Rw5G037750

Golgi to plasma membrane transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001682
Physical Location & Seq
Forward (+)
66450749 .. 66460423
9675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G037750.1

Sequence Viewer

Length: 1422 bp
ATGTCAAAAGCATTGGACCAGAAGAAGAATGTTGTTATCCTAACAATCAAGAGGTGCGCGACCAAAGTGAGCAGCTTGAAGATTTTTGTTCCAATGACAGTCCTAGCACTTCTTATTCTTATTCCAGTCAATGTATCGAGTGGTACCTTATTTTTCTTAAAGAAAGAGTTGGTTTTGAGTGACATTGATAGGCTCTCTATATCAAATGTGCGCCCCAAGTCAATAAGGTTTTTTTACCACATAGGATTGGAATACTTGTTCACATTCTGGACTTGTTTCATGTTATACAAGGAGTATAACTATGTAGCATCAATGAGGTTGAAATTCTTAGCTTCACAGCGCAGGCGTGCAGAACAGTTCACGGTAGTGGTTAGAAACATACCATATGTCTCTGGTCGTTCAATATCAGACACTGTGGACCAATTCTTCAAAAGAAACCACCCGAATGAGTATCTTTGTCACCAGGCAGTCTACAATGCAAACAAATTTGCCAGACTTGTGAGACAGCGAGATCGGATCCAAAACTGGCTAGACTATTACCAGCTTAAGTATGAAAGGCATCCAAACAAAAAACCAACCACAAAGACAGGATGTTTGGGTCTTTGCGGTAAAAGGGTTGATGCCATCGAGTACTACAAGCAACAGATTAAGTCATTTGATAAAAGAATGGCACTGGAACAAGAAAAGATTCTCAAAGACTCCAAAGCTCTTTTGCCAGTTGCTTTTGTGTCATTTAGTTCACGTATTGTTACATGTCATATCCCATTGCACATTTTATCTTTTTCACTAGTATTGTTACATGTCATATCCCATTGCACAACTCATCTGCTTTGGGCTTCCTGTTACTGTTCATCTTTCCCATGGCATATCAGAAACCTTGGAATATTTCTGAAATTCATCAAGTCATTTCTACAGGGTTTTCTTCCTGGTCTTGCCCTTAAAATATTTTTGTACATTCTCCCGACCGTATTAATGATCATGTCAAAAATTGAGGGGCATATTGCATTATCAACCCTAGAACGGAGAACAGCAGCCAAATACTATTACTTTATGTTAGTCAACGTATTTTTGGGAAGCATAGTGACTGGAACAGCTTTTCAGCAACTGCATGCTTTCCTTCACCAATCACCTACTCAGATTCCGAGAAACATTGGAGAGACTATACCATCAAAGGCTACTTTCTTTATTACATATATAATGGTCGATGGGTGGGCTGCAATTGCTGGTGAGATTCTCCGTTTGAAGCCATTGGTTATATTTCATCTTAAGAACATGTTCTTGGTAAAAACTGAGAGAGATAGGGAGAAGGCAACAAACCCCGGTAGTGTGGATTTTCCAGAGACTCTCCCAAGTTTCAACTATACTTCCTTCTGGGGATTGTGTATGCTGTGGTTACTCCGATCCTACTGCCTTTTATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

473

Amino Acids

54.96

Weight (kDa)

9.79

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RSN1_TM PF13967 25 - 98 7e-14 Late exocytosis, associated with Golgi transport
PHM7_cyt PF14703 119 - 249 9.6e-34 Cytosolic domain of 10TM putative phosphate transporter
RSN1_7TM PF02714 274 - 456 1.5e-43 Calcium-dependent channel, 7TM region, putative phosphate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 471
AccII CGCG 1 cut(s) 59
AciI CCGC 1 cut(s) 606
AclWI GGATC 3 cut(s) 511, 524, 1395
AcsI RAATTY 3 cut(s) 323, 485, 893
AfaI GTAC 3 cut(s) 145, 632, 953
AfiI CCNNNNNNNGG 1 cut(s) 1020
AflII CTTAAG 2 cut(s) 545, 1265
AflIII ACRYGT 3 cut(s) 752, 799, 1272
AgsI TTSAA 6 cut(s) 79, 322, 402, 430, 1243, 1357
AhlI ACTAGT 1 cut(s) 787
AjnI CCWGG 2 cut(s) 462, 925
AjuI GAANNNNNNNTTGG 2 cut(s) 1262, 1294
AleI CACNNNNGTG 1 cut(s) 365
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
AluBI AGCT 5 cut(s) 75, 332, 544, 707, 1094
AluI AGCT 5 cut(s) 75, 332, 544, 707, 1094
Alw26I GTCTC 4 cut(s) 394, 496, 1151, 1334
AlwI GGATC 3 cut(s) 511, 524, 1395
AlwNI CAGNNNCTG 2 cut(s) 413, 1105
ApeKI GCWGC 3 cut(s) 72, 1031, 1214
ApoI RAATTY 3 cut(s) 323, 485, 893
ArsI GACNNNNNNTTYG 2 cut(s) 577, 609
AseI ATTAAT 1 cut(s) 971
Asp700I GAANNNNTTC 2 cut(s) 687, 1274
Asp718I GGTACC 1 cut(s) 143
AspLEI GCGC 3 cut(s) 59, 213, 342
AspS9I GGNCC 2 cut(s) 16, 418
AsuC2I CCSGG 1 cut(s) 1320
AsuHPI GGTGA 4 cut(s) 452, 1112, 1119, 1238
AvaII GGWCC 2 cut(s) 16, 418
BamHI GGATCC 1 cut(s) 516
BanI GGYRCC 1 cut(s) 143
BbvI GCAGC 3 cut(s) 84, 1043, 1201
BccI CCATC 3 cut(s) 632, 1174, 1199
BcgI CGANNNNNNTGC 1 cut(s) 1389
BciT130I CCWGG 2 cut(s) 464, 927
BclI TGATCA 1 cut(s) 975
BcnI CCSGG 1 cut(s) 1320
BcoDI GTCTC 4 cut(s) 394, 496, 1151, 1334
BcuI ACTAGT 1 cut(s) 787
BfaI CTAG 5 cut(s) 104, 530, 788, 1016, 1420
BfmI CTRYAG 1 cut(s) 911
BfrI CTTAAG 2 cut(s) 545, 1265
BisI GCNGC 3 cut(s) 73, 1032, 1215
BlsI GCNGC 3 cut(s) 74, 1033, 1216
BmcAI AGTACT 1 cut(s) 632
Bme1390I CCNGG 3 cut(s) 464, 927, 1320
Bme18I GGWCC 2 cut(s) 16, 418
BmgT120I GGNCC 2 cut(s) 16, 418
BmiI GGNNCC 2 cut(s) 145, 518
BmrFI CCNGG 3 cut(s) 464, 927, 1320
BmsI GCATC 3 cut(s) 317, 568, 610
BpuMI CCSGG 1 cut(s) 1320
BsaAI YACGTR 1 cut(s) 743
BsaJI CCNNGG 3 cut(s) 860, 877, 1318
Bsc4I CCNNNNNNNGG 1 cut(s) 1020
Bse1I ACTGG 5 cut(s) 125, 530, 678, 716, 1090
Bse3DI GCAATG 2 cut(s) 764, 811
BseBI CCWGG 2 cut(s) 464, 927
BseDI CCNNGG 3 cut(s) 860, 877, 1318
BseGI GGATG 2 cut(s) 559, 596
BseLI CCNNNNNNNGG 1 cut(s) 1020
BseMI GCAATG 2 cut(s) 764, 811
BseMII CTCAG 2 cut(s) 1148, 1281
BseNI ACTGG 5 cut(s) 125, 530, 678, 716, 1090
BseXI GCAGC 3 cut(s) 84, 1043, 1201
BsgI GTGCAG 1 cut(s) 369
Bsh1236I CGCG 1 cut(s) 59
Bsh1285I CGRYCG 1 cut(s) 966
BshNI GGYRCC 1 cut(s) 143
BsiEI CGRYCG 1 cut(s) 966
BsiSI CCGG 1 cut(s) 1320
BslI CCNNNNNNNGG 1 cut(s) 1020
BsmAI GTCTC 4 cut(s) 394, 496, 1151, 1334
Bsp1407I TGTACA 1 cut(s) 951
Bsp143I GATC 4 cut(s) 511, 516, 975, 1400
Bsp19I CCATGG 1 cut(s) 860
BspACI CCGC 1 cut(s) 606
BspCNI CTCAG 2 cut(s) 1147, 1282
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 2 cut(s) 145, 518
BspPI GGATC 3 cut(s) 511, 524, 1395
BspT107I GGYRCC 1 cut(s) 143
BspTI CTTAAG 2 cut(s) 545, 1265
BsrDI GCAATG 2 cut(s) 764, 811
BsrGI TGTACA 1 cut(s) 951
BsrI ACTGG 5 cut(s) 125, 530, 678, 716, 1090
BssECI CCNNGG 3 cut(s) 860, 877, 1318
BssMI GATC 4 cut(s) 511, 516, 975, 1400
BssT1I CCWWGG 2 cut(s) 860, 877
Bst2UI CCWGG 2 cut(s) 464, 927
Bst4CI ACNGT 6 cut(s) 100, 357, 364, 415, 848, 967
BstAFI CTTAAG 2 cut(s) 545, 1265
BstAUI TGTACA 1 cut(s) 951
BstBAI YACGTR 1 cut(s) 743
BstC8I GCNNGC 3 cut(s) 344, 348, 1110
BstDEI CTNAG 3 cut(s) 328, 1134, 1290
BstDSI CCRYGG 1 cut(s) 860
BstF5I GGATG 2 cut(s) 559, 596
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 3 cut(s) 59, 213, 342
BstKTI GATC 4 cut(s) 514, 519, 978, 1403
BstMAI GTCTC 4 cut(s) 394, 496, 1151, 1334
BstMBI GATC 4 cut(s) 511, 516, 975, 1400
BstMCI CGRYCG 1 cut(s) 966
BstMWI GCNNNNNNNGC 1 cut(s) 1220
BstNI CCWGG 2 cut(s) 464, 927
BstNSI RCATGY 4 cut(s) 756, 803, 1112, 1276
BstSCI CCNGG 3 cut(s) 462, 925, 1318
BstSFI CTRYAG 1 cut(s) 911
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 3 cut(s) 84, 1043, 1201
BstX2I RGATCY 1 cut(s) 516
BstYI RGATCY 1 cut(s) 516
BtgI CCRYGG 1 cut(s) 860
BtsCI GGATG 2 cut(s) 559, 596
BtsIMutI CAGTG 2 cut(s) 411, 671
Cac8I GCNNGC 3 cut(s) 344, 348, 1110
CaiI CAGNNNCTG 2 cut(s) 413, 1105
CfoI GCGC 3 cut(s) 59, 213, 342
Cfr13I GGNCC 2 cut(s) 16, 418
Csp6I GTAC 3 cut(s) 144, 631, 952
CviAII CATG 7 cut(s) 280, 753, 800, 861, 979, 1109, 1273
CviQI GTAC 3 cut(s) 144, 631, 952
DdeI CTNAG 3 cut(s) 328, 1134, 1290
DpnI GATC 4 cut(s) 513, 518, 977, 1402
DpnII GATC 4 cut(s) 511, 516, 975, 1400
Eco130I CCWWGG 2 cut(s) 860, 877
Eco47I GGWCC 2 cut(s) 16, 418
EcoRII CCWGG 2 cut(s) 462, 925
EcoT14I CCWWGG 2 cut(s) 860, 877
ErhI CCWWGG 2 cut(s) 860, 877
FaeI CATG 7 cut(s) 283, 756, 803, 864, 982, 1112, 1276
FatI CATG 7 cut(s) 279, 752, 799, 860, 978, 1108, 1272
FauNDI CATATG 1 cut(s) 385
FbaI TGATCA 1 cut(s) 975
FblI GTMKAC 1 cut(s) 471
Fnu4HI GCNGC 3 cut(s) 73, 1032, 1215
FokI GGATG 2 cut(s) 546, 603
Fsp4HI GCNGC 3 cut(s) 73, 1032, 1215
FspBI CTAG 5 cut(s) 104, 530, 788, 1016, 1420
GlaI GCGC 3 cut(s) 58, 212, 341
GluI GCNGC 3 cut(s) 73, 1032, 1215
HapII CCGG 1 cut(s) 1320
HhaI GCGC 3 cut(s) 59, 213, 342
Hin1II CATG 7 cut(s) 283, 756, 803, 864, 982, 1112, 1276
Hin6I GCGC 3 cut(s) 57, 211, 340
HinP1I GCGC 3 cut(s) 57, 211, 340
HincII GTYRAC 1 cut(s) 1060
HindII GTYRAC 1 cut(s) 1060
HinfI GANTC 5 cut(s) 688, 698, 1138, 1231, 1342
HpaII CCGG 1 cut(s) 1320
HphI GGTGA 4 cut(s) 452, 1112, 1119, 1238
Hpy166II GTNNAC 6 cut(s) 261, 360, 418, 472, 740, 1060
Hpy188I TCNGA 7 cut(s) 409, 516, 872, 891, 1137, 1143, 1400
Hpy188III TCNNGA 4 cut(s) 49, 268, 961, 1337
Hpy8I GTNNAC 6 cut(s) 261, 360, 418, 472, 740, 1060
HpyAV CCTTC 3 cut(s) 1127, 1300, 1378
HpyCH4III ACNGT 6 cut(s) 100, 357, 364, 415, 848, 967
HpyCH4IV ACGT 2 cut(s) 742, 1062
HpyCH4V TGCA 7 cut(s) 350, 479, 769, 816, 1004, 1108, 1217
HpyF10VI GCNNNNNNNGC 1 cut(s) 1220
HpyF3I CTNAG 3 cut(s) 328, 1134, 1290
HpySE526I ACGT 2 cut(s) 742, 1062
Hsp92II CATG 7 cut(s) 283, 756, 803, 864, 982, 1112, 1276
HspAI GCGC 3 cut(s) 57, 211, 340
KpnI GGTACC 1 cut(s) 147
Ksp22I TGATCA 1 cut(s) 975
Kzo9I GATC 4 cut(s) 511, 516, 975, 1400
Lsp1109I GCAGC 3 cut(s) 84, 1043, 1201
LweI GCATC 3 cut(s) 317, 568, 610
MaeI CTAG 5 cut(s) 104, 530, 788, 1016, 1420
MaeII ACGT 2 cut(s) 742, 1062
MaeIII GTNAC 7 cut(s) 179, 458, 748, 795, 842, 1081, 1392
MalI GATC 4 cut(s) 513, 518, 977, 1402
MboI GATC 4 cut(s) 511, 516, 975, 1400
MboII GAAGA 5 cut(s) 34, 37, 91, 418, 914
MfeI CAATTG 1 cut(s) 1218
MflI RGATCY 1 cut(s) 516
MluCI AATT 6 cut(s) 323, 422, 485, 893, 987, 1218
MlyI GAGTC 2 cut(s) 692, 1336
MnlI CCTC 3 cut(s) 45, 309, 985
MroXI GAANNNNTTC 2 cut(s) 687, 1274
MseI TTAA 6 cut(s) 158, 546, 648, 939, 971, 1266
MslI CAYNNNNRTG 2 cut(s) 365, 444
MspCI CTTAAG 2 cut(s) 545, 1265
MspI CCGG 1 cut(s) 1320
MspR9I CCNGG 3 cut(s) 464, 927, 1320
MunI CAATTG 1 cut(s) 1218
MvaI CCWGG 2 cut(s) 464, 927
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 1220
NciI CCSGG 1 cut(s) 1320
NcoI CCATGG 1 cut(s) 860
NdeI CATATG 1 cut(s) 385
NdeII GATC 4 cut(s) 511, 516, 975, 1400
NlaIII CATG 7 cut(s) 283, 756, 803, 864, 982, 1112, 1276
NlaIV GGNNCC 2 cut(s) 145, 518
NmuCI GTSAC 3 cut(s) 179, 458, 1081
NspI RCATGY 4 cut(s) 756, 803, 1112, 1276
OliI CACNNNNGTG 1 cut(s) 365
PaeI GCATGC 1 cut(s) 1112
PciI ACATGT 3 cut(s) 752, 799, 1272
PdmI GAANNNNTTC 2 cut(s) 687, 1274
PfeI GAWTC 3 cut(s) 688, 1138, 1231
PkrI GCNGC 3 cut(s) 74, 1033, 1216
PleI GAGTC 2 cut(s) 692, 1336
PpsI GAGTC 2 cut(s) 692, 1336
Ppu21I YACGTR 1 cut(s) 743
PscI ACATGT 3 cut(s) 752, 799, 1272
PshBI ATTAAT 1 cut(s) 971
Psp6I CCWGG 2 cut(s) 462, 925
PspGI CCWGG 2 cut(s) 462, 925
PspN4I GGNNCC 2 cut(s) 145, 518
PspPI GGNCC 2 cut(s) 16, 418
PstNI CAGNNNCTG 2 cut(s) 413, 1105
PsuI RGATCY 1 cut(s) 516
RsaI GTAC 3 cut(s) 145, 632, 953
RsaNI GTAC 3 cut(s) 144, 631, 952
RseI CAYNNNNRTG 2 cut(s) 365, 444
SaqAI TTAA 6 cut(s) 158, 546, 648, 939, 971, 1266
SatI GCNGC 3 cut(s) 73, 1032, 1215
Sau3AI GATC 4 cut(s) 511, 516, 975, 1400
Sau96I GGNCC 2 cut(s) 16, 418
ScaI AGTACT 1 cut(s) 632
SchI GAGTC 2 cut(s) 692, 1336
ScrFI CCNGG 3 cut(s) 464, 927, 1320
SfaNI GCATC 3 cut(s) 317, 568, 610
SfcI CTRYAG 1 cut(s) 911
SinI GGWCC 2 cut(s) 16, 418
SmiMI CAYNNNNRTG 2 cut(s) 365, 444
SmlI CTYRAG 2 cut(s) 545, 1265
SmoI CTYRAG 2 cut(s) 545, 1265
SpeI ACTAGT 1 cut(s) 787
SphI GCATGC 1 cut(s) 1112
Sse9I AATT 6 cut(s) 323, 422, 485, 893, 987, 1218
SsiI CCGC 1 cut(s) 606
SspI AATATT 2 cut(s) 885, 945
SspMI CTAG 5 cut(s) 104, 530, 788, 1016, 1420
StyD4I CCNGG 3 cut(s) 462, 925, 1318
StyI CCWWGG 2 cut(s) 860, 877
TaaI ACNGT 6 cut(s) 100, 357, 364, 415, 848, 967
TaiI ACGT 2 cut(s) 745, 1065
TaqI TCGA 3 cut(s) 137, 627, 1203
TasI AATT 6 cut(s) 323, 422, 485, 893, 987, 1218
TatI WGTACW 2 cut(s) 630, 951
TfiI GAWTC 3 cut(s) 688, 1138, 1231
Tru1I TTAA 6 cut(s) 158, 546, 648, 939, 971, 1266
Tru9I TTAA 6 cut(s) 158, 546, 648, 939, 971, 1266
TscAI CASTG 2 cut(s) 418, 678
TseFI GTSAC 3 cut(s) 179, 458, 1081
TseI GCWGC 3 cut(s) 72, 1031, 1214
Tsp45I GTSAC 3 cut(s) 179, 458, 1081
TspDTI ATGAA 5 cut(s) 268, 567, 840, 886, 1250
TspGWI ACGGA 2 cut(s) 1036, 1226
TspRI CASTG 2 cut(s) 418, 678
Vha464I CTTAAG 2 cut(s) 545, 1265
VpaK11BI GGWCC 2 cut(s) 16, 418
VspI ATTAAT 1 cut(s) 971
XapI RAATTY 3 cut(s) 323, 485, 893
XceI RCATGY 4 cut(s) 756, 803, 1112, 1276
XmiI GTMKAC 1 cut(s) 471
XmnI GAANNNNTTC 2 cut(s) 687, 1274
XspI CTAG 5 cut(s) 104, 530, 788, 1016, 1420
ZrmI AGTACT 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.