Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001682

Physical Location & Seq

Genomic Coordinates Reverse (-)

35285816 .. 35296450

Gene Structure 10635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00312360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAGAAGAAAATAAAACTTGCAGTCTTGCACCGTTGGAGGTGCAGAGGGAGGGAGGGAATCGAGAGGAAAGTGAGCTTGAAGATTTTTGTTCCAATGACAGTCCTAGCACTTCTTATTCTTATTCCAGTCAATGTATTGAGTGGTACCTTATTTTTCTTAAAGAAAGAGTTGGTTTTGAGTGACATTGATAGGCTCTCTATATCAAATGTGCGCCCCAAGTCAATAAGGTTTTTTTACCACATAGGATTGGAATACTTGTTCACATTCTGGACTTGTTTCATGTTATACAAGGAGTATAACTATGTAGCATCAATGAGGTTGAAATTCTTAGCTTCACAGCGCAGGCGTGCAGAACAGTTCACAGCAGTCTACAATGCAAACAAATTTGCCGGACTTGTGAGACAGCGAGATCGGATCCAAAACTGGCTAGACTATTACCAGCTTAAGTATGAAAGGCATCCAAACAAAAAACCAACCACAAAGGATGTTTGGGTCTTTGCGGTAAAAGGGTTGATGCCATCGAGTACTACAAGCAACAGATTAAGTCATTTGATAAAAGAGATTCCGAGAAACATTGGAGAGACTATACCATCAAAGGCTACTTTCTTTATTACATATATAATGGTCGATGGGTGGGCTGCAATTGCTGGTGAGATTCTCCGTTTGAAGCCATTGCACAATTTTACAAATGAAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

234

Amino Acids

27.53

Weight (kDa)

10.22

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RSN1_TM	PF13967	24 - 99	1.7e-14	Late exocytosis, associated with Golgi transport
PHM7_cyt	PF14703	119 - 188	2.9e-06	Cytosolic domain of 10TM putative phosphate transporter
RSN1_7TM	PF02714	175 - 227	4.5e-09	Calcium-dependent channel, 7TM region, putative phosphate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32090
fragaria_vesca	FvH4_3g01530 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560
malus_domestica	MD06G1023400.v1.1
prunus_persica	Prupe.3G145100_v2.0.a1 Prupe.5G024400_v2.0.a1 Prupe.5G024400_v2.0.a1
pyrus_communis	pycom03g21460 pycom06g01880
rosa_chinensis	RchiOBHm_Chr2g0130361 RchiOBHm_Chr7g0212871
rosa_laevigata	RLG00000002863 RLG00000036352
rosa_multiflora	Rmu_sc0000394.1_g000051 Rmu_sc0000394.1_g000052 Rmu_sc0017945.1_g000005
rosa_roxburghii	Rroxscaffold_2G00133450 Rroxscaffold_2G00135350 Rroxscaffold_3G00246490 Rroxscaffold_4G00293800 Rroxscaffold_4G00312360 Rroxscaffold_4G00322900 Rroxscaffold_5G00343810 Rroxscaffold_5G00343840 Rroxscaffold_5G00352480 Rroxscaffold_7G00204210
rosa_rugosa	Rorug07G0137200 Rorug07G0137300
rosa_samantha	Rh2BG351500 Rh4AG085800 Rh4CG093500 Rh4DG116200 Rh5AG424600 Rh7AG268800 Rh7BG264400 Rh7CG287800 Rh7DG276900 Rh7DG324500
rosa_wichuraiana	Rw2G028960 Rw4G010010 Rw4G015390 Rw5G037750 Rw7G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	1 cut(s)	503
AclWI	GGATC	2 cut(s)	412, 425
AcsI	RAATTY	2 cut(s)	326, 386
AfaI	GTAC	2 cut(s)	148, 529
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	82, 325, 670
AloI	GAACNNNNNNTCC	2 cut(s)	245, 277
AluBI	AGCT	3 cut(s)	78, 335, 445
AluI	AGCT	3 cut(s)	78, 335, 445
Alw26I	GTCTC	2 cut(s)	397, 578
AlwI	GGATC	2 cut(s)	412, 425
ApeKI	GCWGC	1 cut(s)	641
ApoI	RAATTY	2 cut(s)	326, 386
Asp718I	GGTACC	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	216, 345
AsuHPI	GGTGA	1 cut(s)	665
BamHI	GGATCC	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	628
BccI	CCATC	3 cut(s)	529, 601, 626
BcoDI	GTCTC	2 cut(s)	397, 578
BfaI	CTAG	2 cut(s)	107, 431
BfrI	CTTAAG	1 cut(s)	446
BisI	GCNGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	643
BmcAI	AGTACT	1 cut(s)	529
BmiI	GGNNCC	2 cut(s)	148, 419
BmsI	GCATC	3 cut(s)	320, 469, 507
Bse1I	ACTGG	2 cut(s)	128, 431
Bse3DI	GCAATG	1 cut(s)	674
BseGI	GGATG	2 cut(s)	460, 493
BseMI	GCAATG	1 cut(s)	674
BseNI	ACTGG	2 cut(s)	128, 431
BseXI	GCAGC	1 cut(s)	628
BsgI	GTGCAG	2 cut(s)	64, 372
BshNI	GGYRCC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	393
BsmAI	GTCTC	2 cut(s)	397, 578
Bsp143I	GATC	2 cut(s)	412, 417
BspACI	CCGC	1 cut(s)	503
BspLI	GGNNCC	2 cut(s)	148, 419
BspPI	GGATC	2 cut(s)	412, 425
BspT107I	GGYRCC	1 cut(s)	146
BspTI	CTTAAG	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	674
BsrI	ACTGG	2 cut(s)	128, 431
BssMI	GATC	2 cut(s)	412, 417
Bst4CI	ACNGT	3 cut(s)	35, 103, 360
BstAFI	CTTAAG	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	347, 351
BstDEI	CTNAG	1 cut(s)	331
BstF5I	GGATG	2 cut(s)	460, 493
BstHHI	GCGC	2 cut(s)	216, 345
BstKTI	GATC	2 cut(s)	415, 420
BstMAI	GTCTC	2 cut(s)	397, 578
BstMBI	GATC	2 cut(s)	412, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	647
BstV1I	GCAGC	1 cut(s)	628
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	460, 493
Cac8I	GCNNGC	2 cut(s)	347, 351
CfoI	GCGC	2 cut(s)	216, 345
Csp6I	GTAC	2 cut(s)	147, 528
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	8 cut(s)	78, 196, 335, 430, 445, 602, 641, 673
CviKI_1	RGCY	8 cut(s)	78, 196, 335, 430, 445, 602, 641, 673
CviQI	GTAC	2 cut(s)	147, 528
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	2 cut(s)	414, 419
DpnII	GATC	2 cut(s)	412, 417
FaeI	CATG	1 cut(s)	286
FatI	CATG	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	642
FokI	GGATG	2 cut(s)	447, 500
Fsp4HI	GCNGC	1 cut(s)	642
FspBI	CTAG	2 cut(s)	107, 431
GlaI	GCGC	2 cut(s)	215, 344
GluI	GCNGC	1 cut(s)	642
HapII	CCGG	1 cut(s)	393
HhaI	GCGC	2 cut(s)	216, 345
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	2 cut(s)	214, 343
HinP1I	GCGC	2 cut(s)	214, 343
HinfI	GANTC	3 cut(s)	60, 565, 658
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	1 cut(s)	665
Hpy166II	GTNNAC	3 cut(s)	264, 363, 373
Hpy188I	TCNGA	2 cut(s)	417, 570
Hpy188III	TCNNGA	2 cut(s)	64, 271
Hpy8I	GTNNAC	3 cut(s)	264, 363, 373
HpyCH4III	ACNGT	3 cut(s)	35, 103, 360
HpyCH4V	TGCA	7 cut(s)	23, 31, 45, 353, 380, 644, 679
HpyF10VI	GCNNNNNNNGC	1 cut(s)	647
HpyF3I	CTNAG	1 cut(s)	331
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	2 cut(s)	214, 343
KpnI	GGTACC	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	412, 417
LpnPI	CCDG	7 cut(s)	141, 256, 331, 406, 412, 455, 636
Lsp1109I	GCAGC	1 cut(s)	628
LweI	GCATC	3 cut(s)	320, 469, 507
MaeI	CTAG	2 cut(s)	107, 431
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	2 cut(s)	414, 419
MboI	GATC	2 cut(s)	412, 417
MboII	GAAGA	3 cut(s)	16, 19, 94
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	1 cut(s)	417
MluCI	AATT	4 cut(s)	326, 386, 645, 682
MmeI	TCCRAC	1 cut(s)	17
MnlI	CCTC	6 cut(s)	33, 41, 45, 49, 60, 312
MseI	TTAA	4 cut(s)	161, 447, 545, 703
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	1 cut(s)	393
MunI	CAATTG	1 cut(s)	645
MwoI	GCNNNNNNNGC	1 cut(s)	647
NdeII	GATC	2 cut(s)	412, 417
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	2 cut(s)	148, 419
NmuCI	GTSAC	1 cut(s)	182
PfeI	GAWTC	3 cut(s)	60, 565, 658
PkrI	GCNGC	1 cut(s)	643
PspN4I	GGNNCC	2 cut(s)	148, 419
PsuI	RGATCY	1 cut(s)	417
RsaI	GTAC	2 cut(s)	148, 529
RsaNI	GTAC	2 cut(s)	147, 528
SaqAI	TTAA	4 cut(s)	161, 447, 545, 703
SatI	GCNGC	1 cut(s)	642
Sau3AI	GATC	2 cut(s)	412, 417
ScaI	AGTACT	1 cut(s)	529
SetI	ASST	7 cut(s)	44, 80, 152, 233, 323, 337, 447
SfaNI	GCATC	3 cut(s)	320, 469, 507
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	4 cut(s)	326, 386, 645, 682
SsiI	CCGC	1 cut(s)	503
SspMI	CTAG	2 cut(s)	107, 431
TaaI	ACNGT	3 cut(s)	35, 103, 360
TaqI	TCGA	3 cut(s)	63, 524, 630
TasI	AATT	4 cut(s)	326, 386, 645, 682
TatI	WGTACW	1 cut(s)	527
TfiI	GAWTC	3 cut(s)	60, 565, 658
Tru1I	TTAA	4 cut(s)	161, 447, 545, 703
Tru9I	TTAA	4 cut(s)	161, 447, 545, 703
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	17, 271, 468
TspGWI	ACGGA	1 cut(s)	653
Vha464I	CTTAAG	1 cut(s)	446
XapI	RAATTY	2 cut(s)	326, 386
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	2 cut(s)	107, 431
ZrmI	AGTACT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.