Rh5AG424600

Golgi to plasma membrane transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001682
Physical Location & Seq
Reverse (-)
73263582 .. 73284047
20466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG424600.1

Sequence Viewer

Length: 1260 bp
ATGATGCCAGCCACCGCAGGAAGGGTTCGCATGCCCCCAAACAATCGGGTACACAGTAGTGTTGCCCTTCAAACTCATGGCCTTCTCCAACTTGCTCGTATAACTGGGCCGAATTCTGACGAGGTTCGTGGGGCGTGCAAGAGGTGTGGCCGGGTTGGGCACCTCACCTATCAATTTAGGAACTTTCTGAGTGTTAAGGACAAGGTGAAGGAGGACCCTGAAGCTATCCAGGCTGATGTTGCTTCTGAGTTGGGCAAGTTGAAGGGGAAGCTGGGTAAAGCAAAGGGAAAAGATGTTGTTAAGGCTGATAGTGAGGAGGAGGATGAAGACATTGAGAGTTCAGATTCGGACTATGATTCTGATATGGAGAGGCTCATTGCTCAAAGATATGGGAAAAAGAGTTTTCGAAAGGAGAAGCTAAAAAAGAAGAACAAGGACTCGGATGTTGATGGTTCAGATACAGATTCTGGGGAGAGGAAAAAGAGAGGAAGGTCGAAGAAGAGGAGAAGCAGAAAGAGGAACATGATGATTCAGATGATTCTGAAAAGGATAGGAAGAAAAGAAGAAAGGAGAAACGGAGAAAGAGAGATGAGTGCTCGGATGAGGATGATAAACGACGTCGACGACATAAGAAGAGTAGTCTTGAAGATTTTTGTTCCAATGACAGTCCTAGCACTTCTTATTCTTATTCCAGTCAATGTATCGAGTGGTACCTTATTTTTCTTAAAGAAAGAGTTGGTTTTGAGTGACATTGATAGGCTCTCTATATCAAATGTGCGCCCCAAGTCAATAAGGTTTTTTTACCACATAGGATTGGAATACTTGTTCACATTCTGGACTTGTTTCATGTTATACAAGGAGTATAACTATGTAGCATCAATGAGGTTGAAATTCTTAGCTTCACAGCGCAGGCGTGCAGAACAGTTCACGGTAGTGGTTAGAAACATACCATATGTCTCTGGTCGTTCAATATCAGACACTGTGGACCAATTCTTCAAAAGAAACCACCCGAATGAGTATCTTTGTCACCAGGCAGTCTACAATGCAAACAAATTTGCCAGACTTGTGAGACAGCGAGATCGGATCCAAAACTGGCTAGACTATTACCAGCTTAAGTATGAAAGGCATCCAAACAAAAAACCAACCACAAAGACAGGATGTTTGGGTCTTTGCGGTAAAAGGGTTGATGCCATCGAGTACTACAAGCAACAGATTAAGTCATTTGATAAAAGACACGATTTTACAAATGAAAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

419

Amino Acids

48.91

Weight (kDa)

9.92

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RSN1_TM PF13967 212 - 287 1.6e-14 Late exocytosis, associated with Golgi transport
PHM7_cyt PF14703 308 - 414 3.2e-27 Cytosolic domain of 10TM putative phosphate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 621
Acc65I GGTACC 1 cut(s) 710
AccB1I GGYRCC 2 cut(s) 159, 710
AccI GTMKAC 2 cut(s) 621, 1038
AciI CCGC 2 cut(s) 15, 1173
AclWI GGATC 2 cut(s) 1078, 1091
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 3 cut(s) 112, 890, 1052
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 618
AfaI GTAC 3 cut(s) 51, 712, 1199
AfiI CCNNNNNNNGG 1 cut(s) 21
AflII CTTAAG 1 cut(s) 1112
AgsI TTSAA 6 cut(s) 71, 262, 646, 889, 969, 997
AjnI CCWGG 2 cut(s) 228, 1029
AleI CACNNNNGTG 2 cut(s) 57, 932
AloI GAACNNNNNNTCC 2 cut(s) 809, 841
AluBI AGCT 5 cut(s) 224, 271, 418, 899, 1111
AluI AGCT 5 cut(s) 224, 271, 418, 899, 1111
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 2 cut(s) 961, 1063
AlwI GGATC 2 cut(s) 1078, 1091
AlwNI CAGNNNCTG 2 cut(s) 467, 980
AoxI GGCC 3 cut(s) 79, 107, 148
ApoI RAATTY 3 cut(s) 112, 890, 1052
ArsI GACNNNNNNTTYG 2 cut(s) 1144, 1176
Asp718I GGTACC 1 cut(s) 710
AspLEI GCGC 2 cut(s) 780, 909
AspS9I GGNCC 3 cut(s) 107, 214, 985
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 3 cut(s) 157, 217, 1019
AsuII TTCGAA 1 cut(s) 406
AvaII GGWCC 2 cut(s) 214, 985
BaeGI GKGCMC 1 cut(s) 162
BamHI GGATCC 1 cut(s) 1083
BanI GGYRCC 2 cut(s) 159, 710
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 598
BccI CCATC 2 cut(s) 443, 1199
BciT130I CCWGG 2 cut(s) 230, 1031
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 961, 1063
BfaI CTAG 2 cut(s) 671, 1097
BfrI CTTAAG 1 cut(s) 1112
BmcAI AGTACT 1 cut(s) 1199
Bme1390I CCNGG 3 cut(s) 152, 230, 1031
Bme18I GGWCC 2 cut(s) 214, 985
BmgT120I GGNCC 3 cut(s) 107, 214, 985
BmiI GGNNCC 4 cut(s) 161, 216, 712, 1085
BmrFI CCNGG 3 cut(s) 152, 230, 1031
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 3 cut(s) 884, 1135, 1177
BmuI ACTGGG 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 333
Bpu14I TTCGAA 1 cut(s) 406
BpuMI CCSGG 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 618
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse1I ACTGG 3 cut(s) 109, 692, 1097
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 2 cut(s) 230, 1031
BseGI GGATG 6 cut(s) 328, 448, 606, 612, 1126, 1163
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 2 cut(s) 179, 237
BseNI ACTGG 3 cut(s) 109, 692, 1097
BseRI GAGGAG 3 cut(s) 329, 332, 517
BseSI GKGCMC 1 cut(s) 162
BseYI CCCAGC 1 cut(s) 271
BsgI GTGCAG 1 cut(s) 936
BshFI GGCC 3 cut(s) 81, 109, 150
BshNI GGYRCC 2 cut(s) 159, 710
BsiHKAI GWGCWC 1 cut(s) 598
BsiSI CCGG 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 21
BsmAI GTCTC 2 cut(s) 961, 1063
BsnI GGCC 3 cut(s) 81, 109, 150
Bsp119I TTCGAA 1 cut(s) 406
Bsp1286I GDGCHC 2 cut(s) 162, 598
Bsp143I GATC 2 cut(s) 1078, 1083
BspACI CCGC 2 cut(s) 15, 1173
BspANI GGCC 3 cut(s) 81, 109, 150
BspCNI CTCAG 2 cut(s) 180, 238
BspLI GGNNCC 4 cut(s) 161, 216, 712, 1085
BspPI GGATC 2 cut(s) 1078, 1091
BspT104I TTCGAA 1 cut(s) 406
BspT107I GGYRCC 2 cut(s) 159, 710
BspTI CTTAAG 1 cut(s) 1112
BsrDI GCAATG 1 cut(s) 375
BsrI ACTGG 3 cut(s) 109, 692, 1097
BssMI GATC 2 cut(s) 1078, 1083
BssNI GRCGYC 1 cut(s) 618
Bst2UI CCWGG 2 cut(s) 230, 1031
Bst4CI ACNGT 5 cut(s) 56, 667, 924, 931, 982
Bst6I CTCTTC 2 cut(s) 494, 628
BstACI GRCGYC 1 cut(s) 618
BstAFI CTTAAG 1 cut(s) 1112
BstBI TTCGAA 1 cut(s) 406
BstC8I GCNNGC 5 cut(s) 9, 32, 136, 911, 915
BstDEI CTNAG 3 cut(s) 188, 246, 895
BstF5I GGATG 6 cut(s) 328, 448, 606, 612, 1126, 1163
BstHHI GCGC 2 cut(s) 780, 909
BstKTI GATC 2 cut(s) 1081, 1086
BstMAI GTCTC 2 cut(s) 961, 1063
BstMBI GATC 2 cut(s) 1078, 1083
BstMWI GCNNNNNNNGC 2 cut(s) 230, 239
BstNI CCWGG 2 cut(s) 230, 1031
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 3 cut(s) 150, 228, 1029
BstSLI GKGCMC 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 1083
BstYI RGATCY 1 cut(s) 1083
BsuRI GGCC 3 cut(s) 81, 109, 150
BtsCI GGATG 6 cut(s) 328, 448, 606, 612, 1126, 1163
BtsIMutI CAGTG 1 cut(s) 978
Cac8I GCNNGC 5 cut(s) 9, 32, 136, 911, 915
CaiI CAGNNNCTG 2 cut(s) 467, 980
CfoI GCGC 2 cut(s) 780, 909
Cfr13I GGNCC 3 cut(s) 107, 214, 985
Csp6I GTAC 3 cut(s) 50, 711, 1198
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 4 cut(s) 31, 77, 523, 847
CviQI GTAC 3 cut(s) 50, 711, 1198
DdeI CTNAG 3 cut(s) 188, 246, 895
DpnI GATC 2 cut(s) 1080, 1085
DpnII GATC 2 cut(s) 1078, 1083
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 2 cut(s) 494, 628
EarI CTCTTC 2 cut(s) 494, 628
Eco47I GGWCC 2 cut(s) 214, 985
Eco57I CTGAAG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 228, 1029
FaeI CATG 4 cut(s) 34, 80, 526, 850
FatI CATG 4 cut(s) 30, 76, 522, 846
FauNDI CATATG 1 cut(s) 952
FblI GTMKAC 2 cut(s) 621, 1038
FokI GGATG 6 cut(s) 335, 455, 613, 619, 1113, 1170
FspBI CTAG 2 cut(s) 671, 1097
GlaI GCGC 2 cut(s) 779, 908
GsaI CCCAGC 1 cut(s) 275
HaeIII GGCC 3 cut(s) 81, 109, 150
HapII CCGG 1 cut(s) 151
HhaI GCGC 2 cut(s) 780, 909
Hin1I GRCGYC 1 cut(s) 618
Hin1II CATG 4 cut(s) 34, 80, 526, 850
Hin6I GCGC 2 cut(s) 778, 907
HinP1I GCGC 2 cut(s) 778, 907
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HinfI GANTC 6 cut(s) 344, 356, 437, 464, 529, 538
HpaII CCGG 1 cut(s) 151
HphI GGTGA 3 cut(s) 157, 217, 1019
Hpy166II GTNNAC 6 cut(s) 52, 622, 828, 927, 985, 1039
Hpy188III TCNNGA 2 cut(s) 643, 835
Hpy8I GTNNAC 6 cut(s) 52, 622, 828, 927, 985, 1039
Hpy99I CGWCG 3 cut(s) 620, 623, 626
HpyAV CCTTC 6 cut(s) 15, 77, 92, 202, 256, 483
HpyCH4III ACNGT 5 cut(s) 56, 667, 924, 931, 982
HpyCH4IV ACGT 1 cut(s) 618
HpyCH4V TGCA 3 cut(s) 138, 917, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 239
HpyF3I CTNAG 3 cut(s) 188, 246, 895
HpySE526I ACGT 1 cut(s) 618
Hsp92I GRCGYC 1 cut(s) 618
Hsp92II CATG 4 cut(s) 34, 80, 526, 850
HspAI GCGC 2 cut(s) 778, 907
KpnI GGTACC 1 cut(s) 714
Kzo9I GATC 2 cut(s) 1078, 1083
LweI GCATC 3 cut(s) 884, 1135, 1177
MaeI CTAG 2 cut(s) 671, 1097
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 2 cut(s) 746, 1025
MalI GATC 2 cut(s) 1080, 1085
MboI GATC 2 cut(s) 1078, 1083
MboII GAAGA 9 cut(s) 338, 439, 508, 511, 567, 575, 645, 658, 985
MflI RGATCY 1 cut(s) 1083
MhlI GDGCHC 2 cut(s) 162, 598
MluCI AATT 5 cut(s) 112, 173, 890, 989, 1052
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 112
MseI TTAA 6 cut(s) 195, 300, 725, 1113, 1215, 1258
MslI CAYNNNNRTG 3 cut(s) 57, 932, 1011
MspCI CTTAAG 1 cut(s) 1112
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 3 cut(s) 152, 230, 1031
MvaI CCWGG 2 cut(s) 230, 1031
MwoI GCNNNNNNNGC 2 cut(s) 230, 239
NciI CCSGG 1 cut(s) 152
NdeI CATATG 1 cut(s) 952
NdeII GATC 2 cut(s) 1078, 1083
NlaIII CATG 4 cut(s) 34, 80, 526, 850
NlaIV GGNNCC 4 cut(s) 161, 216, 712, 1085
NmuCI GTSAC 2 cut(s) 746, 1025
NspI RCATGY 1 cut(s) 34
NspV TTCGAA 1 cut(s) 406
OliI CACNNNNGTG 2 cut(s) 57, 932
PaeI GCATGC 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 621
PfeI GAWTC 5 cut(s) 344, 356, 464, 529, 538
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 228, 1029
PspFI CCCAGC 1 cut(s) 271
PspGI CCWGG 2 cut(s) 228, 1029
PspN4I GGNNCC 4 cut(s) 161, 216, 712, 1085
PspPI GGNCC 3 cut(s) 107, 214, 985
PspPPI RGGWCCY 1 cut(s) 214
PstNI CAGNNNCTG 2 cut(s) 467, 980
PsuI RGATCY 1 cut(s) 1083
RsaI GTAC 3 cut(s) 51, 712, 1199
RsaNI GTAC 3 cut(s) 50, 711, 1198
RseI CAYNNNNRTG 3 cut(s) 57, 932, 1011
SalI GTCGAC 1 cut(s) 620
SaqAI TTAA 6 cut(s) 195, 300, 725, 1113, 1215, 1258
Sau3AI GATC 2 cut(s) 1078, 1083
Sau96I GGNCC 3 cut(s) 107, 214, 985
ScaI AGTACT 1 cut(s) 1199
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 3 cut(s) 152, 230, 1031
SduI GDGCHC 2 cut(s) 162, 598
SfaNI GCATC 3 cut(s) 884, 1135, 1177
SfuI TTCGAA 1 cut(s) 406
SgrDI CGTCGACG 1 cut(s) 620
SinI GGWCC 2 cut(s) 214, 985
SmiMI CAYNNNNRTG 3 cut(s) 57, 932, 1011
SmlI CTYRAG 1 cut(s) 1112
SmoI CTYRAG 1 cut(s) 1112
SphI GCATGC 1 cut(s) 34
Sse9I AATT 5 cut(s) 112, 173, 890, 989, 1052
SsiI CCGC 2 cut(s) 15, 1173
SspMI CTAG 2 cut(s) 671, 1097
StyD4I CCNGG 3 cut(s) 150, 228, 1029
TaaI ACNGT 5 cut(s) 56, 667, 924, 931, 982
TaiI ACGT 1 cut(s) 621
TaqI TCGA 5 cut(s) 406, 494, 621, 704, 1194
TasI AATT 5 cut(s) 112, 173, 890, 989, 1052
TatI WGTACW 1 cut(s) 1197
TfiI GAWTC 5 cut(s) 344, 356, 464, 529, 538
Tru1I TTAA 6 cut(s) 195, 300, 725, 1113, 1215, 1258
Tru9I TTAA 6 cut(s) 195, 300, 725, 1113, 1215, 1258
TscAI CASTG 1 cut(s) 985
TseFI GTSAC 2 cut(s) 746, 1025
Tsp45I GTSAC 2 cut(s) 746, 1025
TspDTI ATGAA 3 cut(s) 339, 835, 1134
TspGWI ACGGA 1 cut(s) 591
TspRI CASTG 1 cut(s) 985
Vha464I CTTAAG 1 cut(s) 1112
VpaK11BI GGWCC 2 cut(s) 214, 985
XapI RAATTY 3 cut(s) 112, 890, 1052
XceI RCATGY 1 cut(s) 34
XmiI GTMKAC 2 cut(s) 621, 1038
XspI CTAG 2 cut(s) 671, 1097
ZraI GACGTC 1 cut(s) 619
ZrmI AGTACT 1 cut(s) 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.