Rorug07G0137200

Golgi to plasma membrane transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001682
Physical Location & Seq
Forward (+)
10841907 .. 10842560
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0137200.1

Sequence Viewer

Length: 654 bp
ATGTTAGTCCCTCTCGATGATGTGAAGCTATTATCTCGAAAGGATGCGTATACAGCGTTGATGGTTAGGTATCTTTCCAACATGGGTGTCCCTGAACACGAGCAGCCTGCTATTATTGAAGAAATATTTAAGGCTGTTGACGTGGCAGTCCCCAAGCTGCCTATTGTGGTTGCTTTTGGGGACGTGACCTTTGTGGACAGCGGCGGACTTTTTCCTGCAACTAAATCAGCAATTCAGGGTTTGGAGAAAGTGAGACGTGATAGTTTGGATGAAGCTACTTTTACACGGACGCCTTCATGTGTTATTTGCTTGGAGGGCTTTGATCACCAACAGATGATTACTCAACTGCCTTGCTCACATATTTATCATGGAGATTGCATTGTCAGTTGGCTGAAGATTAGTCACTTCTGTCCAGTCTGTCGATATTCAATGCCCTATGTCCTAGAGTGCCAACCTTTAATATCCGAAGGCCAAAGTGCAAGCCCTTCAATATTCGAGGGCTCAGGCTCAGGCCAAGGTGCAAACCCTTCAATATCCGAGGGCTCAGGCTCAAGCAGGCGGAGGACTCCTCCGCTGCTTATGATATATGCCGGCGGTGTAGTAACAGGTATAGTAATTGTTATGCTACTTTGCAGATTATGGAAGCGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

217

Amino Acids

23.71

Weight (kDa)

6.2

Isoelectric Point (pI)

55.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 99 - 141 4.4e-14 Ring finger domain
zf-RING_11 PF17123 100 - 127 1.8e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 100 - 140 4.1e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 100 - 141 6.4e-06 RING-H2 zinc finger domain
zf-C3HC4 PF00097 100 - 140 6.8e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 50
AciI CCGC 5 cut(s) 201, 204, 559, 572, 594
AcuI CTGAAG 1 cut(s) 413
AcyI GRCGYC 1 cut(s) 290
AgsI TTSAA 4 cut(s) 119, 429, 489, 531
AjiI CACGTC 3 cut(s) 142, 184, 257
AluBI AGCT 3 cut(s) 28, 157, 275
AluI AGCT 3 cut(s) 28, 157, 275
Alw26I GTCTC 1 cut(s) 247
AoxI GGCC 2 cut(s) 469, 511
ApeKI GCWGC 3 cut(s) 103, 157, 574
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AsuHPI GGTGA 1 cut(s) 317
BanII GRGCYC 2 cut(s) 503, 545
BauI CACGAG 1 cut(s) 98
BbvI GCAGC 3 cut(s) 115, 144, 561
BccI CCATC 1 cut(s) 55
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 1 cut(s) 443
BisI GCNGC 4 cut(s) 104, 158, 202, 575
BlsI GCNGC 4 cut(s) 105, 159, 203, 576
BmgBI CACGTC 3 cut(s) 142, 184, 257
BmsI GCATC 1 cut(s) 34
BplI GAGNNNNNCTC 2 cut(s) 553, 585
Bpu10I CCTNAGC 3 cut(s) 502, 508, 544
BpuEI CTTGAG 1 cut(s) 535
BsaHI GRCGYC 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 514, 537
Bse118I RCCGGY 1 cut(s) 590
Bse1I ACTGG 1 cut(s) 413
BseDI CCNNGG 2 cut(s) 514, 537
BseGI GGATG 2 cut(s) 49, 274
BseMII CTCAG 3 cut(s) 516, 522, 558
BseNI ACTGG 1 cut(s) 413
BseRI GAGGAG 1 cut(s) 558
BseXI GCAGC 3 cut(s) 115, 144, 561
BshFI GGCC 2 cut(s) 471, 513
BsiSI CCGG 1 cut(s) 591
BslFI GGGAC 3 cut(s) 74, 134, 194
BsmAI GTCTC 1 cut(s) 247
BsmBI CGTCTC 1 cut(s) 247
BsmFI GGGAC 3 cut(s) 74, 134, 194
BsnI GGCC 2 cut(s) 471, 513
Bsp1286I GDGCHC 2 cut(s) 503, 545
Bsp143I GATC 1 cut(s) 322
BspACI CCGC 5 cut(s) 201, 204, 559, 572, 594
BspANI GGCC 2 cut(s) 471, 513
BspCNI CTCAG 3 cut(s) 515, 521, 557
BsrFI RCCGGY 1 cut(s) 590
BsrI ACTGG 1 cut(s) 413
BssAI RCCGGY 1 cut(s) 590
BssECI CCNNGG 2 cut(s) 514, 537
BssMI GATC 1 cut(s) 322
BssNAI GTATAC 1 cut(s) 51
BssNI GRCGYC 1 cut(s) 290
BssSI CACGAG 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 514
Bst1107I GTATAC 1 cut(s) 51
Bst2BI CACGAG 1 cut(s) 98
BstACI GRCGYC 1 cut(s) 290
BstC8I GCNNGC 4 cut(s) 108, 481, 557, 592
BstDEI CTNAG 3 cut(s) 502, 508, 544
BstF5I GGATG 2 cut(s) 49, 274
BstKTI GATC 1 cut(s) 325
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 2 cut(s) 53, 315
BstV1I GCAGC 3 cut(s) 115, 144, 561
BstZ17I GTATAC 1 cut(s) 51
BsuRI GGCC 2 cut(s) 471, 513
BtrI CACGTC 3 cut(s) 142, 184, 257
BtsCI GGATG 2 cut(s) 49, 274
Cac8I GCNNGC 4 cut(s) 108, 481, 557, 592
Cfr10I RCCGGY 1 cut(s) 590
CseI GACGC 1 cut(s) 298
CviAII CATG 3 cut(s) 82, 297, 368
DdeI CTNAG 3 cut(s) 502, 508, 544
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
EciI GGCGGA 2 cut(s) 219, 574
Eco130I CCWWGG 1 cut(s) 514
Eco24I GRGCYC 2 cut(s) 503, 545
Eco57I CTGAAG 1 cut(s) 413
EcoT14I CCWWGG 1 cut(s) 514
EcoT38I GRGCYC 2 cut(s) 503, 545
ErhI CCWWGG 1 cut(s) 514
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 3 cut(s) 85, 300, 371
FaqI GGGAC 3 cut(s) 74, 134, 194
FatI CATG 3 cut(s) 81, 296, 367
FbaI TGATCA 1 cut(s) 322
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 4 cut(s) 104, 158, 202, 575
FokI GGATG 2 cut(s) 56, 281
FriOI GRGCYC 2 cut(s) 503, 545
Fsp4HI GCNGC 4 cut(s) 104, 158, 202, 575
FspBI CTAG 1 cut(s) 443
GluI GCNGC 4 cut(s) 104, 158, 202, 575
HaeIII GGCC 2 cut(s) 471, 513
HapII CCGG 1 cut(s) 591
HgaI GACGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 3 cut(s) 85, 300, 371
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 1 cut(s) 565
HpaII CCGG 1 cut(s) 591
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 3 cut(s) 51, 139, 196
Hpy188I TCNGA 2 cut(s) 466, 538
Hpy188III TCNNGA 2 cut(s) 14, 36
Hpy8I GTNNAC 3 cut(s) 51, 139, 196
HpyAV CCTTC 4 cut(s) 303, 461, 495, 537
HpyCH4IV ACGT 3 cut(s) 141, 183, 256
HpyCH4V TGCA 5 cut(s) 218, 378, 479, 521, 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 315
HpyF3I CTNAG 3 cut(s) 502, 508, 544
HpySE526I ACGT 3 cut(s) 141, 183, 256
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 3 cut(s) 85, 300, 371
KroI GCCGGC 1 cut(s) 590
KroNI GCCGGC 1 cut(s) 592
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 1 cut(s) 322
Lsp1109I GCAGC 3 cut(s) 115, 144, 561
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 443
MaeII ACGT 3 cut(s) 141, 183, 256
MaeIII GTNAC 3 cut(s) 184, 401, 601
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 2 cut(s) 131, 406
MhlI GDGCHC 2 cut(s) 503, 545
MluCI AATT 2 cut(s) 231, 615
MlyI GAGTC 1 cut(s) 559
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 6 cut(s) 21, 307, 490, 532, 555, 579
MroNI GCCGGC 1 cut(s) 590
MseI TTAA 2 cut(s) 129, 458
MspA1I CMGCKG 2 cut(s) 201, 574
MspI CCGG 1 cut(s) 591
MwoI GCNNNNNNNGC 2 cut(s) 53, 315
NaeI GCCGGC 1 cut(s) 592
NdeII GATC 1 cut(s) 322
NgoMIV GCCGGC 1 cut(s) 590
NlaIII CATG 3 cut(s) 85, 300, 371
NmuCI GTSAC 2 cut(s) 184, 401
PdiI GCCGGC 1 cut(s) 592
PkrI GCNGC 4 cut(s) 105, 159, 203, 576
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
SaqAI TTAA 2 cut(s) 129, 458
SatI GCNGC 4 cut(s) 104, 158, 202, 575
Sau3AI GATC 1 cut(s) 322
SchI GAGTC 1 cut(s) 559
SduI GDGCHC 2 cut(s) 503, 545
SfaNI GCATC 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
Sse9I AATT 2 cut(s) 231, 615
SsiI CCGC 5 cut(s) 201, 204, 559, 572, 594
SspI AATATT 2 cut(s) 126, 492
SspMI CTAG 1 cut(s) 443
StyI CCWWGG 1 cut(s) 514
TaiI ACGT 3 cut(s) 144, 186, 259
TaqI TCGA 4 cut(s) 15, 37, 421, 495
TasI AATT 2 cut(s) 231, 615
TauI GCSGC 1 cut(s) 204
Tru1I TTAA 2 cut(s) 129, 458
Tru9I TTAA 2 cut(s) 129, 458
TseFI GTSAC 2 cut(s) 184, 401
TseI GCWGC 3 cut(s) 103, 157, 574
Tsp45I GTSAC 2 cut(s) 184, 401
TspDTI ATGAA 2 cut(s) 285, 285
TspGWI ACGGA 1 cut(s) 301
XmiI GTMKAC 1 cut(s) 50
XspI CTAG 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.