Rroxscaffold_5G00343810

Golgi to plasma membrane transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001682
Physical Location & Seq
Reverse (-)
13481553 .. 13487380
5828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343810.1

Sequence Viewer

Length: 1317 bp
ATGACAGTCCTAGCACTTCTTATTCTTATTCCAGTCAATGTATCGAGTGGTACCTTATTTTTCTTAAAGAAAGAGTTGGTTTTGAGTGACATTGATAGGCTCTCTATATCAAATGTGCGCCCCAAGTCAATAAGGTTTTTTTACCACATAGGATTGGAATACTTGTTCACATTCTGGACTTGTTTCATGTTATACAAGGAGTATAACTATGTAGCATCAATGAGGTTGAAATTCTTAGCTTCACAGCGCAGGCGTGCAGAACAGTTCACGGTAGTGGTTAGAAACATACCATATGTCTCGGTCGTTCAATATCGGACACTTGTGGACCAATTCTTCAAAAGAAACCACCCGAATGAGTATCTTTGTCACCAGGCAGTCTACAATGCAAACAAATTTGCCGGACTTGTGAGACAGCGAGATCGGATCCAAAACTGGCTAGACTATTACCAGCTTAAGTATGAAAGGCATCCAAACAAAAAACCAACCACAAAGACAGGATGTTTGGGTCTTTGCGGTAAAAGGGTTGATGCCATCGAGTACTACAAGCAACCGATTAAGTCATTTGATAAAAGAATGGCACTGGAACAAGAAAAGATTCTCAAAGACTCCAAAGCTCTTTTGCCAGTTGCTTTTGTGAAATTCATCAAGTCATTTCTACGGGGTTTTCTTCCTGGTCTTGCCCTTAAAATATTTTTGTACATTCTCCCGACCGTATTAATGATCATGTCAAAAATTGAGGGGCATATTGCATTATCAACCCTAGAACGGAGAACAGCAGCCAAATACTATTACTTTATGTTAGTCAACGTATTTTTGGGAAGCATAGTGACTGGAACAGCTTTTCAGCAACTGCATGCTTTCCTTCACCAATCACCTACTCAGATTCCGAGAAACATTGGAGAGACTATACCATCAAAGGCTACTTTCTTTATTACATATATAATGGTCGATGGGTGGGCTGCAATTGCTGGTGAGATTCTCCGTTTGAAGCCATTGGTTATATTTCATCTTAAGAACATGTTCTTGGTAAAAGCGAGAGAGATAGGGAGAAGGCAACAAACCCCGGTAGTGTGGATTTTCCAGAGACCCTCCCAAGTCTTCAACTATACTTCCTTCGGGGATTGTCATGTCGACTCTAAACTGCAAAAAGTATTTGCAGATGGGTCTGCAAGTGAGGCCATGTCATATCTTCTACTAGCAGAGCAAGAATCAAGTAGTACCTCCGAAGGGTTGCTACCATTTGTTATCACCTCTTCTACCATTTCAAAATTTCAAAGTGATAAGAATCATCAACTGTTGTTTCCAATGAATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

438

Amino Acids

50.7

Weight (kDa)

9.78

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RSN1_TM PF13967 2 - 67 3.7e-11 Late exocytosis, associated with Golgi transport
PHM7_cyt PF14703 88 - 214 2.8e-29 Cytosolic domain of 10TM putative phosphate transporter
RSN1_7TM PF02714 212 - 354 5.1e-39 Calcium-dependent channel, 7TM region, putative phosphate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 50
AccI GTMKAC 2 cut(s) 378, 1131
AciI CCGC 1 cut(s) 513
AclWI GGATC 2 cut(s) 418, 431
AcsI RAATTY 4 cut(s) 230, 392, 638, 1268
AfaI GTAC 4 cut(s) 52, 539, 698, 1219
AfiI CCNNNNNNNGG 2 cut(s) 765, 1227
AflII CTTAAG 2 cut(s) 452, 1010
AflIII ACRYGT 1 cut(s) 1017
AgsI TTSAA 7 cut(s) 229, 308, 337, 988, 1102, 1266, 1274
AjnI CCWGG 2 cut(s) 369, 670
AjuI GAANNNNNNNTTGG 2 cut(s) 1007, 1039
AleI CACNNNNGTG 1 cut(s) 272
AloI GAACNNNNNNTCC 2 cut(s) 149, 181
AluBI AGCT 4 cut(s) 239, 451, 614, 839
AluI AGCT 4 cut(s) 239, 451, 614, 839
Alw26I GTCTC 4 cut(s) 301, 403, 896, 1078
AlwI GGATC 2 cut(s) 418, 431
AlwNI CAGNNNCTG 1 cut(s) 850
AoxI GGCC 1 cut(s) 1176
ApeKI GCWGC 2 cut(s) 776, 959
ApoI RAATTY 4 cut(s) 230, 392, 638, 1268
ArsI GACNNNNNNTTYG 2 cut(s) 484, 516
AseI ATTAAT 1 cut(s) 716
Asp700I GAANNNNTTC 2 cut(s) 594, 1019
Asp718I GGTACC 1 cut(s) 50
AspLEI GCGC 2 cut(s) 120, 249
AspS9I GGNCC 1 cut(s) 325
AsuC2I CCSGG 1 cut(s) 1064
AsuHPI GGTGA 5 cut(s) 359, 857, 864, 983, 1240
AvaII GGWCC 1 cut(s) 325
BamHI GGATCC 1 cut(s) 423
BanI GGYRCC 1 cut(s) 50
BarI GAAGNNNNNNTAC 2 cut(s) 1218, 1250
BbsI GAAGAC 1 cut(s) 1090
BbvI GCAGC 2 cut(s) 788, 946
BccI CCATC 4 cut(s) 539, 919, 944, 1154
BciT130I CCWGG 2 cut(s) 371, 672
BclI TGATCA 1 cut(s) 720
BcnI CCSGG 1 cut(s) 1064
BcoDI GTCTC 4 cut(s) 301, 403, 896, 1078
BfaI CTAG 4 cut(s) 11, 437, 761, 1196
BfrI CTTAAG 2 cut(s) 452, 1010
BisI GCNGC 2 cut(s) 777, 960
BlsI GCNGC 2 cut(s) 778, 961
BmcAI AGTACT 1 cut(s) 539
Bme1390I CCNGG 3 cut(s) 371, 672, 1064
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 2 cut(s) 52, 425
BmrFI CCNGG 3 cut(s) 371, 672, 1064
BmsI GCATC 3 cut(s) 224, 475, 517
BpiI GAAGAC 1 cut(s) 1090
BpuMI CCSGG 1 cut(s) 1064
BsaBI GATNNNNATC 1 cut(s) 1284
BsaI GGTCTC 1 cut(s) 1078
BsaJI CCNNGG 1 cut(s) 1062
Bsc4I CCNNNNNNNGG 2 cut(s) 765, 1227
Bse1I ACTGG 5 cut(s) 32, 437, 585, 623, 835
Bse8I GATNNNNATC 1 cut(s) 1284
BseBI CCWGG 2 cut(s) 371, 672
BseDI CCNNGG 1 cut(s) 1062
BseGI GGATG 2 cut(s) 466, 503
BseJI GATNNNNATC 1 cut(s) 1284
BseLI CCNNNNNNNGG 2 cut(s) 765, 1227
BseMII CTCAG 1 cut(s) 893
BseNI ACTGG 5 cut(s) 32, 437, 585, 623, 835
BseXI GCAGC 2 cut(s) 788, 946
BsgI GTGCAG 1 cut(s) 276
Bsh1285I CGRYCG 2 cut(s) 303, 711
BshFI GGCC 1 cut(s) 1178
BshNI GGYRCC 1 cut(s) 50
BsiEI CGRYCG 2 cut(s) 303, 711
BsiSI CCGG 2 cut(s) 399, 1064
BslI CCNNNNNNNGG 2 cut(s) 765, 1227
BsmAI GTCTC 4 cut(s) 301, 403, 896, 1078
BsnI GGCC 1 cut(s) 1178
Bso31I GGTCTC 1 cut(s) 1078
Bsp1407I TGTACA 1 cut(s) 696
Bsp143I GATC 3 cut(s) 418, 423, 720
BspACI CCGC 1 cut(s) 513
BspANI GGCC 1 cut(s) 1178
BspCNI CTCAG 1 cut(s) 892
BspLI GGNNCC 2 cut(s) 52, 425
BspPI GGATC 2 cut(s) 418, 431
BspT107I GGYRCC 1 cut(s) 50
BspTI CTTAAG 2 cut(s) 452, 1010
BspTNI GGTCTC 1 cut(s) 1078
BsrGI TGTACA 1 cut(s) 696
BsrI ACTGG 5 cut(s) 32, 437, 585, 623, 835
BssECI CCNNGG 1 cut(s) 1062
BssMI GATC 3 cut(s) 418, 423, 720
Bst2UI CCWGG 2 cut(s) 371, 672
Bst4CI ACNGT 5 cut(s) 7, 264, 271, 712, 1296
Bst6I CTCTTC 1 cut(s) 1258
BstAFI CTTAAG 2 cut(s) 452, 1010
BstAUI TGTACA 1 cut(s) 696
BstC8I GCNNGC 3 cut(s) 251, 255, 855
BstDEI CTNAG 2 cut(s) 235, 879
BstF5I GGATG 2 cut(s) 466, 503
BstHHI GCGC 2 cut(s) 120, 249
BstKTI GATC 3 cut(s) 421, 426, 723
BstMAI GTCTC 4 cut(s) 301, 403, 896, 1078
BstMBI GATC 3 cut(s) 418, 423, 720
BstMCI CGRYCG 2 cut(s) 303, 711
BstMWI GCNNNNNNNGC 2 cut(s) 965, 1175
BstNI CCWGG 2 cut(s) 371, 672
BstNSI RCATGY 2 cut(s) 857, 1021
BstSCI CCNGG 3 cut(s) 369, 670, 1062
BstV1I GCAGC 2 cut(s) 788, 946
BstV2I GAAGAC 1 cut(s) 1090
BstX2I RGATCY 1 cut(s) 423
BstYI RGATCY 1 cut(s) 423
BsuRI GGCC 1 cut(s) 1178
BtsCI GGATG 2 cut(s) 466, 503
BtsIMutI CAGTG 1 cut(s) 578
Cac8I GCNNGC 3 cut(s) 251, 255, 855
CaiI CAGNNNCTG 1 cut(s) 850
CfoI GCGC 2 cut(s) 120, 249
Cfr13I GGNCC 1 cut(s) 325
Csp6I GTAC 4 cut(s) 51, 538, 697, 1218
CviAII CATG 6 cut(s) 187, 724, 854, 1018, 1127, 1180
CviQI GTAC 4 cut(s) 51, 538, 697, 1218
DdeI CTNAG 2 cut(s) 235, 879
DpnI GATC 3 cut(s) 420, 425, 722
DpnII GATC 3 cut(s) 418, 423, 720
Eam1104I CTCTTC 1 cut(s) 1258
EarI CTCTTC 1 cut(s) 1258
Eco31I GGTCTC 1 cut(s) 1078
Eco47I GGWCC 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 369, 670
FaeI CATG 6 cut(s) 190, 727, 857, 1021, 1130, 1183
FatI CATG 6 cut(s) 186, 723, 853, 1017, 1126, 1179
FauNDI CATATG 1 cut(s) 292
FbaI TGATCA 1 cut(s) 720
FblI GTMKAC 2 cut(s) 378, 1131
Fnu4HI GCNGC 2 cut(s) 777, 960
FokI GGATG 2 cut(s) 453, 510
Fsp4HI GCNGC 2 cut(s) 777, 960
FspBI CTAG 4 cut(s) 11, 437, 761, 1196
GlaI GCGC 2 cut(s) 119, 248
GluI GCNGC 2 cut(s) 777, 960
HaeIII GGCC 1 cut(s) 1178
HapII CCGG 2 cut(s) 399, 1064
HhaI GCGC 2 cut(s) 120, 249
Hin1II CATG 6 cut(s) 190, 727, 857, 1021, 1130, 1183
Hin6I GCGC 2 cut(s) 118, 247
HinP1I GCGC 2 cut(s) 118, 247
HincII GTYRAC 2 cut(s) 805, 1132
HindII GTYRAC 2 cut(s) 805, 1132
HinfI GANTC 7 cut(s) 595, 605, 883, 976, 1133, 1208, 1285
HpaII CCGG 2 cut(s) 399, 1064
HphI GGTGA 5 cut(s) 359, 857, 864, 983, 1240
Hpy166II GTNNAC 6 cut(s) 168, 267, 325, 379, 805, 1132
Hpy188I TCNGA 5 cut(s) 315, 423, 882, 888, 1225
Hpy188III TCNNGA 3 cut(s) 175, 706, 1081
Hpy8I GTNNAC 6 cut(s) 168, 267, 325, 379, 805, 1132
HpyAV CCTTC 4 cut(s) 872, 1044, 1123, 1220
HpyCH4III ACNGT 5 cut(s) 7, 264, 271, 712, 1296
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 8 cut(s) 257, 386, 749, 853, 962, 1144, 1157, 1169
HpyF10VI GCNNNNNNNGC 2 cut(s) 965, 1175
HpyF3I CTNAG 2 cut(s) 235, 879
HpySE526I ACGT 1 cut(s) 807
Hsp92II CATG 6 cut(s) 190, 727, 857, 1021, 1130, 1183
HspAI GCGC 2 cut(s) 118, 247
KpnI GGTACC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 720
Kzo9I GATC 3 cut(s) 418, 423, 720
Lsp1109I GCAGC 2 cut(s) 788, 946
LweI GCATC 3 cut(s) 224, 475, 517
MaeI CTAG 4 cut(s) 11, 437, 761, 1196
MaeII ACGT 1 cut(s) 807
MaeIII GTNAC 3 cut(s) 86, 365, 826
MalI GATC 3 cut(s) 420, 425, 722
MboI GATC 3 cut(s) 418, 423, 720
MboII GAAGA 5 cut(s) 325, 659, 1090, 1181, 1245
MfeI CAATTG 1 cut(s) 963
MflI RGATCY 1 cut(s) 423
MluCI AATT 7 cut(s) 230, 329, 392, 638, 732, 963, 1268
MlyI GAGTC 2 cut(s) 599, 1127
MnlI CCTC 6 cut(s) 216, 730, 1099, 1168, 1231, 1261
MroXI GAANNNNTTC 2 cut(s) 594, 1019
MseI TTAA 6 cut(s) 65, 453, 555, 684, 716, 1011
MslI CAYNNNNRTG 2 cut(s) 272, 351
MspCI CTTAAG 2 cut(s) 452, 1010
MspI CCGG 2 cut(s) 399, 1064
MspR9I CCNGG 3 cut(s) 371, 672, 1064
MunI CAATTG 1 cut(s) 963
MvaI CCWGG 2 cut(s) 371, 672
MwoI GCNNNNNNNGC 2 cut(s) 965, 1175
NciI CCSGG 1 cut(s) 1064
NdeI CATATG 1 cut(s) 292
NdeII GATC 3 cut(s) 418, 423, 720
NlaIII CATG 6 cut(s) 190, 727, 857, 1021, 1130, 1183
NlaIV GGNNCC 2 cut(s) 52, 425
NmuCI GTSAC 3 cut(s) 86, 365, 826
NspI RCATGY 2 cut(s) 857, 1021
OliI CACNNNNGTG 1 cut(s) 272
PaeI GCATGC 1 cut(s) 857
PciI ACATGT 1 cut(s) 1017
PdmI GAANNNNTTC 2 cut(s) 594, 1019
PfeI GAWTC 5 cut(s) 595, 883, 976, 1208, 1285
PkrI GCNGC 2 cut(s) 778, 961
PleI GAGTC 2 cut(s) 599, 1127
PpsI GAGTC 2 cut(s) 599, 1127
PscI ACATGT 1 cut(s) 1017
PshBI ATTAAT 1 cut(s) 716
Psp6I CCWGG 2 cut(s) 369, 670
PspGI CCWGG 2 cut(s) 369, 670
PspN4I GGNNCC 2 cut(s) 52, 425
PspPI GGNCC 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 850
PsuI RGATCY 1 cut(s) 423
RsaI GTAC 4 cut(s) 52, 539, 698, 1219
RsaNI GTAC 4 cut(s) 51, 538, 697, 1218
RseI CAYNNNNRTG 2 cut(s) 272, 351
SalI GTCGAC 1 cut(s) 1130
SaqAI TTAA 6 cut(s) 65, 453, 555, 684, 716, 1011
SatI GCNGC 2 cut(s) 777, 960
Sau3AI GATC 3 cut(s) 418, 423, 720
Sau96I GGNCC 1 cut(s) 325
ScaI AGTACT 1 cut(s) 539
SchI GAGTC 2 cut(s) 599, 1127
ScrFI CCNGG 3 cut(s) 371, 672, 1064
SfaNI GCATC 3 cut(s) 224, 475, 517
SinI GGWCC 1 cut(s) 325
SmiMI CAYNNNNRTG 2 cut(s) 272, 351
SmlI CTYRAG 2 cut(s) 452, 1010
SmoI CTYRAG 2 cut(s) 452, 1010
SphI GCATGC 1 cut(s) 857
Sse9I AATT 7 cut(s) 230, 329, 392, 638, 732, 963, 1268
SsiI CCGC 1 cut(s) 513
SspI AATATT 1 cut(s) 690
SspMI CTAG 4 cut(s) 11, 437, 761, 1196
StyD4I CCNGG 3 cut(s) 369, 670, 1062
TaaI ACNGT 5 cut(s) 7, 264, 271, 712, 1296
TaiI ACGT 1 cut(s) 810
TaqI TCGA 4 cut(s) 44, 534, 948, 1131
TaqII GACCGA 1 cut(s) 289
TasI AATT 7 cut(s) 230, 329, 392, 638, 732, 963, 1268
TatI WGTACW 2 cut(s) 537, 696
TfiI GAWTC 5 cut(s) 595, 883, 976, 1208, 1285
Tru1I TTAA 6 cut(s) 65, 453, 555, 684, 716, 1011
Tru9I TTAA 6 cut(s) 65, 453, 555, 684, 716, 1011
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 3 cut(s) 86, 365, 826
TseI GCWGC 2 cut(s) 776, 959
Tsp45I GTSAC 3 cut(s) 86, 365, 826
TspDTI ATGAA 4 cut(s) 175, 474, 631, 995
TspGWI ACGGA 2 cut(s) 781, 971
TspRI CASTG 1 cut(s) 585
Vha464I CTTAAG 2 cut(s) 452, 1010
VpaK11BI GGWCC 1 cut(s) 325
VspI ATTAAT 1 cut(s) 716
XapI RAATTY 4 cut(s) 230, 392, 638, 1268
XceI RCATGY 2 cut(s) 857, 1021
XmiI GTMKAC 2 cut(s) 378, 1131
XmnI GAANNNNTTC 2 cut(s) 594, 1019
XspI CTAG 4 cut(s) 11, 437, 761, 1196
ZrmI AGTACT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.