Rw4G015390

Golgi to plasma membrane transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001682
Physical Location & Seq
Reverse (-)
35316775 .. 35319866
3092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G015390.1

Sequence Viewer

Length: 1125 bp
ATGCTTTTCACTCTGGAGCGTTGCATATATAGTACAATATACTTGAAGATTTTTGTTCCAATGACAGTCCTAGCACTTCTTATTCTTATTCCAGTCAATGTATCGAGTGGTACCTTATTTTTCTTAAAGAAAGAGTTGGTTTTGAGTGACATTGATAGGCTCTCTATATCAAATGTGCGCCCCAAGTCAATAAGTTCACGATATTTTCGGGTAAATGGAGGTTCAAAAACATCATGGTTGTGCATACTTGTGAGACAGCGAGATCGGATCCAAAACTGGCTAGACTATTACCAGCTTAAGTATGAAAGGCATCCAAACAAAAAACCAACCACAAAGACAGGATGTTTGGGTCTTTGCGGTAAAAGGGTTCATGCCATCGAGTACTACAAGCAACAGATTAAGTCATTTGATAAAAGAATGGCACTGGAACAAGAAAAGATTCTCAAAGACTCCAAAGCTCTTTTGCCAGTTGCTTTTGTGTCATTTAGTTCACGTATTGTTACATGTCATATCCCATTGCACATTTTATCTTTTTCACTAGTATTGTTACATGGTTTTCTTCCTGGTCTTGCCCTTAAAATATTTTTGTACATTCTCCCGACCGTATTAATGATCATGTCAAAAATTGAGGGGCATATTGCATTATCAACCCTAGAACGGAGAACAGCAGCCAAATACTATTACTTTATGTTAGTCAACGTATTTTTGGGAAGCATAGTGACTGGAACAGCTTTTCAGCAACTGCATGCTTTCCTTCACCAATCACCTACTCAGATTCCGAGAAACATTGGAGAGACTATACCATCAAAGGCTACTTTCTTTATTACATATATAATGGTCGATGGGTGGGCTGCAATTGCTGGTGAGATTCTCCGTTTGAAGCCATTGGTTATATTTCATCTTAAGAACATGTTCTTGGTAAAAACTGAGAGAGATAGGGAGAAGGCAACAAACCCCGGTAGTGTGGATTTTCCAGACTCTCCCAAGTCTTCAACTATACTTCCTTCTGGGGATTGTGTATGCTGTGGTTACTCCGATCCTACTGCCTTTTATACTAGTCTTCTTTGCCTTTGCATACTTAGTCTACCGTCATCAGATAATCAATGTCTACAATCAACAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

374

Amino Acids

42.37

Weight (kDa)

9.45

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RSN1_TM PF13967 12 - 63 4.4e-06 Late exocytosis, associated with Golgi transport
PHM7_cyt PF14703 71 - 165 6e-20 Cytosolic domain of 10TM putative phosphate transporter
RSN1_7TM PF02714 155 - 324 7.7e-43 Calcium-dependent channel, 7TM region, putative phosphate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 110
AccI GTMKAC 2 cut(s) 1084, 1108
AciI CCGC 1 cut(s) 357
AclWI GGATC 3 cut(s) 262, 275, 1031
AfaI GTAC 4 cut(s) 34, 112, 383, 590
AfiI CCNNNNNNNGG 1 cut(s) 657
AflII CTTAAG 2 cut(s) 296, 902
AflIII ACRYGT 2 cut(s) 503, 909
AgsI TTSAA 4 cut(s) 46, 225, 880, 993
AhlI ACTAGT 2 cut(s) 538, 1055
AjnI CCWGG 1 cut(s) 562
AjuI GAANNNNNNNTTGG 2 cut(s) 899, 931
AluBI AGCT 3 cut(s) 295, 458, 731
AluI AGCT 3 cut(s) 295, 458, 731
Alw26I GTCTC 2 cut(s) 247, 788
AlwI GGATC 3 cut(s) 262, 275, 1031
AlwNI CAGNNNCTG 1 cut(s) 742
ApeKI GCWGC 2 cut(s) 668, 851
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
AseI ATTAAT 1 cut(s) 608
Asp700I GAANNNNTTC 2 cut(s) 438, 911
Asp718I GGTACC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 180
AsuC2I CCSGG 1 cut(s) 957
AsuHPI GGTGA 3 cut(s) 749, 756, 875
BamHI GGATCC 1 cut(s) 267
BanI GGYRCC 1 cut(s) 110
BbsI GAAGAC 2 cut(s) 981, 1052
BbvI GCAGC 2 cut(s) 680, 838
BccI CCATC 3 cut(s) 383, 811, 836
BcgI CGANNNNNNTGC 2 cut(s) 1025, 1059
BciT130I CCWGG 1 cut(s) 564
BclI TGATCA 1 cut(s) 612
BcnI CCSGG 1 cut(s) 957
BcoDI GTCTC 2 cut(s) 247, 788
BcuI ACTAGT 2 cut(s) 538, 1055
BfaI CTAG 5 cut(s) 71, 281, 539, 653, 1056
BfrI CTTAAG 2 cut(s) 296, 902
BisI GCNGC 2 cut(s) 669, 852
BlsI GCNGC 2 cut(s) 670, 853
BmcAI AGTACT 1 cut(s) 383
Bme1390I CCNGG 2 cut(s) 564, 957
BmiI GGNNCC 2 cut(s) 112, 269
BmrFI CCNGG 2 cut(s) 564, 957
BmsI GCATC 1 cut(s) 319
BpiI GAAGAC 2 cut(s) 981, 1052
BpmI CTGGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 957
BsaAI YACGTR 1 cut(s) 494
BsaJI CCNNGG 1 cut(s) 955
Bsc4I CCNNNNNNNGG 1 cut(s) 657
Bse1I ACTGG 5 cut(s) 92, 281, 429, 467, 727
Bse3DI GCAATG 1 cut(s) 515
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 1 cut(s) 955
BseGI GGATG 2 cut(s) 310, 347
BseLI CCNNNNNNNGG 1 cut(s) 657
BseMI GCAATG 1 cut(s) 515
BseMII CTCAG 2 cut(s) 785, 918
BseNI ACTGG 5 cut(s) 92, 281, 429, 467, 727
BseXI GCAGC 2 cut(s) 680, 838
Bsh1285I CGRYCG 1 cut(s) 603
BshNI GGYRCC 1 cut(s) 110
BsiEI CGRYCG 1 cut(s) 603
BsiSI CCGG 1 cut(s) 957
BslI CCNNNNNNNGG 1 cut(s) 657
BsmAI GTCTC 2 cut(s) 247, 788
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 4 cut(s) 262, 267, 612, 1036
BspACI CCGC 1 cut(s) 357
BspCNI CTCAG 2 cut(s) 784, 919
BspLI GGNNCC 2 cut(s) 112, 269
BspPI GGATC 3 cut(s) 262, 275, 1031
BspT107I GGYRCC 1 cut(s) 110
BspTI CTTAAG 2 cut(s) 296, 902
BsrDI GCAATG 1 cut(s) 515
BsrGI TGTACA 1 cut(s) 588
BsrI ACTGG 5 cut(s) 92, 281, 429, 467, 727
BssECI CCNNGG 1 cut(s) 955
BssMI GATC 4 cut(s) 262, 267, 612, 1036
Bst2UI CCWGG 1 cut(s) 564
Bst4CI ACNGT 3 cut(s) 67, 604, 1089
BstAFI CTTAAG 2 cut(s) 296, 902
BstAUI TGTACA 1 cut(s) 588
BstBAI YACGTR 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 747
BstDEI CTNAG 3 cut(s) 771, 927, 1079
BstF5I GGATG 2 cut(s) 310, 347
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 4 cut(s) 265, 270, 615, 1039
BstMAI GTCTC 2 cut(s) 247, 788
BstMBI GATC 4 cut(s) 262, 267, 612, 1036
BstMCI CGRYCG 1 cut(s) 603
BstMWI GCNNNNNNNGC 1 cut(s) 857
BstNI CCWGG 1 cut(s) 564
BstNSI RCATGY 3 cut(s) 507, 749, 913
BstSCI CCNGG 2 cut(s) 562, 955
BstV1I GCAGC 2 cut(s) 680, 838
BstV2I GAAGAC 2 cut(s) 981, 1052
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
BtsCI GGATG 2 cut(s) 310, 347
BtsIMutI CAGTG 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 747
CaiI CAGNNNCTG 1 cut(s) 742
CfoI GCGC 1 cut(s) 180
Csp6I GTAC 4 cut(s) 33, 111, 382, 589
CviAII CATG 7 cut(s) 234, 371, 504, 551, 616, 746, 910
CviJI RGCY 9 cut(s) 160, 280, 295, 458, 671, 731, 812, 851, 883
CviKI_1 RGCY 9 cut(s) 160, 280, 295, 458, 671, 731, 812, 851, 883
CviQI GTAC 4 cut(s) 33, 111, 382, 589
DdeI CTNAG 3 cut(s) 771, 927, 1079
DpnI GATC 4 cut(s) 264, 269, 614, 1038
DpnII GATC 4 cut(s) 262, 267, 612, 1036
EcoRII CCWGG 1 cut(s) 562
FaeI CATG 7 cut(s) 237, 374, 507, 554, 619, 749, 913
FatI CATG 7 cut(s) 233, 370, 503, 550, 615, 745, 909
FbaI TGATCA 1 cut(s) 612
FblI GTMKAC 2 cut(s) 1084, 1108
Fnu4HI GCNGC 2 cut(s) 669, 852
FokI GGATG 2 cut(s) 297, 354
Fsp4HI GCNGC 2 cut(s) 669, 852
FspBI CTAG 5 cut(s) 71, 281, 539, 653, 1056
GlaI GCGC 1 cut(s) 179
GluI GCNGC 2 cut(s) 669, 852
GsuI CTGGAG 1 cut(s) 35
HapII CCGG 1 cut(s) 957
HhaI GCGC 1 cut(s) 180
Hin1II CATG 7 cut(s) 237, 374, 507, 554, 619, 749, 913
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HinfI GANTC 5 cut(s) 439, 449, 775, 868, 977
HpaII CCGG 1 cut(s) 957
HphI GGTGA 3 cut(s) 749, 756, 875
Hpy166II GTNNAC 5 cut(s) 197, 491, 697, 1085, 1109
Hpy188I TCNGA 5 cut(s) 267, 774, 780, 1036, 1096
Hpy188III TCNNGA 4 cut(s) 14, 198, 598, 974
Hpy8I GTNNAC 5 cut(s) 197, 491, 697, 1085, 1109
HpyAV CCTTC 3 cut(s) 764, 937, 1014
HpyCH4III ACNGT 3 cut(s) 67, 604, 1089
HpyCH4IV ACGT 2 cut(s) 493, 699
HpyCH4V TGCA 7 cut(s) 24, 243, 520, 641, 745, 854, 1074
HpyF10VI GCNNNNNNNGC 1 cut(s) 857
HpyF3I CTNAG 3 cut(s) 771, 927, 1079
HpySE526I ACGT 2 cut(s) 493, 699
Hsp92II CATG 7 cut(s) 237, 374, 507, 554, 619, 749, 913
HspAI GCGC 1 cut(s) 178
KpnI GGTACC 1 cut(s) 114
Ksp22I TGATCA 1 cut(s) 612
Kzo9I GATC 4 cut(s) 262, 267, 612, 1036
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 2 cut(s) 680, 838
LweI GCATC 1 cut(s) 319
MaeI CTAG 5 cut(s) 71, 281, 539, 653, 1056
MaeII ACGT 2 cut(s) 493, 699
MaeIII GTNAC 5 cut(s) 146, 499, 546, 718, 1028
MalI GATC 4 cut(s) 264, 269, 614, 1038
MboI GATC 4 cut(s) 262, 267, 612, 1036
MboII GAAGA 4 cut(s) 58, 551, 981, 1052
MfeI CAATTG 1 cut(s) 855
MflI RGATCY 1 cut(s) 267
MluCI AATT 2 cut(s) 624, 855
MlyI GAGTC 2 cut(s) 443, 971
MnlI CCTC 2 cut(s) 212, 622
MroXI GAANNNNTTC 2 cut(s) 438, 911
MseI TTAA 6 cut(s) 125, 297, 399, 576, 608, 903
MslI CAYNNNNRTG 2 cut(s) 238, 248
MspCI CTTAAG 2 cut(s) 296, 902
MspI CCGG 1 cut(s) 957
MspR9I CCNGG 2 cut(s) 564, 957
MunI CAATTG 1 cut(s) 855
MvaI CCWGG 1 cut(s) 564
MwoI GCNNNNNNNGC 1 cut(s) 857
NciI CCSGG 1 cut(s) 957
NdeII GATC 4 cut(s) 262, 267, 612, 1036
NlaIII CATG 7 cut(s) 237, 374, 507, 554, 619, 749, 913
NlaIV GGNNCC 2 cut(s) 112, 269
NmuCI GTSAC 2 cut(s) 146, 718
NspI RCATGY 3 cut(s) 507, 749, 913
PaeI GCATGC 1 cut(s) 749
PciI ACATGT 2 cut(s) 503, 909
PdmI GAANNNNTTC 2 cut(s) 438, 911
PfeI GAWTC 3 cut(s) 439, 775, 868
PkrI GCNGC 2 cut(s) 670, 853
PleI GAGTC 2 cut(s) 443, 971
PpsI GAGTC 2 cut(s) 443, 971
Ppu21I YACGTR 1 cut(s) 494
PscI ACATGT 2 cut(s) 503, 909
PshBI ATTAAT 1 cut(s) 608
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 2 cut(s) 112, 269
PstNI CAGNNNCTG 1 cut(s) 742
PsuI RGATCY 1 cut(s) 267
RsaI GTAC 4 cut(s) 34, 112, 383, 590
RsaNI GTAC 4 cut(s) 33, 111, 382, 589
RseI CAYNNNNRTG 2 cut(s) 238, 248
SaqAI TTAA 6 cut(s) 125, 297, 399, 576, 608, 903
SatI GCNGC 2 cut(s) 669, 852
Sau3AI GATC 4 cut(s) 262, 267, 612, 1036
ScaI AGTACT 1 cut(s) 383
SchI GAGTC 2 cut(s) 443, 971
ScrFI CCNGG 2 cut(s) 564, 957
SetI ASST 8 cut(s) 116, 223, 297, 460, 496, 702, 733, 769
SfaNI GCATC 1 cut(s) 319
SmiMI CAYNNNNRTG 2 cut(s) 238, 248
SmlI CTYRAG 2 cut(s) 296, 902
SmoI CTYRAG 2 cut(s) 296, 902
SpeI ACTAGT 2 cut(s) 538, 1055
SphI GCATGC 1 cut(s) 749
Sse9I AATT 2 cut(s) 624, 855
SsiI CCGC 1 cut(s) 357
SspI AATATT 1 cut(s) 582
SspMI CTAG 5 cut(s) 71, 281, 539, 653, 1056
StyD4I CCNGG 2 cut(s) 562, 955
TaaI ACNGT 3 cut(s) 67, 604, 1089
TaiI ACGT 2 cut(s) 496, 702
TaqI TCGA 3 cut(s) 104, 378, 840
TasI AATT 2 cut(s) 624, 855
TatI WGTACW 3 cut(s) 32, 381, 588
TfiI GAWTC 3 cut(s) 439, 775, 868
Tru1I TTAA 6 cut(s) 125, 297, 399, 576, 608, 903
Tru9I TTAA 6 cut(s) 125, 297, 399, 576, 608, 903
TscAI CASTG 1 cut(s) 429
TseFI GTSAC 2 cut(s) 146, 718
TseI GCWGC 2 cut(s) 668, 851
Tsp45I GTSAC 2 cut(s) 146, 718
TspDTI ATGAA 3 cut(s) 318, 359, 887
TspGWI ACGGA 2 cut(s) 673, 863
TspRI CASTG 1 cut(s) 429
Vha464I CTTAAG 2 cut(s) 296, 902
VspI ATTAAT 1 cut(s) 608
XceI RCATGY 3 cut(s) 507, 749, 913
XmiI GTMKAC 2 cut(s) 1084, 1108
XmnI GAANNNNTTC 2 cut(s) 438, 911
XspI CTAG 5 cut(s) 71, 281, 539, 653, 1056
ZrmI AGTACT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.