Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001682

Physical Location & Seq

Genomic Coordinates Reverse (-)

79573620 .. 79574601

Gene Structure 982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036352

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGATTGATGGGTGGGCTGGTATCGCTGCAGAGATCTTGATGTTGAAGCCGCTCATTTTATATCACTTGAAGAATACCTTCCTGGTAAAGACTGATAAGGACAGGGAAGAGGCAATGGATCCAGGAAGTATTGGTTTCAACACTGGCGAGCCTCGTATACAGCTTTATATCTTACTGGGCCTTGTATATGCTACAGTGACTTCAGTTTTACTTCCATTCATAATTGTTTTCTTCGGCCTGGCTTATGTTGTGTTCCGTCATCAGATCATAAATGTTTACATCCAGCAATATGAAAGTGCTGCAGCATACTGGCCTGATGTCCATGGTCGCATTGTGTCTGCATTGATTATCTCTCAACTGCTTCTATTGGGATTGTTGCGTACCAAAAAAGCTGCTCAGTCTACACCATTTCTTCTTGCACTTCCAGTATTGACCGTAGCGTTCTATAAGTATTGCCAATGTCGTTTTGAACCTGCATTTGTTAGATATCCATTACAGGAAGCAAGGATGAAAGATACTCTGGAACAAGTAAGAGAACCAAACTTGAACTTGAAAGGCTACCTCCAAAGCGCATATGTCCATCCAGTTTTTAAAGAGTGCGATGAAGATGATGATGATGATGATGACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005227 GO:0005261 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008324 GO:0009628 GO:0009987 GO:0010959 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016043 GO:0022607 GO:0022803 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0032879 GO:0033554 GO:0034220 GO:0043269 GO:0043933 GO:0044085 GO:0044464 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051259 GO:0051262 GO:0051716 GO:0051924 GO:0055085 GO:0065003 GO:0065007 GO:0071214 GO:0071470 GO:0071474 GO:0071840 GO:0071944 GO:0090279 GO:0098655 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

211

Amino Acids

23.99

Weight (kDa)

5.34

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RSN1_7TM	PF02714	1 - 126	1.2e-33	Calcium-dependent channel, 7TM region, putative phosphate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32090
fragaria_vesca	FvH4_3g01530 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560 FvH4_5g23560
malus_domestica	MD06G1023400.v1.1
prunus_persica	Prupe.3G145100_v2.0.a1 Prupe.5G024400_v2.0.a1 Prupe.5G024400_v2.0.a1
pyrus_communis	pycom03g21460 pycom06g01880
rosa_chinensis	RchiOBHm_Chr2g0130361 RchiOBHm_Chr7g0212871
rosa_laevigata	RLG00000002863 RLG00000036352
rosa_multiflora	Rmu_sc0000394.1_g000051 Rmu_sc0000394.1_g000052 Rmu_sc0017945.1_g000005
rosa_roxburghii	Rroxscaffold_2G00133450 Rroxscaffold_2G00135350 Rroxscaffold_3G00246490 Rroxscaffold_4G00293800 Rroxscaffold_4G00312360 Rroxscaffold_4G00322900 Rroxscaffold_5G00343810 Rroxscaffold_5G00343840 Rroxscaffold_5G00352480 Rroxscaffold_7G00204210
rosa_rugosa	Rorug07G0137200 Rorug07G0137300
rosa_samantha	Rh2BG351500 Rh4AG085800 Rh4CG093500 Rh4DG116200 Rh5AG424600 Rh7AG268800 Rh7BG264400 Rh7CG287800 Rh7DG276900 Rh7DG324500
rosa_wichuraiana	Rw2G028960 Rw4G010010 Rw4G015390 Rw5G037750 Rw7G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	481
AccBSI	CCGCTC	1 cut(s)	52
AccI	GTMKAC	2 cut(s)	157, 401
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	2 cut(s)	113, 126
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	382
AgsI	TTSAA	6 cut(s)	46, 70, 139, 470, 547, 553
AjnI	CCWGG	3 cut(s)	81, 121, 237
AluBI	AGCT	2 cut(s)	163, 392
AluI	AGCT	2 cut(s)	163, 392
AlwI	GGATC	2 cut(s)	113, 126
AoxI	GGCC	3 cut(s)	178, 235, 311
ApeKI	GCWGC	4 cut(s)	26, 299, 302, 392
Asp700I	GAANNNNTTC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	572
AspS9I	GGNCC	1 cut(s)	178
BamHI	GGATCC	1 cut(s)	118
BbvI	GCAGC	4 cut(s)	13, 286, 314, 379
BccI	CCATC	2 cut(s)	2, 588
BciT130I	CCWGG	3 cut(s)	83, 123, 239
BfmI	CTRYAG	3 cut(s)	27, 192, 300
BfuAI	ACCTGC	1 cut(s)	481
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	5 cut(s)	27, 50, 300, 303, 393
BlsI	GCNGC	5 cut(s)	28, 51, 301, 304, 394
Bme1390I	CCNGG	3 cut(s)	83, 123, 239
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	3 cut(s)	83, 123, 239
BmrI	ACTGGG	1 cut(s)	185
BmuI	ACTGGG	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	322
Bse1I	ACTGG	5 cut(s)	148, 180, 314, 425, 584
Bse3DI	GCAATG	1 cut(s)	120
BseBI	CCWGG	3 cut(s)	83, 123, 239
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	3 cut(s)	279, 513, 580
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	5 cut(s)	148, 180, 314, 425, 584
BseXI	GCAGC	4 cut(s)	13, 286, 314, 379
BshFI	GGCC	3 cut(s)	180, 237, 313
BsnI	GGCC	3 cut(s)	180, 237, 313
Bsp143I	GATC	3 cut(s)	33, 118, 264
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	3 cut(s)	180, 237, 313
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	120
BspMAI	CTGCAG	2 cut(s)	31, 304
BspMI	ACCTGC	1 cut(s)	481
BspPI	GGATC	2 cut(s)	113, 126
BsrBI	CCGCTC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	5 cut(s)	148, 180, 314, 425, 584
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	3 cut(s)	33, 118, 264
BssNAI	GTATAC	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	322
Bst1107I	GTATAC	1 cut(s)	158
Bst2UI	CCWGG	3 cut(s)	83, 123, 239
Bst4CI	ACNGT	2 cut(s)	196, 436
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	396
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	3 cut(s)	279, 513, 580
BstHHI	GCGC	1 cut(s)	572
BstKTI	GATC	3 cut(s)	36, 121, 267
BstMBI	GATC	3 cut(s)	33, 118, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	3 cut(s)	83, 123, 239
BstSCI	CCNGG	3 cut(s)	81, 121, 237
BstSFI	CTRYAG	3 cut(s)	27, 192, 300
BstV1I	GCAGC	4 cut(s)	13, 286, 314, 379
BstX2I	RGATCY	2 cut(s)	33, 118
BstYI	RGATCY	2 cut(s)	33, 118
BstZ17I	GTATAC	1 cut(s)	158
BsuRI	GGCC	3 cut(s)	180, 237, 313
BtgI	CCRYGG	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	615
BtsCI	GGATG	3 cut(s)	279, 513, 580
BtsIMutI	CAGTG	2 cut(s)	141, 201
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	149
CfoI	GCGC	1 cut(s)	572
Cfr13I	GGNCC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	1 cut(s)	323
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	3 cut(s)	35, 120, 266
DpnII	GATC	3 cut(s)	33, 118, 264
DraI	TTTAAA	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	322
Eco32I	GATATC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	186
EcoRII	CCWGG	3 cut(s)	81, 121, 237
EcoRV	GATATC	1 cut(s)	488
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	1 cut(s)	326
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	1 cut(s)	322
FauNDI	CATATG	1 cut(s)	574
FblI	GTMKAC	2 cut(s)	157, 401
Fnu4HI	GCNGC	5 cut(s)	27, 50, 300, 303, 393
FokI	GGATG	3 cut(s)	266, 520, 567
Fsp4HI	GCNGC	5 cut(s)	27, 50, 300, 303, 393
GlaI	GCGC	1 cut(s)	571
GluI	GCNGC	5 cut(s)	27, 50, 300, 303, 393
HaeIII	GGCC	3 cut(s)	180, 237, 313
HhaI	GCGC	1 cut(s)	572
Hin1II	CATG	1 cut(s)	326
Hin6I	GCGC	1 cut(s)	570
HinP1I	GCGC	1 cut(s)	570
Hpy166II	GTNNAC	3 cut(s)	158, 277, 402
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	2 cut(s)	37, 521
Hpy8I	GTNNAC	3 cut(s)	158, 277, 402
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	2 cut(s)	196, 436
HpyCH4V	TGCA	5 cut(s)	29, 302, 341, 419, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	396
Hsp92II	CATG	1 cut(s)	326
HspAI	GCGC	1 cut(s)	570
Kzo9I	GATC	3 cut(s)	33, 118, 264
Lsp1109I	GCAGC	4 cut(s)	13, 286, 314, 379
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	3 cut(s)	35, 120, 266
MbiI	CCGCTC	1 cut(s)	52
MboI	GATC	3 cut(s)	33, 118, 264
MboII	GAAGA	5 cut(s)	82, 119, 223, 404, 617
MflI	RGATCY	2 cut(s)	33, 118
MluCI	AATT	1 cut(s)	222
MnlI	CCTC	3 cut(s)	103, 162, 572
MroXI	GAANNNNTTC	1 cut(s)	77
MseI	TTAA	2 cut(s)	591, 631
MspR9I	CCNGG	3 cut(s)	83, 123, 239
MvaI	CCWGG	3 cut(s)	83, 123, 239
MwoI	GCNNNNNNNGC	1 cut(s)	23
NcoI	CCATGG	1 cut(s)	322
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	3 cut(s)	33, 118, 264
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	5 cut(s)	28, 51, 301, 304, 394
Psp6I	CCWGG	3 cut(s)	81, 121, 237
PspGI	CCWGG	3 cut(s)	81, 121, 237
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	178
PstI	CTGCAG	2 cut(s)	31, 304
PsuI	RGATCY	2 cut(s)	33, 118
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	591, 631
SatI	GCNGC	5 cut(s)	27, 50, 300, 303, 393
Sau3AI	GATC	3 cut(s)	33, 118, 264
Sau96I	GGNCC	1 cut(s)	178
ScrFI	CCNGG	3 cut(s)	83, 123, 239
SetI	ASST	5 cut(s)	80, 165, 394, 475, 564
SfcI	CTRYAG	3 cut(s)	27, 192, 300
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	1 cut(s)	50
StyD4I	CCNGG	3 cut(s)	81, 121, 237
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	2 cut(s)	196, 436
TasI	AATT	1 cut(s)	222
TauI	GCSGC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	591, 631
Tru9I	TTAA	2 cut(s)	591, 631
TscAI	CASTG	2 cut(s)	148, 201
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	4 cut(s)	26, 299, 302, 392
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	4 cut(s)	208, 306, 524, 618
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	2 cut(s)	148, 201
XmiI	GTMKAC	2 cut(s)	157, 401
XmnI	GAANNNNTTC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.