Rw2G028960

Golgi to plasma membrane transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001682
Physical Location & Seq
Forward (+)
46497023 .. 46500530
3508 bp
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UTR
Exon/CDS
Intron
Rw2G028960.1

Sequence Viewer

Length: 297 bp
ATGAGGTTGAAATTCTTAGCTTTACAGCGCAGGCGTGCAGAACAGTTCACGGTAGTGGTTAGAAACATACCATATGTCTCTGGTCGTTCAATATCAGACACTGTGGACCAATACTTCAAAAGAAACCACCCGAATGAGTATCTTTGTCACCAGGCAGTCTACAATGCAAACAAATTTGCCAGACTTGTGAGACAGCGAGATCGGATCCAAAACTGGCTAGACTATTACCAGCTTAAGTATGAAAGGCATCCAAACAAAAAACCAACCACAAAGGTTTCTGGGATTGAAGCAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

98

Amino Acids

11.86

Weight (kDa)

10.11

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHM7_cyt PF14703 15 - 93 6.6e-17 Cytosolic domain of 10TM putative phosphate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AclWI GGATC 2 cut(s) 199, 212
AcsI RAATTY 2 cut(s) 11, 173
AflII CTTAAG 1 cut(s) 233
AgsI TTSAA 4 cut(s) 10, 90, 118, 287
AjnI CCWGG 1 cut(s) 150
AleI CACNNNNGTG 1 cut(s) 53
AluBI AGCT 2 cut(s) 20, 232
AluI AGCT 2 cut(s) 20, 232
Alw26I GTCTC 2 cut(s) 82, 184
AlwI GGATC 2 cut(s) 199, 212
AlwNI CAGNNNCTG 1 cut(s) 101
ApoI RAATTY 2 cut(s) 11, 173
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 106
BamHI GGATCC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 82, 184
BfaI CTAG 1 cut(s) 218
BfrI CTTAAG 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 152
BseGI GGATG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 218
BsgI GTGCAG 1 cut(s) 57
BsmAI GTCTC 2 cut(s) 82, 184
Bsp143I GATC 2 cut(s) 199, 204
BspLI GGNNCC 1 cut(s) 206
BspPI GGATC 2 cut(s) 199, 212
BspTI CTTAAG 1 cut(s) 233
BsrI ACTGG 1 cut(s) 218
BssMI GATC 2 cut(s) 199, 204
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 3 cut(s) 45, 52, 103
BstAFI CTTAAG 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 32, 36
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 247
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 2 cut(s) 202, 207
BstMAI GTCTC 2 cut(s) 82, 184
BstMBI GATC 2 cut(s) 199, 204
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 32, 36
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 106
CviJI RGCY 3 cut(s) 20, 217, 232
CviKI_1 RGCY 3 cut(s) 20, 217, 232
DdeI CTNAG 1 cut(s) 16
DpnI GATC 2 cut(s) 201, 206
DpnII GATC 2 cut(s) 199, 204
Eco47I GGWCC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 150
FaiI YATR 4 cut(s) 68, 73, 75, 240
FauNDI CATATG 1 cut(s) 73
FblI GTMKAC 1 cut(s) 159
FokI GGATG 1 cut(s) 234
FspBI CTAG 1 cut(s) 218
GlaI GCGC 1 cut(s) 29
HhaI GCGC 1 cut(s) 30
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 3 cut(s) 48, 106, 160
Hpy188I TCNGA 2 cut(s) 97, 204
Hpy8I GTNNAC 3 cut(s) 48, 106, 160
HpyCH4III ACNGT 3 cut(s) 45, 52, 103
HpyCH4V TGCA 2 cut(s) 38, 167
HpyF3I CTNAG 1 cut(s) 16
HspAI GCGC 1 cut(s) 28
Kzo9I GATC 2 cut(s) 199, 204
LpnPI CCDG 8 cut(s) 16, 66, 137, 164, 193, 199, 242, 264
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 146
MalI GATC 2 cut(s) 201, 206
MboI GATC 2 cut(s) 199, 204
MflI RGATCY 1 cut(s) 204
MluCI AATT 2 cut(s) 11, 173
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 2 cut(s) 53, 132
MspCI CTTAAG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
NdeI CATATG 1 cut(s) 73
NdeII GATC 2 cut(s) 199, 204
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 146
OliI CACNNNNGTG 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 204
RseI CAYNNNNRTG 2 cut(s) 53, 132
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 2 cut(s) 199, 204
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 152
SetI ASST 4 cut(s) 8, 22, 234, 276
SfaNI GCATC 1 cut(s) 256
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 53, 132
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 2 cut(s) 11, 173
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 3 cut(s) 45, 52, 103
TasI AATT 2 cut(s) 11, 173
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 1 cut(s) 106
Vha464I CTTAAG 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 2 cut(s) 11, 173
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.