Rh4DG116200

Golgi to plasma membrane transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001682
Physical Location & Seq
Forward (+)
18380412 .. 18401230
20819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG116200.1

Sequence Viewer

Length: 582 bp
ATGACAGTCCTAGCACTTCTTATTCTTATTCCAGTCAATGTATCGAGTGGTACCTTATTTTTCTTAAAGAAAGAGTTGGTTTTGAGTGACATTGATAGGCTCTCTATATCAAATGTGCGCCCCAAGTCAATAAGGTTTTTTTACCACATAGGATTGGAATACTTGTTCACATTCTGGACTTGTTTCATGTTATACAAGGAGTATAACTATGTAGCATCAATAAGGTTGAAATTCTTAGCTTCACAGCGCAGGCGTGCAGAACAGTTCACGGTAGTGGTTAGAAACATACCATATGTCTCTGGTCGTTCAATATCAGACACTGTGGACCAATTCTTCAAAAGAAACCACCCGAATGAGTATCTTTGTCACCAGGCAGTCTACAATGCAAACAAATTTGCCAGACTTGTGAGACAGCGAGATCTGATCCAAAACTGGCTAGACTATTACCAGCTTAAGTATGAAAGGCATCCAAACAAAAAACCAACCACAAAGACAGGATGTTTGGGTCTTTGCGGTAAAAGGGTTGATGCCATCGAGTACTACAAGCAACAGATTAAGTCATTTGATAAAAGAATGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

193

Amino Acids

22.99

Weight (kDa)

9.84

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RSN1_TM PF13967 2 - 67 8.9e-12 Late exocytosis, associated with Golgi transport
PHM7_cyt PF14703 88 - 192 4.4e-27 Cytosolic domain of 10TM putative phosphate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 378
AciI CCGC 1 cut(s) 513
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 2 cut(s) 230, 392
AfaI GTAC 2 cut(s) 52, 539
AflII CTTAAG 1 cut(s) 452
AgsI TTSAA 3 cut(s) 229, 309, 337
AjnI CCWGG 1 cut(s) 369
AleI CACNNNNGTG 1 cut(s) 272
AloI GAACNNNNNNTCC 2 cut(s) 149, 181
AluBI AGCT 2 cut(s) 239, 451
AluI AGCT 2 cut(s) 239, 451
Alw26I GTCTC 2 cut(s) 301, 403
AlwI GGATC 1 cut(s) 418
AlwNI CAGNNNCTG 1 cut(s) 320
ApoI RAATTY 2 cut(s) 230, 392
ArsI GACNNNNNNTTYG 2 cut(s) 484, 516
Asp718I GGTACC 1 cut(s) 50
AspLEI GCGC 2 cut(s) 120, 249
AspS9I GGNCC 1 cut(s) 325
AsuHPI GGTGA 1 cut(s) 359
AvaII GGWCC 1 cut(s) 325
BanI GGYRCC 1 cut(s) 50
BccI CCATC 1 cut(s) 539
BciT130I CCWGG 1 cut(s) 371
BcoDI GTCTC 2 cut(s) 301, 403
BfaI CTAG 2 cut(s) 11, 437
BfrI CTTAAG 1 cut(s) 452
BglII AGATCT 1 cut(s) 418
BmcAI AGTACT 1 cut(s) 539
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 371
BmsI GCATC 3 cut(s) 224, 475, 517
Bse1I ACTGG 2 cut(s) 32, 437
BseBI CCWGG 1 cut(s) 371
BseGI GGATG 2 cut(s) 466, 503
BseNI ACTGG 2 cut(s) 32, 437
BsgI GTGCAG 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 50
BsmAI GTCTC 2 cut(s) 301, 403
BsmI GAATGC 1 cut(s) 579
Bsp143I GATC 2 cut(s) 418, 423
BspACI CCGC 1 cut(s) 513
BspLI GGNNCC 1 cut(s) 52
BspPI GGATC 1 cut(s) 418
BspT107I GGYRCC 1 cut(s) 50
BspTI CTTAAG 1 cut(s) 452
BsrI ACTGG 2 cut(s) 32, 437
BssMI GATC 2 cut(s) 418, 423
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 4 cut(s) 7, 264, 271, 322
BstAFI CTTAAG 1 cut(s) 452
BstC8I GCNNGC 2 cut(s) 251, 255
BstDEI CTNAG 1 cut(s) 235
BstF5I GGATG 2 cut(s) 466, 503
BstHHI GCGC 2 cut(s) 120, 249
BstKTI GATC 2 cut(s) 421, 426
BstMAI GTCTC 2 cut(s) 301, 403
BstMBI GATC 2 cut(s) 418, 423
BstNI CCWGG 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BtsCI GGATG 2 cut(s) 466, 503
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 2 cut(s) 251, 255
CaiI CAGNNNCTG 1 cut(s) 320
CfoI GCGC 2 cut(s) 120, 249
Cfr13I GGNCC 1 cut(s) 325
Csp6I GTAC 2 cut(s) 51, 538
CviAII CATG 1 cut(s) 187
CviJI RGCY 4 cut(s) 100, 239, 436, 451
CviKI_1 RGCY 4 cut(s) 100, 239, 436, 451
CviQI GTAC 2 cut(s) 51, 538
DdeI CTNAG 1 cut(s) 235
DpnI GATC 2 cut(s) 420, 425
DpnII GATC 2 cut(s) 418, 423
Eco47I GGWCC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 369
FaeI CATG 1 cut(s) 190
FatI CATG 1 cut(s) 186
FauNDI CATATG 1 cut(s) 292
FblI GTMKAC 1 cut(s) 378
FokI GGATG 2 cut(s) 453, 510
FspBI CTAG 2 cut(s) 11, 437
GlaI GCGC 2 cut(s) 119, 248
HhaI GCGC 2 cut(s) 120, 249
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 2 cut(s) 118, 247
HinP1I GCGC 2 cut(s) 118, 247
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 4 cut(s) 168, 267, 325, 379
Hpy188I TCNGA 2 cut(s) 316, 423
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 4 cut(s) 168, 267, 325, 379
HpyCH4III ACNGT 4 cut(s) 7, 264, 271, 322
HpyCH4V TGCA 2 cut(s) 257, 386
HpyF3I CTNAG 1 cut(s) 235
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 2 cut(s) 118, 247
KpnI GGTACC 1 cut(s) 54
Kzo9I GATC 2 cut(s) 418, 423
LweI GCATC 3 cut(s) 224, 475, 517
MaeI CTAG 2 cut(s) 11, 437
MaeIII GTNAC 2 cut(s) 86, 365
MalI GATC 2 cut(s) 420, 425
MboI GATC 2 cut(s) 418, 423
MboII GAAGA 1 cut(s) 325
MflI RGATCY 1 cut(s) 418
MluCI AATT 3 cut(s) 230, 329, 392
MseI TTAA 3 cut(s) 65, 453, 555
MslI CAYNNNNRTG 2 cut(s) 272, 351
MspCI CTTAAG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 371
Mva1269I GAATGC 1 cut(s) 579
MvaI CCWGG 1 cut(s) 371
NdeI CATATG 1 cut(s) 292
NdeII GATC 2 cut(s) 418, 423
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 2 cut(s) 86, 365
OliI CACNNNNGTG 1 cut(s) 272
PctI GAATGC 1 cut(s) 579
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 320
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 2 cut(s) 52, 539
RsaNI GTAC 2 cut(s) 51, 538
RseI CAYNNNNRTG 2 cut(s) 272, 351
SaqAI TTAA 3 cut(s) 65, 453, 555
Sau3AI GATC 2 cut(s) 418, 423
Sau96I GGNCC 1 cut(s) 325
ScaI AGTACT 1 cut(s) 539
ScrFI CCNGG 1 cut(s) 371
SetI ASST 5 cut(s) 56, 137, 227, 241, 453
SfaNI GCATC 3 cut(s) 224, 475, 517
SinI GGWCC 1 cut(s) 325
SmiMI CAYNNNNRTG 2 cut(s) 272, 351
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 3 cut(s) 230, 329, 392
SsiI CCGC 1 cut(s) 513
SspMI CTAG 2 cut(s) 11, 437
StyD4I CCNGG 1 cut(s) 369
TaaI ACNGT 4 cut(s) 7, 264, 271, 322
TaqI TCGA 2 cut(s) 44, 534
TasI AATT 3 cut(s) 230, 329, 392
TatI WGTACW 1 cut(s) 537
Tru1I TTAA 3 cut(s) 65, 453, 555
Tru9I TTAA 3 cut(s) 65, 453, 555
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 2 cut(s) 86, 365
Tsp45I GTSAC 2 cut(s) 86, 365
TspDTI ATGAA 2 cut(s) 175, 474
TspRI CASTG 1 cut(s) 325
Vha464I CTTAAG 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 2 cut(s) 230, 392
XmiI GTMKAC 1 cut(s) 378
XspI CTAG 2 cut(s) 11, 437
ZrmI AGTACT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.