Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001682

Physical Location & Seq

Genomic Coordinates Forward (+)

13577356 .. 13581191

Gene Structure 3836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGACAGTCCTAGCACTTCTTATTCTTATTCCAGTCAATGTATCGAGTGGTACCTTATTTTTCTTAAAGAAAGAGTTGGTTTTGAGTGACATTGATAGGCTCTCTATATCAAATGTGCGCCCCAAGTCAATAAGGGTAACTTATATTTATTCAGGCAGTCTACAATGCAAACAAATTTGCCGACTTGTGAGACAGCGAGATCGGATCCAAAACTGGCTAGACTATTACCAGCTTAAGTATGAAAGGCATCCAAACAAAAAACCAACCACAAAGATGGCACCGGAACAAGAAAAGATTCTCAAAGACTCCAAAGCTCTTTTGCCAGTTGCTTTTGTGATTCCGAGAAACATTGGAGAGACTATACCATCAAAGGCTACTTTCTTTATTACATATATAATGGTCGATGGGTGGGCTGCAATTGCTGGTGAGATTCTCCGTTTGAAGCCATTGATAATCAATGTCTACAATCAACAATATGAAAGTGCTGCTGCATTCGGCCACATGTTCATAGCCGCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

173

Amino Acids

19.76

Weight (kDa)

9.72

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RSN1_7TM	PF02714	113 - 157	6.8e-09	Calcium-dependent channel, 7TM region, putative phosphate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32090
fragaria_vesca	FvH4_3g01530 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560
malus_domestica	MD06G1023400.v1.1
prunus_persica	Prupe.3G145100_v2.0.a1 Prupe.5G024400_v2.0.a1 Prupe.5G024400_v2.0.a1
pyrus_communis	pycom03g21460 pycom06g01880
rosa_chinensis	RchiOBHm_Chr2g0130361 RchiOBHm_Chr7g0212871
rosa_laevigata	RLG00000002863 RLG00000036352
rosa_multiflora	Rmu_sc0000394.1_g000051 Rmu_sc0000394.1_g000052 Rmu_sc0017945.1_g000005
rosa_roxburghii	Rroxscaffold_2G00133450 Rroxscaffold_2G00135350 Rroxscaffold_3G00246490 Rroxscaffold_4G00293800 Rroxscaffold_4G00312360 Rroxscaffold_4G00322900 Rroxscaffold_5G00343810 Rroxscaffold_5G00343840 Rroxscaffold_5G00352480 Rroxscaffold_7G00204210
rosa_rugosa	Rorug07G0137200 Rorug07G0137300
rosa_samantha	Rh2BG351500 Rh4AG085800 Rh4CG093500 Rh4DG116200 Rh5AG424600 Rh7AG268800 Rh7BG264400 Rh7CG287800 Rh7DG276900 Rh7DG324500
rosa_wichuraiana	Rw2G028960 Rw4G010010 Rw4G015390 Rw5G037750 Rw7G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	50, 277
AccI	GTMKAC	2 cut(s)	160, 462
AciI	CCGC	1 cut(s)	513
AclWI	GGATC	2 cut(s)	199, 212
AcoI	YGGCCR	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	174
AfaI	GTAC	1 cut(s)	52
AflII	CTTAAG	1 cut(s)	233
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	1 cut(s)	442
AluBI	AGCT	2 cut(s)	232, 314
AluI	AGCT	2 cut(s)	232, 314
Alw26I	GTCTC	2 cut(s)	184, 350
AlwI	GGATC	2 cut(s)	199, 212
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	3 cut(s)	413, 485, 488
ApoI	RAATTY	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	294
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	437
BamHI	GGATCC	1 cut(s)	204
BanI	GGYRCC	2 cut(s)	50, 277
BbvI	GCAGC	3 cut(s)	400, 472, 475
BccI	CCATC	3 cut(s)	268, 373, 398
BcoDI	GTCTC	2 cut(s)	184, 350
BfaI	CTAG	2 cut(s)	11, 218
BfrI	CTTAAG	1 cut(s)	233
BisI	GCNGC	4 cut(s)	414, 486, 489, 513
BlsI	GCNGC	4 cut(s)	415, 487, 490, 514
BmiI	GGNNCC	3 cut(s)	52, 206, 279
BmsI	GCATC	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	280
Bse1I	ACTGG	3 cut(s)	32, 218, 323
BseGI	GGATG	1 cut(s)	247
BseNI	ACTGG	3 cut(s)	32, 218, 323
BseXI	GCAGC	3 cut(s)	400, 472, 475
BshFI	GGCC	1 cut(s)	498
BshNI	GGYRCC	2 cut(s)	50, 277
BsiSI	CCGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	184, 350
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	1 cut(s)	498
Bsp143I	GATC	2 cut(s)	199, 204
BspACI	CCGC	1 cut(s)	513
BspANI	GGCC	1 cut(s)	498
BspLI	GGNNCC	3 cut(s)	52, 206, 279
BspPI	GGATC	2 cut(s)	199, 212
BspT107I	GGYRCC	2 cut(s)	50, 277
BspTI	CTTAAG	1 cut(s)	233
BsrI	ACTGG	3 cut(s)	32, 218, 323
BssMI	GATC	2 cut(s)	199, 204
Bst4CI	ACNGT	1 cut(s)	7
BstAFI	CTTAAG	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	2 cut(s)	202, 207
BstMAI	GTCTC	2 cut(s)	184, 350
BstMBI	GATC	2 cut(s)	199, 204
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	505
BstV1I	GCAGC	3 cut(s)	400, 472, 475
BstX2I	RGATCY	1 cut(s)	204
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	498
BtsCI	GGATG	1 cut(s)	247
CfoI	GCGC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	1 cut(s)	502
CviJI	RGCY	9 cut(s)	100, 217, 232, 314, 374, 413, 445, 498, 512
CviKI_1	RGCY	9 cut(s)	100, 217, 232, 314, 374, 413, 445, 498, 512
CviQI	GTAC	1 cut(s)	51
DpnI	GATC	2 cut(s)	201, 206
DpnII	GATC	2 cut(s)	199, 204
EaeI	YGGCCR	1 cut(s)	496
FaeI	CATG	1 cut(s)	505
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FatI	CATG	1 cut(s)	501
FblI	GTMKAC	2 cut(s)	160, 462
Fnu4HI	GCNGC	4 cut(s)	414, 486, 489, 513
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	4 cut(s)	414, 486, 489, 513
FspBI	CTAG	2 cut(s)	11, 218
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	4 cut(s)	414, 486, 489, 513
HaeIII	GGCC	1 cut(s)	498
HapII	CCGG	1 cut(s)	281
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	505
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	4 cut(s)	295, 305, 337, 430
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	2 cut(s)	161, 463
Hpy188I	TCNGA	2 cut(s)	204, 342
Hpy8I	GTNNAC	2 cut(s)	161, 463
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	168, 416, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
Hsp92II	CATG	1 cut(s)	505
HspAI	GCGC	1 cut(s)	118
KpnI	GGTACC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	199, 204
LpnPI	CCDG	7 cut(s)	45, 138, 199, 242, 294, 336, 408
Lsp1109I	GCAGC	3 cut(s)	400, 472, 475
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	11, 218
MaeIII	GTNAC	2 cut(s)	86, 136
MalI	GATC	2 cut(s)	201, 206
MboI	GATC	2 cut(s)	199, 204
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	1 cut(s)	204
MluCI	AATT	2 cut(s)	174, 417
MlyI	GAGTC	1 cut(s)	299
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	2 cut(s)	65, 234
MslI	CAYNNNNRTG	1 cut(s)	272
MspCI	CTTAAG	1 cut(s)	233
MspI	CCGG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	491
MwoI	GCNNNNNNNGC	1 cut(s)	419
NdeII	GATC	2 cut(s)	199, 204
NlaIII	CATG	1 cut(s)	505
NlaIV	GGNNCC	3 cut(s)	52, 206, 279
NmuCI	GTSAC	1 cut(s)	86
NspI	RCATGY	1 cut(s)	505
PciI	ACATGT	1 cut(s)	501
PctI	GAATGC	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	3 cut(s)	295, 337, 430
PkrI	GCNGC	4 cut(s)	415, 487, 490, 514
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PscI	ACATGT	1 cut(s)	501
PspN4I	GGNNCC	3 cut(s)	52, 206, 279
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	65, 234
SatI	GCNGC	4 cut(s)	414, 486, 489, 513
Sau3AI	GATC	2 cut(s)	199, 204
SchI	GAGTC	1 cut(s)	299
SetI	ASST	3 cut(s)	56, 234, 316
SfaNI	GCATC	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	174, 417
SsiI	CCGC	1 cut(s)	513
SspMI	CTAG	2 cut(s)	11, 218
TaaI	ACNGT	1 cut(s)	7
TaqI	TCGA	2 cut(s)	44, 402
TasI	AATT	2 cut(s)	174, 417
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	3 cut(s)	295, 337, 430
Tru1I	TTAA	2 cut(s)	65, 234
Tru9I	TTAA	2 cut(s)	65, 234
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	3 cut(s)	413, 485, 488
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	3 cut(s)	255, 492, 496
TspGWI	ACGGA	1 cut(s)	425
Vha464I	CTTAAG	1 cut(s)	233
XapI	RAATTY	1 cut(s)	174
XceI	RCATGY	1 cut(s)	505
XmiI	GTMKAC	2 cut(s)	160, 462
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	2 cut(s)	11, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.