Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001682

Physical Location & Seq

Genomic Coordinates Forward (+)

53501362 .. 53506576

Gene Structure 5215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGACAGTCCTAGCACTTCTTATTCTTATTCCAGTCAATGTATCGAGTGGTACCTTATTTTTCTTAAAGAAAGAGTTGGTTTTGAGTGACATTGATAGGCTCTCTATATCAAATGTGCGCCCCAAGTCAATAAGCATCAATGAGGTTGAAATTCTTAGCTTCACAGCGCTGGCGTACAGAACAGTTCACGTCTACAATGCAAACAAATTTGCCGGACTTGTGAGACAGCGAGATCGGATCCAAAACTGGCTAGACTATTACCAGCTTAAGTATGAAAGGCATCCAAACAAAAAACCAACCACAAAGACAGGATGTTTGGGTCTTTGCGGTAAAAGGGTTGATGCCATCGAGTACTACAAGCAACAGATTAAGTCATTTGATAAAAGAATGGCACCGGAACAAGAAAAGATTCTCAAAGACTCCAAAGCTCTTTTGCCAGTTGCTTTTGTGTCATTTAGTTCACTTGATGAAAAGGAAAAGGGTGGTGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

164

Amino Acids

18.74

Weight (kDa)

9.37

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHM7_cyt	PF14703	62 - 154	1.4e-23	Cytosolic domain of 10TM putative phosphate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32090
fragaria_vesca	FvH4_3g01530 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560
malus_domestica	MD06G1023400.v1.1
prunus_persica	Prupe.3G145100_v2.0.a1 Prupe.5G024400_v2.0.a1 Prupe.5G024400_v2.0.a1
pyrus_communis	pycom03g21460 pycom06g01880
rosa_chinensis	RchiOBHm_Chr2g0130361 RchiOBHm_Chr7g0212871
rosa_laevigata	RLG00000002863 RLG00000036352
rosa_multiflora	Rmu_sc0000394.1_g000051 Rmu_sc0000394.1_g000052 Rmu_sc0017945.1_g000005
rosa_roxburghii	Rroxscaffold_2G00133450 Rroxscaffold_2G00135350 Rroxscaffold_3G00246490 Rroxscaffold_4G00293800 Rroxscaffold_4G00312360 Rroxscaffold_4G00322900 Rroxscaffold_5G00343810 Rroxscaffold_5G00343840 Rroxscaffold_5G00352480 Rroxscaffold_7G00204210
rosa_rugosa	Rorug07G0137200 Rorug07G0137300
rosa_samantha	Rh2BG351500 Rh4AG085800 Rh4CG093500 Rh4DG116200 Rh5AG424600 Rh7AG268800 Rh7BG264400 Rh7CG287800 Rh7DG276900 Rh7DG324500
rosa_wichuraiana	Rw2G028960 Rw4G010010 Rw4G015390 Rw5G037750 Rw7G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	50, 391
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	2 cut(s)	232, 245
AcsI	RAATTY	2 cut(s)	150, 206
AfaI	GTAC	3 cut(s)	52, 176, 353
AfeI	AGCGCT	1 cut(s)	168
AflII	CTTAAG	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	149
AjiI	CACGTC	1 cut(s)	190
AluBI	AGCT	3 cut(s)	159, 265, 428
AluI	AGCT	3 cut(s)	159, 265, 428
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	2 cut(s)	232, 245
Aor51HI	AGCGCT	1 cut(s)	168
ApoI	RAATTY	2 cut(s)	150, 206
ArsI	GACNNNNNNTTYG	2 cut(s)	298, 330
Asp700I	GAANNNNTTC	1 cut(s)	408
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	120, 169
BamHI	GGATCC	1 cut(s)	237
BanI	GGYRCC	2 cut(s)	50, 391
BccI	CCATC	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	2 cut(s)	11, 251
BfoI	RGCGCY	1 cut(s)	170
BfrI	CTTAAG	1 cut(s)	266
BmcAI	AGTACT	1 cut(s)	353
BmgBI	CACGTC	1 cut(s)	190
BmiI	GGNNCC	3 cut(s)	52, 239, 393
BmsI	GCATC	3 cut(s)	144, 289, 331
BsaWI	WCCGGW	1 cut(s)	394
Bse1I	ACTGG	3 cut(s)	32, 251, 437
BseGI	GGATG	2 cut(s)	280, 317
BseNI	ACTGG	3 cut(s)	32, 251, 437
BshNI	GGYRCC	2 cut(s)	50, 391
BsiSI	CCGG	2 cut(s)	213, 395
BsmAI	GTCTC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	232, 237
BspACI	CCGC	1 cut(s)	327
BspLI	GGNNCC	3 cut(s)	52, 239, 393
BspPI	GGATC	2 cut(s)	232, 245
BspT107I	GGYRCC	2 cut(s)	50, 391
BspTI	CTTAAG	1 cut(s)	266
BsrI	ACTGG	3 cut(s)	32, 251, 437
BssMI	GATC	2 cut(s)	232, 237
Bst4CI	ACNGT	2 cut(s)	7, 184
BstAFI	CTTAAG	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	280, 317
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	2 cut(s)	120, 169
BstKTI	GATC	2 cut(s)	235, 240
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	2 cut(s)	232, 237
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	280, 317
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	2 cut(s)	120, 169
Csp6I	GTAC	3 cut(s)	51, 175, 352
CviJI	RGCY	5 cut(s)	100, 159, 250, 265, 428
CviKI_1	RGCY	5 cut(s)	100, 159, 250, 265, 428
CviQI	GTAC	3 cut(s)	51, 175, 352
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	234, 239
DpnII	GATC	2 cut(s)	232, 237
Eco47III	AGCGCT	1 cut(s)	168
FaiI	YATR	2 cut(s)	107, 273
FblI	GTMKAC	1 cut(s)	192
FokI	GGATG	2 cut(s)	267, 324
FspBI	CTAG	2 cut(s)	11, 251
GlaI	GCGC	2 cut(s)	119, 168
HaeII	RGCGCY	1 cut(s)	170
HapII	CCGG	2 cut(s)	213, 395
HhaI	GCGC	2 cut(s)	120, 169
Hin6I	GCGC	2 cut(s)	118, 167
HinP1I	GCGC	2 cut(s)	118, 167
HinfI	GANTC	2 cut(s)	409, 419
HpaII	CCGG	2 cut(s)	213, 395
Hpy166II	GTNNAC	3 cut(s)	187, 193, 461
Hpy188I	TCNGA	1 cut(s)	237
Hpy8I	GTNNAC	3 cut(s)	187, 193, 461
HpyCH4III	ACNGT	2 cut(s)	7, 184
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	189
HspAI	GCGC	2 cut(s)	118, 167
KpnI	GGTACC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	232, 237
LpnPI	CCDG	8 cut(s)	45, 155, 226, 232, 275, 294, 408, 450
LweI	GCATC	3 cut(s)	144, 289, 331
MaeI	CTAG	2 cut(s)	11, 251
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	2 cut(s)	234, 239
MboI	GATC	2 cut(s)	232, 237
MflI	RGATCY	1 cut(s)	237
MluCI	AATT	2 cut(s)	150, 206
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	1 cut(s)	136
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	3 cut(s)	65, 267, 369
MspCI	CTTAAG	1 cut(s)	266
MspI	CCGG	2 cut(s)	213, 395
NdeII	GATC	2 cut(s)	232, 237
NlaIV	GGNNCC	3 cut(s)	52, 239, 393
NmuCI	GTSAC	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PspN4I	GGNNCC	3 cut(s)	52, 239, 393
PsuI	RGATCY	1 cut(s)	237
RsaI	GTAC	3 cut(s)	52, 176, 353
RsaNI	GTAC	3 cut(s)	51, 175, 352
SaqAI	TTAA	3 cut(s)	65, 267, 369
Sau3AI	GATC	2 cut(s)	232, 237
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	1 cut(s)	413
SetI	ASST	6 cut(s)	56, 147, 161, 192, 267, 430
SfaNI	GCATC	3 cut(s)	144, 289, 331
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	150, 206
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	2 cut(s)	11, 251
TaaI	ACNGT	2 cut(s)	7, 184
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	44, 348
TasI	AATT	2 cut(s)	150, 206
TatI	WGTACW	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	3 cut(s)	65, 267, 369
Tru9I	TTAA	3 cut(s)	65, 267, 369
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	288, 483
Vha464I	CTTAAG	1 cut(s)	266
XapI	RAATTY	2 cut(s)	150, 206
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	2 cut(s)	11, 251
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.