3 cut(s) 373, 410, 709
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 3 cut(s) 109, 328, 333
BstMAI GTCTC 2 cut(s) 310, 557
BstMBI GATC 3 cut(s) 106, 325, 330
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 2 cut(s) 626, 675
BstV1I GCAGC 2 cut(s) 76, 607
BstX2I RGATCY 1 cut(s) 330
BstYI RGATCY 1 cut(s) 330
Bsu15I ATCGAT 1 cut(s) 105
BsuRI GGCC 1 cut(s) 719
BsuTUI ATCGAT 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 720
BtsCI GGATG 3 cut(s) 373, 410, 709
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 1 cut(s) 264
ClaI ATCGAT 1 cut(s) 105
Csp6I GTAC 3 cut(s) 195, 308, 445
CviAII CATG 2 cut(s) 91, 721
CviQI GTAC 3 cut(s) 195, 308, 445
DdeI CTNAG 1 cut(s) 683
DpnI GATC 3 cut(s) 108, 327, 332
DpnII GATC 3 cut(s) 106, 325, 330
EaeI YGGCCR 1 cut(s) 717
Eco130I CCWWGG 1 cut(s) 720
EcoT14I CCWWGG 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 720
FaeI CATG 2 cut(s) 94, 724
FatI CATG 2 cut(s) 90, 720
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 65, 621
FokI GGATG 3 cut(s) 360, 417, 716
Fsp4HI GCNGC 2 cut(s) 65, 621
FspBI CTAG 3 cut(s) 68, 155, 344
GlaI GCGC 1 cut(s) 263
GluI GCNGC 2 cut(s) 65, 621
HaeIII GGCC 1 cut(s) 719
HapII CCGG 1 cut(s) 488
HhaI GCGC 1 cut(s) 264
Hin1II CATG 2 cut(s) 94, 724
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HinfI GANTC 4 cut(s) 502, 512, 544, 637
HpaII CCGG 1 cut(s) 488
HphI GGTGA 1 cut(s) 644
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 4 cut(s) 78, 330, 549, 742
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 286
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 3 cut(s) 64, 293, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 626, 675
HpyF3I CTNAG 1 cut(s) 683
Hsp92II CATG 2 cut(s) 94, 724
HspAI GCGC 1 cut(s) 262
KpnI GGTACC 1 cut(s) 198
Kzo9I GATC 3 cut(s) 106, 325, 330
LpnPI CCDG 9 cut(s) 37, 189, 325, 368, 387, 501, 543, 615, 685
Lsp1109I GCAGC 2 cut(s) 76, 607
LweI GCATC 2 cut(s) 382, 424
MaeI CTAG 3 cut(s) 68, 155, 344
MaeIII GTNAC 1 cut(s) 230
MalI GATC 3 cut(s) 108, 327, 332
MboI GATC 3 cut(s) 106, 325, 330
MboII GAAGA 2 cut(s) 112, 142
MfeI CAATTG 1 cut(s) 624
MflI RGATCY 1 cut(s) 330
MlsI TGGCCA 1 cut(s) 719
MluCI AATT 4 cut(s) 51, 299, 624, 743
MluNI TGGCCA 1 cut(s) 719
MlyI GAGTC 1 cut(s) 506
MnlI CCTC 2 cut(s) 29, 701
Mox20I TGGCCA 1 cut(s) 719
MroXI GAANNNNTTC 1 cut(s) 501
MscI TGGCCA 1 cut(s) 719
MseI TTAA 4 cut(s) 209, 360, 462, 746
MslI CAYNNNNRTG 1 cut(s) 95
Msp20I TGGCCA 1 cut(s) 719
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 1 cut(s) 488
MunI CAATTG 1 cut(s) 624
MwoI GCNNNNNNNGC 2 cut(s) 626, 675
NcoI CCATGG 1 cut(s) 720
NdeII GATC 3 cut(s) 106, 325, 330
NheI GCTAGC 1 cut(s) 67
NlaIII CATG 2 cut(s) 94, 724
NlaIV GGNNCC 3 cut(s) 196, 332, 486
NmuCI GTSAC 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 3 cut(s) 502, 544, 637
PkrI GCNGC 2 cut(s) 66, 622
Ple19I CGATCG 1 cut(s) 109
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
PspN4I GGNNCC 3 cut(s) 196, 332, 486
PsuI RGATCY 1 cut(s) 330
PvuI CGATCG 1 cut(s) 109
RsaI GTAC 3 cut(s) 196, 309, 446
RsaNI GTAC 3 cut(s) 195, 308, 445
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 4 cut(s) 209, 360, 462, 746
SatI GCNGC 2 cut(s) 65, 621
Sau3AI GATC 3 cut(s) 106, 325, 330
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 1 cut(s) 506
SetI ASST 6 cut(s) 10, 69, 73, 200, 360, 523
SfaNI GCATC 2 cut(s) 382, 424
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 4 cut(s) 51, 299, 624, 743
SsiI CCGC 1 cut(s) 420
SspMI CTAG 3 cut(s) 68, 155, 344
StyI CCWWGG 1 cut(s) 720
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 6 cut(s) 83, 105, 109, 188, 441, 609
TasI AATT 4 cut(s) 51, 299, 624, 743
TatI WGTACW 1 cut(s) 444
TfiI GAWTC 3 cut(s) 502, 544, 637
Tru1I TTAA 4 cut(s) 209, 360, 462, 746
Tru9I TTAA 4 cut(s) 209, 360, 462, 746
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 2 cut(s) 64, 620
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 17, 79, 381
TspGWI ACGGA 1 cut(s) 632
Vha464I CTTAAG 1 cut(s) 359
XapI RAATTY 2 cut(s) 51, 299
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 3 cut(s) 68, 155, 344
ZrmI AGTACT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.