Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001682

Physical Location & Seq

Genomic Coordinates Reverse (-)

70762288 .. 70772060

Gene Structure 9773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00133450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCGATGAGCGTGAGAAGAGAGATGGAGAAGCCGAGCGTGGAGCGAGTTGAAGGCGGTGAAAGAGCAAACCGATCCGGAGGTCAATCTTCTCCAGACTCTCTCAACAACATCCGCACCGCCACCACCCGCCTCGAGCTCGCCTCCTCCCGACCCACCGGCAAAAAGATGCTCGTCCCTCTTACCGCCTCCCTTTACGTCCCCGAACTCTCCCGGGACCCCGACCAAGTCCTCGTCGACGTCGGCACCGGCTACTTCATCGAGAAGAACATGCCTCAAGCCAAAGACTACGCGACCGCAAGATCAATCTCCTCAAGTCCAATTTCGAACAACTCGTTGAGCTTGAAGATTTTTGTTCCAATGACAGTCCTAGCACTTCTTATTCTTATTCCAGTCAATGTATCGAGTGGTACCTTATTTTTCTTAAAGAAAGAGTTGGTTTTGAGTGACATTGATAGGCTCTCTATATCAAATGTGCGCCCCAAGTCAATAAGGTTTTTTTACCACATAGGATTGGAATACTTGTTCACATTCTGGACTTGTTTCATGTTATACAAGGAGTATAACTATGTAGCATCAATGAGGTTGAAATTCTTAGCTTCACAGCGCAGGCGTGCAGAACAGTTCACGGTAGTGGTTAGAAACATACCATATGTCTCTCGGTCGTTCAATATCGACACCGTGGACCAATTCTTCAAAAGAAACCACCCGAATGAGTATCTTTGTCACCAGACAGGATGTTTGGGTCTTTGCGGTAAAAGGGTTGATGCCATCGAGTACTACAAGCAACAGATTAAGTCATTTGATAAAAAAGAGATTCCGAGAAACATTGGAGAGACTATACCATCAAAGGCTACTTTCTTTATTACATATATAATGGTCGATGGGTGGGCTGCAATTGCTGGTGAGATTCTCCGTTTGAAGCCATTGGTTGCTTCTAAGAAGCAAAGCATATCCGATGAAGTCGGGTTAGTTTTGCAAGCAAACCGAAGCAGATGGCTCCTACAAGACAAGGTAGGAGACAAGGACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006892 GO:0006893 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0098876

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

344

Amino Acids

39.11

Weight (kDa)

9.57

Isoelectric Point (pI)

55.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	34 - 98	2.4e-12	Prefoldin subunit
RSN1_TM	PF13967	113 - 187	2.3e-14	Late exocytosis, associated with Golgi transport
RSN1_7TM	PF02714	262 - 313	3.7e-09	Calcium-dependent channel, 7TM region, putative phosphate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32090
fragaria_vesca	FvH4_3g01530 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560
malus_domestica	MD06G1023400.v1.1
prunus_persica	Prupe.3G145100_v2.0.a1 Prupe.5G024400_v2.0.a1 Prupe.5G024400_v2.0.a1
pyrus_communis	pycom03g21460 pycom06g01880
rosa_chinensis	RchiOBHm_Chr2g0130361 RchiOBHm_Chr7g0212871
rosa_laevigata	RLG00000002863 RLG00000036352
rosa_multiflora	Rmu_sc0000394.1_g000051 Rmu_sc0000394.1_g000052 Rmu_sc0017945.1_g000005
rosa_roxburghii	Rroxscaffold_2G00133450 Rroxscaffold_2G00135350 Rroxscaffold_3G00246490 Rroxscaffold_4G00293800 Rroxscaffold_4G00312360 Rroxscaffold_4G00322900 Rroxscaffold_5G00343810 Rroxscaffold_5G00343840 Rroxscaffold_5G00352480 Rroxscaffold_7G00204210
rosa_rugosa	Rorug07G0137200 Rorug07G0137300
rosa_samantha	Rh2BG351500 Rh4AG085800 Rh4CG093500 Rh4DG116200 Rh5AG424600 Rh7AG268800 Rh7BG264400 Rh7CG287800 Rh7DG276900 Rh7DG324500
rosa_wichuraiana	Rw2G028960 Rw4G010010 Rw4G015390 Rw5G037750 Rw7G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	243
Acc65I	GGTACC	1 cut(s)	410
AccB1I	GGYRCC	2 cut(s)	245, 410
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	293
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	7 cut(s)	57, 115, 120, 130, 186, 297, 753
AclWI	GGATC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	590
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	2 cut(s)	412, 779
AgsI	TTSAA	6 cut(s)	53, 346, 589, 670, 697, 922
AleI	CACNNNNGTG	1 cut(s)	632
AloI	GAACNNNNNNTCC	2 cut(s)	509, 541
AluBI	AGCT	3 cut(s)	139, 342, 599
AluI	AGCT	3 cut(s)	139, 342, 599
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	3 cut(s)	661, 830, 1014
AlwI	GGATC	1 cut(s)	69
Ama87I	CYCGRG	2 cut(s)	134, 213
Aor13HI	TCCGGA	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	893
ApoI	RAATTY	1 cut(s)	590
ArsI	GACNNNNNNTTYG	2 cut(s)	724, 756
Asp718I	GGTACC	1 cut(s)	410
AspLEI	GCGC	2 cut(s)	480, 609
AspS9I	GGNCC	2 cut(s)	217, 685
AsuC2I	CCSGG	2 cut(s)	214, 215
AsuHPI	GGTGA	3 cut(s)	71, 719, 917
AsuII	TTCGAA	1 cut(s)	326
AvaI	CYCGRG	2 cut(s)	134, 213
AvaII	GGWCC	2 cut(s)	217, 685
BanI	GGYRCC	2 cut(s)	245, 410
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	880
BccI	CCATC	5 cut(s)	19, 779, 853, 878, 990
BcnI	CCSGG	2 cut(s)	214, 215
BcoDI	GTCTC	3 cut(s)	661, 830, 1014
BfaI	CTAG	1 cut(s)	371
BisI	GCNGC	1 cut(s)	894
BlsI	GCNGC	1 cut(s)	895
BmcAI	AGTACT	1 cut(s)	779
Bme1390I	CCNGG	2 cut(s)	214, 215
Bme18I	GGWCC	2 cut(s)	217, 685
BmeT110I	CYCGRG	2 cut(s)	134, 213
BmgT120I	GGNCC	2 cut(s)	217, 685
BmiI	GGNNCC	5 cut(s)	218, 219, 247, 412, 1001
BmrFI	CCNGG	2 cut(s)	214, 215
BmsI	GCATC	3 cut(s)	159, 584, 757
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpmI	CTGGAG	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	326
BpuEI	CTTGAG	2 cut(s)	261, 298
BpuMI	CCSGG	2 cut(s)	214, 215
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	213, 681
BsaWI	WCCGGW	1 cut(s)	77
Bse118I	RCCGGY	2 cut(s)	158, 248
Bse1I	ACTGG	1 cut(s)	392
BseAI	TCCGGA	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	213, 681
BseGI	GGATG	2 cut(s)	111, 743
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	2 cut(s)	136, 301
BseXI	GCAGC	1 cut(s)	880
BsgI	GTGCAG	1 cut(s)	636
Bsh1236I	CGCG	1 cut(s)	293
Bsh1285I	CGRYCG	2 cut(s)	297, 665
BshNI	GGYRCC	2 cut(s)	245, 410
BsiEI	CGRYCG	2 cut(s)	297, 665
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	2 cut(s)	134, 213
BsiSI	CCGG	4 cut(s)	78, 159, 214, 249
BslFI	GGGAC	3 cut(s)	161, 185, 230
BsmAI	GTCTC	3 cut(s)	661, 830, 1014
BsmFI	GGGAC	3 cut(s)	161, 185, 230
BsoBI	CYCGRG	2 cut(s)	134, 213
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp13I	TCCGGA	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	74, 302
BspACI	CCGC	7 cut(s)	57, 115, 120, 130, 186, 297, 753
BspEI	TCCGGA	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	5 cut(s)	218, 219, 247, 412, 1001
BspPI	GGATC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	326
BspT107I	GGYRCC	2 cut(s)	245, 410
BsrFI	RCCGGY	2 cut(s)	158, 248
BsrI	ACTGG	1 cut(s)	392
BssAI	RCCGGY	2 cut(s)	158, 248
BssECI	CCNNGG	2 cut(s)	213, 681
BssMI	GATC	2 cut(s)	74, 302
BssNI	GRCGYC	1 cut(s)	240
Bst4CI	ACNGT	4 cut(s)	367, 624, 631, 682
Bst6I	CTCTTC	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	240
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	4 cut(s)	141, 611, 615, 981
BstDEI	CTNAG	2 cut(s)	595, 939
BstDSI	CCRYGG	1 cut(s)	681
BstF5I	GGATG	2 cut(s)	111, 743
BstFNI	CGCG	1 cut(s)	293
BstHHI	GCGC	2 cut(s)	480, 609
BstKTI	GATC	2 cut(s)	77, 305
BstMAI	GTCTC	3 cut(s)	661, 830, 1014
BstMBI	GATC	2 cut(s)	74, 302
BstMCI	CGRYCG	2 cut(s)	297, 665
BstMWI	GCNNNNNNNGC	1 cut(s)	899
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	2 cut(s)	212, 213
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	880
BtgI	CCRYGG	1 cut(s)	681
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	111, 743
Cac8I	GCNNGC	4 cut(s)	141, 611, 615, 981
CfoI	GCGC	2 cut(s)	480, 609
Cfr10I	RCCGGY	2 cut(s)	158, 248
Cfr13I	GGNCC	2 cut(s)	217, 685
Cfr9I	CCCGGG	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	411, 778
CviAII	CATG	2 cut(s)	271, 547
CviQI	GTAC	2 cut(s)	411, 778
DdeI	CTNAG	2 cut(s)	595, 939
DpnI	GATC	2 cut(s)	76, 304
DpnII	GATC	2 cut(s)	74, 302
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	217, 685
Eco53kI	GAGCTC	1 cut(s)	139
Eco88I	CYCGRG	2 cut(s)	134, 213
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	2 cut(s)	274, 550
FaqI	GGGAC	3 cut(s)	161, 185, 230
FatI	CATG	2 cut(s)	270, 546
FauI	CCCGC	1 cut(s)	137
FauNDI	CATATG	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	894
FokI	GGATG	2 cut(s)	98, 750
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	894
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	2 cut(s)	479, 608
GluI	GCNGC	1 cut(s)	894
GsuI	CTGGAG	1 cut(s)	78
HapII	CCGG	4 cut(s)	78, 159, 214, 249
HhaI	GCGC	2 cut(s)	480, 609
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	274, 550
Hin6I	GCGC	2 cut(s)	478, 607
HinP1I	GCGC	2 cut(s)	478, 607
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	3 cut(s)	98, 817, 910
HpaII	CCGG	4 cut(s)	78, 159, 214, 249
HphI	GGTGA	3 cut(s)	71, 719, 917
Hpy166II	GTNNAC	4 cut(s)	238, 528, 627, 685
Hpy188I	TCNGA	2 cut(s)	822, 958
Hpy188III	TCNNGA	5 cut(s)	78, 95, 150, 262, 535
Hpy8I	GTNNAC	4 cut(s)	238, 528, 627, 685
Hpy99I	CGWCG	3 cut(s)	239, 242, 245
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	4 cut(s)	367, 624, 631, 682
HpyCH4IV	ACGT	2 cut(s)	198, 240
HpyCH4V	TGCA	3 cut(s)	617, 896, 979
HpyF10VI	GCNNNNNNNGC	1 cut(s)	899
HpyF3I	CTNAG	2 cut(s)	595, 939
HpySE526I	ACGT	2 cut(s)	198, 240
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	274, 550
HspAI	GCGC	2 cut(s)	478, 607
KflI	GGGWCCC	1 cut(s)	217
Kpn2I	TCCGGA	1 cut(s)	77
KpnI	GGTACC	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	74, 302
LmnI	GCTCC	2 cut(s)	43, 1005
Lsp1109I	GCAGC	1 cut(s)	880
LweI	GCATC	3 cut(s)	159, 584, 757
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	2 cut(s)	198, 240
MaeIII	GTNAC	2 cut(s)	446, 725
MalI	GATC	2 cut(s)	76, 304
MboI	GATC	2 cut(s)	74, 302
MboII	GAAGA	5 cut(s)	30, 81, 277, 358, 685
MfeI	CAATTG	1 cut(s)	897
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	4 cut(s)	321, 590, 689, 897
MlyI	GAGTC	1 cut(s)	92
MroI	TCCGGA	1 cut(s)	77
MseI	TTAA	3 cut(s)	425, 795, 1033
MslI	CAYNNNNRTG	2 cut(s)	632, 711
MspI	CCGG	4 cut(s)	78, 159, 214, 249
MspR9I	CCNGG	2 cut(s)	214, 215
MunI	CAATTG	1 cut(s)	897
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	1 cut(s)	899
NciI	CCSGG	2 cut(s)	214, 215
NdeI	CATATG	1 cut(s)	652
NdeII	GATC	2 cut(s)	74, 302
NlaIII	CATG	2 cut(s)	274, 550
NlaIV	GGNNCC	5 cut(s)	218, 219, 247, 412, 1001
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	2 cut(s)	446, 725
NspI	RCATGY	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	326
OliI	CACNNNNGTG	1 cut(s)	632
PaeR7I	CTCGAG	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	332
PfeI	GAWTC	2 cut(s)	817, 910
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	895
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PpuMI	RGGWCCY	1 cut(s)	217
Psp124BI	GAGCTC	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	217
PspN4I	GGNNCC	5 cut(s)	218, 219, 247, 412, 1001
PspPI	GGNCC	2 cut(s)	217, 685
PspPPI	RGGWCCY	1 cut(s)	217
PspXI	VCTCGAGB	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	2 cut(s)	412, 779
RsaNI	GTAC	2 cut(s)	411, 778
RseI	CAYNNNNRTG	2 cut(s)	632, 711
SacI	GAGCTC	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	425, 795, 1033
SatI	GCNGC	1 cut(s)	894
Sau3AI	GATC	2 cut(s)	74, 302
Sau96I	GGNCC	2 cut(s)	217, 685
ScaI	AGTACT	1 cut(s)	779
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	214, 215
SduI	GDGCHC	1 cut(s)	141
SfaNI	GCATC	3 cut(s)	159, 584, 757
Sfr274I	CTCGAG	1 cut(s)	134
SfuI	TTCGAA	1 cut(s)	326
SgrDI	CGTCGACG	1 cut(s)	236
SinI	GGWCC	2 cut(s)	217, 685
SlaI	CTCGAG	1 cut(s)	134
SmaI	CCCGGG	1 cut(s)	215
SmiMI	CAYNNNNRTG	2 cut(s)	632, 711
SmlI	CTYRAG	3 cut(s)	134, 276, 313
SmoI	CTYRAG	3 cut(s)	134, 276, 313
Sse9I	AATT	4 cut(s)	321, 590, 689, 897
SsiI	CCGC	7 cut(s)	57, 115, 120, 130, 186, 297, 753
SspMI	CTAG	1 cut(s)	371
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	212, 213
TaaI	ACNGT	4 cut(s)	367, 624, 631, 682
TaiI	ACGT	2 cut(s)	201, 243
TaqI	TCGA	8 cut(s)	135, 237, 261, 326, 404, 675, 774, 882
TaqII	GACCGA	1 cut(s)	651
TasI	AATT	4 cut(s)	321, 590, 689, 897
TatI	WGTACW	1 cut(s)	777
TfiI	GAWTC	2 cut(s)	817, 910
Tru1I	TTAA	3 cut(s)	425, 795, 1033
Tru9I	TTAA	3 cut(s)	425, 795, 1033
TseFI	GTSAC	2 cut(s)	446, 725
TseI	GCWGC	1 cut(s)	893
Tsp45I	GTSAC	2 cut(s)	446, 725
TspDTI	ATGAA	3 cut(s)	247, 535, 975
TspGWI	ACGGA	1 cut(s)	905
TspMI	CCCGGG	1 cut(s)	213
Tth111I	GACNNNGTC	1 cut(s)	227
VpaK11BI	GGWCC	2 cut(s)	217, 685
XapI	RAATTY	1 cut(s)	590
XceI	RCATGY	1 cut(s)	274
XhoI	CTCGAG	1 cut(s)	134
XmaI	CCCGGG	1 cut(s)	213
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	1 cut(s)	371
ZraI	GACGTC	1 cut(s)	241
ZrmI	AGTACT	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.