Prupe.8G112300_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000481
Physical Location & Seq
Forward (+)
14113637 .. 14114450
814 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G112300.1

Sequence Viewer

Length: 507 bp
AACCCCAACGATGAAGCAGATCCCAACGACCCTGAATTCGCAATTCCCATCGTCGAAATGTCTCTTCTCACCTCAGGATCTCTAGATCAACGGTCAAAAATCATCCATGACCTTGTCAAAATTTGTCAAGAATGGGACTTCTTCTTAGAGCAGAATGAGTTCAAATCGGGGAACGATGTGCTGGAGATGTTCAAGTACGGAACTAGCTATAATCTGGCATTGGATAAATTCCTTCTCTGGAGGGACTTCTTCAAGGTCAGAGTGCATCCCGAATTCTACTCCCTCTACAAGCCGGCTTGCTTCAGGGAGGTCTCAATGGAGTTCAGCAAGAGAGCCCGAGAAGTTGCGTTGGAGATAACAAGAGCAATCTCAGAAAGCTTGGGGTTGGGGCCAAACTACATACACAACGCCATGAACATGGATCGTGGCATACAAATGCTCGCCGCCAACTACTACCCTCCTTGCCCTCAGCCAGAACATGCAATTGGTATACCCCCATCACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

169

Amino Acids

19.38

Weight (kDa)

5.08

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000481)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20420 FvH4_5g20421 FvH4_5g20430 FvH4_5g20431 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g33280
malus_domestica MD03G1140300.v1.1 MD03G1140400.v1.1 MD11G1171500.v1.1
prunus_persica Prupe.8G112300_v2.0.a1
pyrus_communis pycom03g09520 pycom11g13270
rosa_chinensis RchiOBHm_Chr2g0142431 RchiOBHm_Chr5g0068661 RchiOBHm_Chr6g0271401 RchiOBHm_Chr7g0205561 RchiOBHm_Chr7g0205581 RchiOBHm_Chr7g0205721 RchiOBHm_Chr7g0205741
rosa_laevigata RLG00000003357 RLG00000003358 RLG00000003359 RLG00000003363 RLG00000009087 RLG00000019958 RLG00000035989
rosa_multiflora Rmu_sc0000076.1_g000053 Rmu_sc0000076.1_g000054 Rmu_sc0000076.1_g000055 Rmu_sc0001211.1_g000022 Rmu_sc0001679.1_g000017 Rmu_sc0008518.1_g000018 Rmu_sc0008518.1_g000022 Rmu_sc0008518.1_g000024 Rmu_ssc0000482.1_g000004
rosa_roxburghii Rroxscaffold_1G00012230 Rroxscaffold_2G00102620 Rroxscaffold_3G00252010 Rroxscaffold_3G00252020 Rroxscaffold_3G00252030 Rroxscaffold_3G00252050 Rroxscaffold_7G00197030
rosa_rugosa Rorug02G0372500 Rorug02G0372600 Rorug06G0060800 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092700 Rorug07G0092800
rosa_samantha Rh2AG424300 Rh2BG433900 Rh2CG410900 Rh2DG443900 Rh5AG449900 Rh5DG481500 Rh5DG481700 Rh6AG180000 Rh6BG183200 Rh6CG179900 Rh6DG171700 Rh7AG222800 Rh7AG223900 Rh7AG224200 Rh7AG224300 Rh7BG219100 Rh7BG219200 Rh7BG219300 Rh7BG219500 Rh7CG235600 Rh7CG237400 Rh7CG237700 Rh7CG237800 Rh7DG229400 Rh7DG229600 Rh7DG231000
rosa_wichuraiana Rw2G034750 Rw5G042000 Rw6G015460 Rw7G019220 Rw7G019310 Rw7G019320 Rw7G019330 Rw7G019340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 490
AciI CCGC 1 cut(s) 444
AclWI GGATC 3 cut(s) 14, 85, 429
AcsI RAATTY 4 cut(s) 35, 120, 227, 272
AcuI CTGAAG 1 cut(s) 286
AfaI GTAC 1 cut(s) 197
AgsI TTSAA 3 cut(s) 163, 193, 253
AjuI GAANNNNNNNTTGG 2 cut(s) 468, 500
AluBI AGCT 2 cut(s) 207, 378
AluI AGCT 2 cut(s) 207, 378
Alw26I GTCTC 2 cut(s) 66, 316
AlwI GGATC 3 cut(s) 14, 85, 429
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 1 cut(s) 389
ApoI RAATTY 4 cut(s) 35, 120, 227, 272
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
Asp700I GAANNNNTTC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 389
AsuHPI GGTGA 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 336
AxyI CCTNAGG 1 cut(s) 73
BanII GRGCYC 1 cut(s) 337
BbvCI CCTCAGC 1 cut(s) 468
BccI CCATC 2 cut(s) 56, 505
BcoDI GTCTC 2 cut(s) 66, 316
BfaI CTAG 2 cut(s) 83, 204
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
BmeT110I CYCGRG 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 390
BmsI GCATC 1 cut(s) 274
BpmI CTGGAG 2 cut(s) 203, 259
Bpu10I CCTNAGC 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 316
Bse118I RCCGGY 1 cut(s) 292
Bse21I CCTNAGG 1 cut(s) 73
BseGI GGATG 2 cut(s) 102, 265
BseMII CTCAG 3 cut(s) 87, 384, 482
BshFI GGCC 1 cut(s) 391
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 2 cut(s) 149, 257
BsmAI GTCTC 2 cut(s) 66, 316
BsmFI GGGAC 2 cut(s) 149, 257
BsnI GGCC 1 cut(s) 391
Bso31I GGTCTC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 4 cut(s) 19, 77, 85, 421
BspACI CCGC 1 cut(s) 444
BspANI GGCC 1 cut(s) 391
BspCNI CTCAG 3 cut(s) 86, 383, 481
BspLI GGNNCC 1 cut(s) 390
BspPI GGATC 3 cut(s) 14, 85, 429
BspTNI GGTCTC 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 292
BssMI GATC 4 cut(s) 19, 77, 85, 421
BssNAI GTATAC 1 cut(s) 491
Bst1107I GTATAC 1 cut(s) 491
Bst4CI ACNGT 1 cut(s) 93
Bst6I CTCTTC 1 cut(s) 69
BstC8I GCNNGC 3 cut(s) 294, 298, 441
BstDEI CTNAG 4 cut(s) 73, 145, 370, 468
BstF5I GGATG 2 cut(s) 102, 265
BstKTI GATC 4 cut(s) 22, 80, 88, 424
BstMAI GTCTC 2 cut(s) 66, 316
BstMBI GATC 4 cut(s) 19, 77, 85, 421
BstNSI RCATGY 1 cut(s) 482
BstX2I RGATCY 2 cut(s) 19, 77
BstXI CCANNNNNNTGG 1 cut(s) 418
BstYI RGATCY 2 cut(s) 19, 77
BstZ17I GTATAC 1 cut(s) 491
Bsu36I CCTNAGG 1 cut(s) 73
BsuRI GGCC 1 cut(s) 391
BtsCI GGATG 2 cut(s) 102, 265
BtsIMutI CAGTG 1 cut(s) 502
Cac8I GCNNGC 3 cut(s) 294, 298, 441
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 196
CviAII CATG 4 cut(s) 107, 412, 418, 479
CviJI RGCY 7 cut(s) 207, 292, 296, 335, 378, 391, 472
CviKI_1 RGCY 7 cut(s) 207, 292, 296, 335, 378, 391, 472
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 4 cut(s) 73, 145, 370, 468
DpnI GATC 4 cut(s) 21, 79, 87, 423
DpnII GATC 4 cut(s) 19, 77, 85, 421
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 286
Eco81I CCTNAGG 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 336
EcoRI GAATTC 2 cut(s) 35, 272
EcoT38I GRGCYC 1 cut(s) 337
FaeI CATG 4 cut(s) 110, 415, 421, 482
FaiI YATR 8 cut(s) 108, 210, 401, 413, 419, 431, 480, 491
FaqI GGGAC 2 cut(s) 149, 257
FatI CATG 4 cut(s) 106, 411, 417, 478
FblI GTMKAC 1 cut(s) 490
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 2 cut(s) 89, 252
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 2 cut(s) 83, 204
GluI GCNGC 1 cut(s) 444
GsuI CTGGAG 2 cut(s) 203, 259
HaeIII GGCC 1 cut(s) 391
HapII CCGG 1 cut(s) 293
Hin1II CATG 4 cut(s) 110, 415, 421, 482
HindIII AAGCTT 1 cut(s) 376
HpaII CCGG 1 cut(s) 293
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 2 cut(s) 260, 373
Hpy188III TCNNGA 5 cut(s) 75, 83, 128, 238, 269
Hpy8I GTNNAC 1 cut(s) 491
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 265, 482
HpyF3I CTNAG 4 cut(s) 73, 145, 370, 468
Hsp92II CATG 4 cut(s) 110, 415, 421, 482
KroI GCCGGC 1 cut(s) 292
KroNI GCCGGC 1 cut(s) 294
Kzo9I GATC 4 cut(s) 19, 77, 85, 421
LpnPI CCDG 8 cut(s) 45, 60, 167, 200, 223, 289, 306, 486
LweI GCATC 1 cut(s) 274
MaeI CTAG 2 cut(s) 83, 204
MalI GATC 4 cut(s) 21, 79, 87, 423
MboI GATC 4 cut(s) 19, 77, 85, 421
MboII GAAGA 3 cut(s) 56, 133, 241
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 2 cut(s) 19, 77
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 6 cut(s) 35, 42, 120, 227, 272, 483
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 6 cut(s) 82, 234, 293, 301, 468, 477
MroNI GCCGGC 1 cut(s) 292
MroXI GAANNNNTTC 1 cut(s) 158
MslI CAYNNNNRTG 2 cut(s) 416, 434
MspI CCGG 1 cut(s) 293
MunI CAATTG 1 cut(s) 483
NaeI GCCGGC 1 cut(s) 294
NdeII GATC 4 cut(s) 19, 77, 85, 421
NgoMIV GCCGGC 1 cut(s) 292
NlaIII CATG 4 cut(s) 110, 415, 421, 482
NlaIV GGNNCC 1 cut(s) 390
NspI RCATGY 1 cut(s) 482
PdiI GCCGGC 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 390
PspPI GGNCC 1 cut(s) 389
PsuI RGATCY 2 cut(s) 19, 77
PsyI GACNNNGTC 1 cut(s) 113
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 2 cut(s) 416, 434
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 4 cut(s) 19, 77, 85, 421
Sau96I GGNCC 1 cut(s) 389
SduI GDGCHC 1 cut(s) 337
SetI ASST 6 cut(s) 74, 114, 209, 258, 312, 380
SfaNI GCATC 1 cut(s) 274
SmiMI CAYNNNNRTG 2 cut(s) 416, 434
Sse9I AATT 6 cut(s) 35, 42, 120, 227, 272, 483
SsiI CCGC 1 cut(s) 444
SspMI CTAG 2 cut(s) 83, 204
TaaI ACNGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 54
TasI AATT 6 cut(s) 35, 42, 120, 227, 272, 483
TauI GCSGC 1 cut(s) 446
TspDTI ATGAA 2 cut(s) 27, 428
TspGWI ACGGA 1 cut(s) 213
Tth111I GACNNNGTC 1 cut(s) 113
XapI RAATTY 4 cut(s) 35, 120, 227, 272
XbaI TCTAGA 1 cut(s) 82
XceI RCATGY 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 490
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 2 cut(s) 83, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.