Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001682

Physical Location & Seq

Genomic Coordinates Reverse (-)

46435588 .. 46437610

Gene Structure 2023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50183

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTAGTCAACGTATTTTTGGGAAGCATAGTGACTGGAACAGCTTTTCAGCAACTGCATGCTTTCCTTCACCAATCACCTACTCAGATTCCGAGAAACATTGGAGAGACTATACCATCAAAGGCTACTTTCTTTATTACATATATAATGGTCGATGGGTGGGCTGCAATTGCTGGTGAGATTCTCCGTTTGAAGCCATTGGTTATATTTCATCTTAAGAACATGTTCTTGGTAAAAACTGAGAGAGATAGGGAGAAGGCAACAAACCCCGGTAGTGTGGATTTTCCAGAGACTCTCCCAAGTCTTCAACTATACTTCCTTCTGGGGATTGTGTATGCTGTGGTTACTCTGATCCTACTGCCTTTTATACTAGTCTTCTTTGCCTTTGCATACTTAGTCTACCGTCATCAGATAATCAATGTCTACAATCAACAATATGAAAGTGCTGCTGCATTCTGGCCACATGTTCATAGCCGCATCATAGCAAGCTTGTTGATATCTCAACTACTGTTGATGGGCTTACTAAGCACAAAAAAGGCTGCTCAATCTACCCCATTTCTTGTTGTTCTACCTATATTAACATTATCATTCCACAAATATTGCAAGTATCGTTTTGAACCTGCATTCAGAAAGTATCCACTTGAGGTAAACTTTGAAGTTATTTTTGGATCTATTGGTTTTAATGCTTTTTTATTTTTTTATATTATTTATTTTATTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

240

Amino Acids

27.53

Weight (kDa)

9.38

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RSN1_7TM	PF02714	2 - 175	3.9e-53	Calcium-dependent channel, 7TM region, putative phosphate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32090
fragaria_vesca	FvH4_3g01530 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560
malus_domestica	MD06G1023400.v1.1
prunus_persica	Prupe.3G145100_v2.0.a1 Prupe.5G024400_v2.0.a1 Prupe.5G024400_v2.0.a1
pyrus_communis	pycom03g21460 pycom06g01880
rosa_chinensis	RchiOBHm_Chr2g0130361 RchiOBHm_Chr7g0212871
rosa_laevigata	RLG00000002863 RLG00000036352
rosa_multiflora	Rmu_sc0000394.1_g000051 Rmu_sc0000394.1_g000052 Rmu_sc0017945.1_g000005
rosa_roxburghii	Rroxscaffold_2G00133450 Rroxscaffold_2G00135350 Rroxscaffold_3G00246490 Rroxscaffold_4G00293800 Rroxscaffold_4G00312360 Rroxscaffold_4G00322900 Rroxscaffold_5G00343810 Rroxscaffold_5G00343840 Rroxscaffold_5G00352480 Rroxscaffold_7G00204210
rosa_rugosa	Rorug07G0137200 Rorug07G0137300
rosa_samantha	Rh2BG351500 Rh4AG085800 Rh4CG093500 Rh4DG116200 Rh5AG424600 Rh7AG268800 Rh7BG264400 Rh7CG287800 Rh7DG276900 Rh7DG324500
rosa_wichuraiana	Rw2G028960 Rw4G010010 Rw4G015390 Rw5G037750 Rw7G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	721
Acc36I	ACCTGC	1 cut(s)	628
AccI	GTMKAC	2 cut(s)	399, 423
AciI	CCGC	1 cut(s)	475
AclWI	GGATC	2 cut(s)	346, 676
AcoI	YGGCCR	1 cut(s)	458
AflII	CTTAAG	1 cut(s)	215
AflIII	ACRYGT	2 cut(s)	222, 463
AgsI	TTSAA	4 cut(s)	193, 308, 617, 656
AhlI	ACTAGT	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	4 cut(s)	212, 244, 648, 680
AluBI	AGCT	2 cut(s)	44, 489
AluI	AGCT	2 cut(s)	44, 489
Alw26I	GTCTC	2 cut(s)	101, 284
AlwI	GGATC	2 cut(s)	346, 676
AlwNI	CAGNNNCTG	1 cut(s)	55
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	4 cut(s)	164, 446, 449, 539
Asp700I	GAANNNNTTC	1 cut(s)	224
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	3 cut(s)	62, 69, 188
BalI	TGGCCA	1 cut(s)	460
BbsI	GAAGAC	2 cut(s)	296, 367
BbvI	GCAGC	4 cut(s)	151, 433, 436, 526
BccI	CCATC	3 cut(s)	124, 149, 508
BciVI	GTATCC	1 cut(s)	645
BcnI	CCSGG	1 cut(s)	270
BcoDI	GTCTC	2 cut(s)	101, 284
BcuI	ACTAGT	1 cut(s)	370
BfaI	CTAG	1 cut(s)	371
BfrI	CTTAAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	628
BfuI	GTATCC	1 cut(s)	645
BisI	GCNGC	5 cut(s)	165, 447, 450, 475, 540
BlsI	GCNGC	5 cut(s)	166, 448, 451, 476, 541
Bme1390I	CCNGG	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	486
BpiI	GAAGAC	2 cut(s)	296, 367
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	268
BseMII	CTCAG	2 cut(s)	98, 231
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	4 cut(s)	151, 433, 436, 526
BshFI	GGCC	1 cut(s)	460
BsiSI	CCGG	1 cut(s)	270
BsmAI	GTCTC	2 cut(s)	101, 284
BsmI	GAATGC	2 cut(s)	452, 623
BsnI	GGCC	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	351, 668
BspACI	CCGC	1 cut(s)	475
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	2 cut(s)	97, 232
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	2 cut(s)	346, 676
BspTI	CTTAAG	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	2 cut(s)	351, 668
Bst4CI	ACNGT	2 cut(s)	404, 510
BstAFI	CTTAAG	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	60, 487
BstDEI	CTNAG	4 cut(s)	84, 240, 394, 524
BstKTI	GATC	2 cut(s)	354, 671
BstMAI	GTCTC	2 cut(s)	101, 284
BstMBI	GATC	2 cut(s)	351, 668
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 525
BstNSI	RCATGY	3 cut(s)	62, 226, 467
BstSCI	CCNGG	1 cut(s)	268
BstV1I	GCAGC	4 cut(s)	151, 433, 436, 526
BstV2I	GAAGAC	2 cut(s)	296, 367
BstX2I	RGATCY	1 cut(s)	668
BstYI	RGATCY	1 cut(s)	668
BsuI	GTATCC	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	460
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	2 cut(s)	60, 487
CaiI	CAGNNNCTG	1 cut(s)	55
CspCI	CAANNNNNGTGG	2 cut(s)	581, 616
CviAII	CATG	3 cut(s)	59, 223, 464
CviJI	RGCY	9 cut(s)	44, 125, 164, 196, 460, 474, 489, 519, 539
CviKI_1	RGCY	9 cut(s)	44, 125, 164, 196, 460, 474, 489, 519, 539
DdeI	CTNAG	4 cut(s)	84, 240, 394, 524
DpnI	GATC	2 cut(s)	353, 670
DpnII	GATC	2 cut(s)	351, 668
EaeI	YGGCCR	1 cut(s)	458
Eco32I	GATATC	1 cut(s)	498
EcoRV	GATATC	1 cut(s)	498
FaeI	CATG	3 cut(s)	62, 226, 467
FatI	CATG	3 cut(s)	58, 222, 463
FblI	GTMKAC	2 cut(s)	399, 423
Fnu4HI	GCNGC	5 cut(s)	165, 447, 450, 475, 540
Fsp4HI	GCNGC	5 cut(s)	165, 447, 450, 475, 540
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	5 cut(s)	165, 447, 450, 475, 540
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	3 cut(s)	62, 226, 467
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	3 cut(s)	88, 181, 292
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	3 cut(s)	62, 69, 188
Hpy166II	GTNNAC	4 cut(s)	10, 400, 424, 649
Hpy188I	TCNGA	5 cut(s)	87, 93, 351, 411, 629
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	4 cut(s)	10, 400, 424, 649
HpyAV	CCTTC	3 cut(s)	77, 250, 329
HpyCH4III	ACNGT	2 cut(s)	404, 510
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	6 cut(s)	58, 167, 389, 452, 603, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 525
HpyF3I	CTNAG	4 cut(s)	84, 240, 394, 524
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	62, 226, 467
Kzo9I	GATC	2 cut(s)	351, 668
LpnPI	CCDG	7 cut(s)	21, 159, 283, 300, 308, 442, 633
Lsp1109I	GCAGC	4 cut(s)	151, 433, 436, 526
LweI	GCATC	1 cut(s)	486
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	31, 343
MalI	GATC	2 cut(s)	353, 670
MboI	GATC	2 cut(s)	351, 668
MboII	GAAGA	2 cut(s)	296, 367
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	1 cut(s)	668
MlsI	TGGCCA	1 cut(s)	460
MluCI	AATT	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	460
MlyI	GAGTC	1 cut(s)	286
MnlI	CCTC	1 cut(s)	637
Mox20I	TGGCCA	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	460
MseI	TTAA	3 cut(s)	216, 578, 681
Msp20I	TGGCCA	1 cut(s)	460
MspCI	CTTAAG	1 cut(s)	215
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	270
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	2 cut(s)	452, 623
MwoI	GCNNNNNNNGC	2 cut(s)	170, 525
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	2 cut(s)	351, 668
NlaIII	CATG	3 cut(s)	62, 226, 467
NmuCI	GTSAC	1 cut(s)	31
NspI	RCATGY	3 cut(s)	62, 226, 467
PaeI	GCATGC	1 cut(s)	62
PciI	ACATGT	2 cut(s)	222, 463
PctI	GAATGC	2 cut(s)	452, 623
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	88, 181
PkrI	GCNGC	5 cut(s)	166, 448, 451, 476, 541
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PscI	ACATGT	2 cut(s)	222, 463
PsiI	TTATAA	1 cut(s)	721
PstNI	CAGNNNCTG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	668
SaqAI	TTAA	3 cut(s)	216, 578, 681
SatI	GCNGC	5 cut(s)	165, 447, 450, 475, 540
Sau3AI	GATC	2 cut(s)	351, 668
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	270
SetI	ASST	7 cut(s)	15, 46, 82, 491, 574, 622, 648
SfaNI	GCATC	1 cut(s)	486
SmlI	CTYRAG	2 cut(s)	215, 641
SmoI	CTYRAG	2 cut(s)	215, 641
SpeI	ACTAGT	1 cut(s)	370
SphI	GCATGC	1 cut(s)	62
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	1 cut(s)	475
SspI	AATATT	1 cut(s)	599
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	268
TaaI	ACNGT	2 cut(s)	404, 510
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	168
TauI	GCSGC	1 cut(s)	477
TfiI	GAWTC	2 cut(s)	88, 181
Tru1I	TTAA	3 cut(s)	216, 578, 681
Tru9I	TTAA	3 cut(s)	216, 578, 681
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	4 cut(s)	164, 446, 449, 539
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	200, 453, 458
TspGWI	ACGGA	1 cut(s)	176
Vha464I	CTTAAG	1 cut(s)	215
XceI	RCATGY	3 cut(s)	62, 226, 467
XmiI	GTMKAC	2 cut(s)	399, 423
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.