Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001682

Physical Location & Seq

Genomic Coordinates Forward (+)

18002653 .. 18008698

Gene Structure 6046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG085800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGACAGTCCTAGCACTTCTTATTCTTATTCCAGTCAATGTATCGAGTGGTACCTTATTTTTCTTAAAGAAAGAGTTGGTTTTGAGTGACATTGATAGGCTCTCTATATCAAATGTGCGCCCCAAGTCAATAAGGTTTTTTTACCACATAGGATTGGAATACTTGTTCACATTCTGGACTTGTTTCATGTTATACAAGGAGTATAACTATGTAGCATCAATGAGGTTGAAATTCTTAGCTTCACAGTGCAGGCGTGCAGAACAATTCACGGTAGTGGTTAGAAACATACCATATGTCTCTGGTCGTTCAATATCAGACACTGTGGACCAATTCTTCAAAAGAAACCACCCGAATGAGTATCTTTGTCACCAGGCAGTCTACAATGCAAACAAATTTGCCAGACTTGTGAGACAGCGAGATCGGATCCAAAACTGGCTAGACTATTACCAGCTTAAGTATGAAAGGCATCCAAACAAAAAACCAACCACAAAGACAGGATGTTTGGGTCTTTGCGGTAAAAGGGTTGATGCCATCGAGTACTACAAGCAACAGATTAAGTCATTTGATAAAAGAGAGGAAAATGGTTATTGGAAAAATAGAGGGATTGAAAGCCATGGAAGCCGAGTGTTTTGTAGTAGGGGAGGAGATTTAGAGGTGCGCTCAGAGGTAGTTCTAGGCTCTAAGAAGAGCAATGAAGGTGGGACAGATGACAGGCACCTTAGGAAGAATGTAATGGGGAGAATTGAGCTAGAGGATTTTGATTCTAATGGCTTAGTTGCAATAGGTAGATGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

265

Amino Acids

31.09

Weight (kDa)

9.53

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RSN1_TM	PF13967	2 - 67	1.6e-11	Late exocytosis, associated with Golgi transport
PHM7_cyt	PF14703	88 - 191	2.4e-27	Cytosolic domain of 10TM putative phosphate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32090
fragaria_vesca	FvH4_3g01530 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560
malus_domestica	MD06G1023400.v1.1
prunus_persica	Prupe.3G145100_v2.0.a1 Prupe.5G024400_v2.0.a1 Prupe.5G024400_v2.0.a1
pyrus_communis	pycom03g21460 pycom06g01880
rosa_chinensis	RchiOBHm_Chr2g0130361 RchiOBHm_Chr7g0212871
rosa_laevigata	RLG00000002863 RLG00000036352
rosa_multiflora	Rmu_sc0000394.1_g000051 Rmu_sc0000394.1_g000052 Rmu_sc0017945.1_g000005
rosa_roxburghii	Rroxscaffold_2G00133450 Rroxscaffold_2G00135350 Rroxscaffold_3G00246490 Rroxscaffold_4G00293800 Rroxscaffold_4G00312360 Rroxscaffold_4G00322900 Rroxscaffold_5G00343810 Rroxscaffold_5G00343840 Rroxscaffold_5G00352480 Rroxscaffold_7G00204210
rosa_rugosa	Rorug07G0137200 Rorug07G0137300
rosa_samantha	Rh2BG351500 Rh4AG085800 Rh4CG093500 Rh4DG116200 Rh5AG424600 Rh7AG268800 Rh7BG264400 Rh7CG287800 Rh7DG276900 Rh7DG324500
rosa_wichuraiana	Rw2G028960 Rw4G010010 Rw4G015390 Rw5G037750 Rw7G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	50, 714
AccI	GTMKAC	1 cut(s)	378
AciI	CCGC	1 cut(s)	513
AclWI	GGATC	2 cut(s)	418, 431
AcsI	RAATTY	2 cut(s)	230, 392
AfaI	GTAC	2 cut(s)	52, 539
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	4 cut(s)	229, 309, 337, 608
AjnI	CCWGG	1 cut(s)	369
AleI	CACNNNNGTG	1 cut(s)	272
AloI	GAACNNNNNNTCC	2 cut(s)	149, 181
AluBI	AGCT	3 cut(s)	239, 451, 748
AluI	AGCT	3 cut(s)	239, 451, 748
Alw26I	GTCTC	2 cut(s)	301, 403
AlwI	GGATC	2 cut(s)	418, 431
AlwNI	CAGNNNCTG	1 cut(s)	320
ApoI	RAATTY	2 cut(s)	230, 392
ArsI	GACNNNNNNTTYG	2 cut(s)	484, 516
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	120, 660
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	325
AxyI	CCTNAGG	1 cut(s)	719
BamHI	GGATCC	1 cut(s)	423
BanI	GGYRCC	2 cut(s)	50, 714
BccI	CCATC	2 cut(s)	539, 783
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	2 cut(s)	301, 403
BfaI	CTAG	4 cut(s)	11, 437, 674, 749
BfrI	CTTAAG	1 cut(s)	452
BmcAI	AGTACT	1 cut(s)	539
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	3 cut(s)	52, 425, 716
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	3 cut(s)	224, 475, 517
BplI	GAGNNNNNCTC	2 cut(s)	644, 676
BsaJI	CCNNGG	1 cut(s)	613
Bse1I	ACTGG	2 cut(s)	32, 437
Bse21I	CCTNAGG	1 cut(s)	719
Bse3DI	GCAATG	1 cut(s)	697
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	613
BseGI	GGATG	2 cut(s)	466, 503
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	1 cut(s)	675
BseNI	ACTGG	2 cut(s)	32, 437
BseRI	GAGGAG	1 cut(s)	657
BsgI	GTGCAG	2 cut(s)	268, 276
BshNI	GGYRCC	2 cut(s)	50, 714
BslFI	GGGAC	1 cut(s)	715
BsmAI	GTCTC	2 cut(s)	301, 403
BsmFI	GGGAC	1 cut(s)	715
Bsp143I	GATC	2 cut(s)	418, 423
Bsp19I	CCATGG	1 cut(s)	613
BspACI	CCGC	1 cut(s)	513
BspCNI	CTCAG	1 cut(s)	674
BspLI	GGNNCC	3 cut(s)	52, 425, 716
BspPI	GGATC	2 cut(s)	418, 431
BspQI	GCTCTTC	1 cut(s)	680
BspT107I	GGYRCC	2 cut(s)	50, 714
BspTI	CTTAAG	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	697
BsrI	ACTGG	2 cut(s)	32, 437
BssECI	CCNNGG	1 cut(s)	613
BssMI	GATC	2 cut(s)	418, 423
BssT1I	CCWWGG	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	4 cut(s)	7, 246, 271, 322
Bst6I	CTCTTC	1 cut(s)	680
BstAFI	CTTAAG	1 cut(s)	452
BstC8I	GCNNGC	2 cut(s)	251, 255
BstDEI	CTNAG	5 cut(s)	235, 661, 681, 719, 772
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	2 cut(s)	466, 503
BstHHI	GCGC	2 cut(s)	120, 660
BstKTI	GATC	2 cut(s)	421, 426
BstMAI	GTCTC	2 cut(s)	301, 403
BstMBI	GATC	2 cut(s)	418, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	618
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
Bsu36I	CCTNAGG	1 cut(s)	719
BtgI	CCRYGG	1 cut(s)	613
BtsCI	GGATG	2 cut(s)	466, 503
BtsIMutI	CAGTG	2 cut(s)	251, 318
Cac8I	GCNNGC	2 cut(s)	251, 255
CaiI	CAGNNNCTG	1 cut(s)	320
CfoI	GCGC	2 cut(s)	120, 660
Cfr13I	GGNCC	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	51, 538
CspCI	CAANNNNNGTGG	2 cut(s)	679, 714
CviAII	CATG	2 cut(s)	187, 614
CviJI	RGCY	9 cut(s)	100, 239, 436, 451, 612, 621, 678, 748, 771
CviKI_1	RGCY	9 cut(s)	100, 239, 436, 451, 612, 621, 678, 748, 771
CviQI	GTAC	2 cut(s)	51, 538
DdeI	CTNAG	5 cut(s)	235, 661, 681, 719, 772
DpnI	GATC	2 cut(s)	420, 425
DpnII	GATC	2 cut(s)	418, 423
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
Eco130I	CCWWGG	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	325
Eco81I	CCTNAGG	1 cut(s)	719
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	613
FaeI	CATG	2 cut(s)	190, 617
FaqI	GGGAC	1 cut(s)	715
FatI	CATG	2 cut(s)	186, 613
FauNDI	CATATG	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	378
FokI	GGATG	2 cut(s)	453, 510
FspBI	CTAG	4 cut(s)	11, 437, 674, 749
GlaI	GCGC	2 cut(s)	119, 659
HhaI	GCGC	2 cut(s)	120, 660
Hin1II	CATG	2 cut(s)	190, 617
Hin6I	GCGC	2 cut(s)	118, 658
HinP1I	GCGC	2 cut(s)	118, 658
HinfI	GANTC	1 cut(s)	761
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	3 cut(s)	168, 325, 379
Hpy188I	TCNGA	3 cut(s)	316, 423, 664
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	3 cut(s)	168, 325, 379
HpyAV	CCTTC	1 cut(s)	689
HpyCH4III	ACNGT	4 cut(s)	7, 246, 271, 322
HpyCH4V	TGCA	4 cut(s)	249, 257, 386, 779
HpyF10VI	GCNNNNNNNGC	1 cut(s)	618
HpyF3I	CTNAG	5 cut(s)	235, 661, 681, 719, 772
Hsp92II	CATG	2 cut(s)	190, 617
HspAI	GCGC	2 cut(s)	118, 658
KpnI	GGTACC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	418, 423
LguI	GCTCTTC	1 cut(s)	680
LweI	GCATC	3 cut(s)	224, 475, 517
MaeI	CTAG	4 cut(s)	11, 437, 674, 749
MaeIII	GTNAC	2 cut(s)	86, 365
MalI	GATC	2 cut(s)	420, 425
MboI	GATC	2 cut(s)	418, 423
MboII	GAAGA	3 cut(s)	325, 697, 736
MflI	RGATCY	1 cut(s)	423
MluCI	AATT	5 cut(s)	230, 263, 329, 392, 741
MnlI	CCTC	7 cut(s)	216, 568, 593, 635, 646, 658, 745
MseI	TTAA	3 cut(s)	65, 453, 555
MslI	CAYNNNNRTG	2 cut(s)	272, 351
MspCI	CTTAAG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	618
NcoI	CCATGG	1 cut(s)	613
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	2 cut(s)	418, 423
NlaIII	CATG	2 cut(s)	190, 617
NlaIV	GGNNCC	3 cut(s)	52, 425, 716
NmeAIII	GCCGAG	1 cut(s)	647
NmuCI	GTSAC	2 cut(s)	86, 365
OliI	CACNNNNGTG	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	680
PfeI	GAWTC	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	3 cut(s)	52, 425, 716
PspPI	GGNCC	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	423
RsaI	GTAC	2 cut(s)	52, 539
RsaNI	GTAC	2 cut(s)	51, 538
RseI	CAYNNNNRTG	2 cut(s)	272, 351
SapI	GCTCTTC	1 cut(s)	680
SaqAI	TTAA	3 cut(s)	65, 453, 555
Sau3AI	GATC	2 cut(s)	418, 423
Sau96I	GGNCC	1 cut(s)	325
ScaI	AGTACT	1 cut(s)	539
ScrFI	CCNGG	1 cut(s)	371
SfaNI	GCATC	3 cut(s)	224, 475, 517
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	2 cut(s)	272, 351
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	5 cut(s)	230, 263, 329, 392, 741
SsiI	CCGC	1 cut(s)	513
SspMI	CTAG	4 cut(s)	11, 437, 674, 749
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	613
TaaI	ACNGT	4 cut(s)	7, 246, 271, 322
TaqI	TCGA	2 cut(s)	44, 534
TasI	AATT	5 cut(s)	230, 263, 329, 392, 741
TatI	WGTACW	1 cut(s)	537
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	3 cut(s)	65, 453, 555
Tru9I	TTAA	3 cut(s)	65, 453, 555
TscAI	CASTG	2 cut(s)	251, 325
TseFI	GTSAC	2 cut(s)	86, 365
Tsp45I	GTSAC	2 cut(s)	86, 365
TspDTI	ATGAA	3 cut(s)	175, 474, 708
TspRI	CASTG	2 cut(s)	251, 325
Vha464I	CTTAAG	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	2 cut(s)	230, 392
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	4 cut(s)	11, 437, 674, 749
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.