Rmu_sc0000076.1_g000055

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000076.1
OG0000481
Physical Location & Seq
Forward (+)
259980 .. 260757
778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000076.1_g000055.1.cds

Sequence Viewer

Length: 531 bp
atgtccctgatcgagtttgctgttcccattgttgatatgtctcttctcatctctggttctcctgatcagcgcgctcaaatcatctgcaatcttgtcaaaatttgtcaagaatggggcttcttcattgcaattaaccacggagtaccagagagcctgacgaaggggatgactgacgcatgtcatggatttttcagtcttccagaagaggagaagaaggagtttaaatcaggaaatgatgttcttgagatgttcaagtatggaacaagctataatctagcactggacaaagtacttttatggagggacttcttcaaggtccgaacacacccggagtttcactccctctacaaaccagctagcttcagtgaggtttcactggagtttagcaaaagaagccgagaagtagccttggaaataacaagagcaatatcggaaagcttgggtttggggccggactacatatacaacacaatgaacatggatcgcggcttacaaatgctagcggggaactactacccaccttgtccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

176

Amino Acids

20.0

Weight (kDa)

5.38

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000481)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20420 FvH4_5g20421 FvH4_5g20430 FvH4_5g20431 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g33280
malus_domestica MD03G1140300.v1.1 MD03G1140400.v1.1 MD11G1171500.v1.1
prunus_persica Prupe.8G112300_v2.0.a1
pyrus_communis pycom03g09520 pycom11g13270
rosa_chinensis RchiOBHm_Chr2g0142431 RchiOBHm_Chr5g0068661 RchiOBHm_Chr6g0271401 RchiOBHm_Chr7g0205561 RchiOBHm_Chr7g0205581 RchiOBHm_Chr7g0205721 RchiOBHm_Chr7g0205741
rosa_laevigata RLG00000003357 RLG00000003358 RLG00000003359 RLG00000003363 RLG00000009087 RLG00000019958 RLG00000035989
rosa_multiflora Rmu_sc0000076.1_g000053 Rmu_sc0000076.1_g000054 Rmu_sc0000076.1_g000055 Rmu_sc0001211.1_g000022 Rmu_sc0001679.1_g000017 Rmu_sc0008518.1_g000018 Rmu_sc0008518.1_g000022 Rmu_sc0008518.1_g000024 Rmu_ssc0000482.1_g000004
rosa_roxburghii Rroxscaffold_1G00012230 Rroxscaffold_2G00102620 Rroxscaffold_3G00252010 Rroxscaffold_3G00252020 Rroxscaffold_3G00252030 Rroxscaffold_3G00252050 Rroxscaffold_7G00197030
rosa_rugosa Rorug02G0372500 Rorug02G0372600 Rorug06G0060800 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092700 Rorug07G0092800
rosa_samantha Rh2AG424300 Rh2BG433900 Rh2CG410900 Rh2DG443900 Rh5AG449900 Rh5DG481500 Rh5DG481700 Rh6AG180000 Rh6BG183200 Rh6CG179900 Rh6DG171700 Rh7AG222800 Rh7AG223900 Rh7AG224200 Rh7AG224300 Rh7BG219100 Rh7BG219200 Rh7BG219300 Rh7BG219500 Rh7CG235600 Rh7CG237400 Rh7CG237700 Rh7CG237800 Rh7DG229400 Rh7DG229600 Rh7DG231000
rosa_wichuraiana Rw2G034750 Rw5G042000 Rw6G015460 Rw7G019220 Rw7G019310 Rw7G019320 Rw7G019330 Rw7G019340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 72, 486
AciI CCGC 2 cut(s) 486, 503
AclWI GGATC 1 cut(s) 489
AcsI RAATTY 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 346
AfaI GTAC 2 cut(s) 144, 291
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 2 cut(s) 253, 313
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 4 cut(s) 267, 356, 360, 438
AluI AGCT 4 cut(s) 267, 356, 360, 438
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 489
AoxI GGCC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 99
AspLEI GCGC 2 cut(s) 72, 74
AspS9I GGNCC 2 cut(s) 316, 449
AsuC2I CCSGG 1 cut(s) 329
AsuNHI GCTAGC 2 cut(s) 356, 499
AvaII GGWCC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 188
BclI TGATCA 1 cut(s) 64
BcnI CCSGG 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 3 cut(s) 275, 357, 500
BisI GCNGC 1 cut(s) 487
BlsI GCNGC 1 cut(s) 488
BmcAI AGTACT 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 329
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 2 cut(s) 316, 449
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 1 cut(s) 329
BmtI GCTAGC 2 cut(s) 360, 503
BoxI GACNNNNGTC 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BpmI CTGGAG 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 329
BsaJI CCNNGG 2 cut(s) 136, 408
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 2 cut(s) 285, 381
Bse3DI GCAATG 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 136, 408
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 123
BseNI ACTGG 2 cut(s) 285, 381
BsePI GCGCGC 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 221
Bsh1236I CGCG 2 cut(s) 72, 486
BshFI GGCC 1 cut(s) 451
BsiSI CCGG 2 cut(s) 329, 452
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 1 cut(s) 451
Bsp143I GATC 3 cut(s) 9, 64, 481
BspACI CCGC 2 cut(s) 486, 503
BspANI GGCC 1 cut(s) 451
BspFNI CGCG 2 cut(s) 72, 486
BspLI GGNNCC 1 cut(s) 450
BspOI GCTAGC 2 cut(s) 360, 503
BspPI GGATC 1 cut(s) 489
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 2 cut(s) 285, 381
BssECI CCNNGG 2 cut(s) 136, 408
BssHII GCGCGC 1 cut(s) 70
BssMI GATC 3 cut(s) 9, 64, 481
BssT1I CCWWGG 1 cut(s) 408
Bst6I CTCTTC 2 cut(s) 48, 198
BstC8I GCNNGC 3 cut(s) 72, 358, 501
BstDEI CTNAG 1 cut(s) 528
BstDSI CCRYGG 1 cut(s) 136
BstENI CCTNNNNNAGG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 171
BstFNI CGCG 2 cut(s) 72, 486
BstHHI GCGC 2 cut(s) 72, 74
BstKTI GATC 3 cut(s) 12, 67, 484
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 3 cut(s) 9, 64, 481
BstMWI GCNNNNNNNGC 1 cut(s) 393
BstNSI RCATGY 1 cut(s) 180
BstPAI GACNNNNGTC 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 327
BstUI CGCG 2 cut(s) 72, 486
BstV2I GAAGAC 1 cut(s) 188
BsuRI GGCC 1 cut(s) 451
BtgI CCRYGG 1 cut(s) 136
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 3 cut(s) 278, 370, 374
Cac8I GCNNGC 3 cut(s) 72, 358, 501
CfoI GCGC 2 cut(s) 72, 74
Cfr13I GGNCC 2 cut(s) 316, 449
CseI GACGC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 143, 290
CviAII CATG 3 cut(s) 177, 182, 478
CviQI GTAC 2 cut(s) 143, 290
DdeI CTNAG 1 cut(s) 528
DpnI GATC 3 cut(s) 11, 66, 483
DpnII GATC 3 cut(s) 9, 64, 481
DraI TTTAAA 1 cut(s) 223
Eam1104I CTCTTC 2 cut(s) 48, 198
EarI CTCTTC 2 cut(s) 48, 198
Eco130I CCWWGG 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 346
EcoNI CCTNNNNNAGG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 3 cut(s) 180, 185, 481
FaiI YATR 9 cut(s) 38, 178, 183, 258, 270, 298, 461, 463, 479
FaqI GGGAC 1 cut(s) 317
FatI CATG 3 cut(s) 176, 181, 477
FauI CCCGC 1 cut(s) 496
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 487
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 487
FspBI CTAG 3 cut(s) 275, 357, 500
GlaI GCGC 2 cut(s) 71, 73
GluI GCNGC 1 cut(s) 487
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 1 cut(s) 451
HapII CCGG 2 cut(s) 329, 452
HgaI GACGC 1 cut(s) 182
HhaI GCGC 2 cut(s) 72, 74
Hin1II CATG 3 cut(s) 180, 185, 481
Hin6I GCGC 2 cut(s) 70, 72
HinP1I GCGC 2 cut(s) 70, 72
HindIII AAGCTT 1 cut(s) 436
HpaII CCGG 2 cut(s) 329, 452
Hpy188I TCNGA 2 cut(s) 320, 433
Hpy188III TCNNGA 5 cut(s) 62, 107, 200, 228, 242
HpyAV CCTTC 2 cut(s) 154, 208
HpyCH4V TGCA 2 cut(s) 87, 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 393
HpyF3I CTNAG 1 cut(s) 528
Hsp92II CATG 3 cut(s) 180, 185, 481
HspAI GCGC 2 cut(s) 70, 72
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 3 cut(s) 9, 64, 481
MaeI CTAG 3 cut(s) 275, 357, 500
MalI GATC 3 cut(s) 11, 66, 483
MboI GATC 3 cut(s) 9, 64, 481
MboII GAAGA 6 cut(s) 35, 112, 188, 215, 223, 301
MluCI AATT 2 cut(s) 99, 129
MnlI CCTC 4 cut(s) 199, 294, 353, 361
MseI TTAA 2 cut(s) 132, 222
MspI CCGG 2 cut(s) 329, 452
MspR9I CCNGG 1 cut(s) 329
MvnI CGCG 2 cut(s) 72, 486
MwoI GCNNNNNNNGC 1 cut(s) 393
NciI CCSGG 1 cut(s) 329
NdeII GATC 3 cut(s) 9, 64, 481
NheI GCTAGC 2 cut(s) 356, 499
NlaIII CATG 3 cut(s) 180, 185, 481
NlaIV GGNNCC 1 cut(s) 450
NmeAIII GCCGAG 1 cut(s) 422
NspI RCATGY 1 cut(s) 180
PauI GCGCGC 1 cut(s) 70
PkrI GCNGC 1 cut(s) 488
PshAI GACNNNNGTC 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 450
PspPI GGNCC 2 cut(s) 316, 449
PteI GCGCGC 1 cut(s) 70
RsaI GTAC 2 cut(s) 144, 291
RsaNI GTAC 2 cut(s) 143, 290
SaqAI TTAA 2 cut(s) 132, 222
SatI GCNGC 1 cut(s) 487
Sau3AI GATC 3 cut(s) 9, 64, 481
Sau96I GGNCC 2 cut(s) 316, 449
ScaI AGTACT 1 cut(s) 291
ScrFI CCNGG 1 cut(s) 329
SetI ASST 7 cut(s) 269, 318, 358, 362, 372, 440, 523
SinI GGWCC 1 cut(s) 316
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 2 cut(s) 99, 129
SsiI CCGC 2 cut(s) 486, 503
SspMI CTAG 3 cut(s) 275, 357, 500
StyD4I CCNGG 1 cut(s) 327
StyI CCWWGG 1 cut(s) 408
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 99, 129
TatI WGTACW 1 cut(s) 289
TauI GCSGC 1 cut(s) 489
Tru1I TTAA 2 cut(s) 132, 222
Tru9I TTAA 2 cut(s) 132, 222
TscAI CASTG 3 cut(s) 285, 370, 381
TspDTI ATGAA 2 cut(s) 112, 488
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 3 cut(s) 285, 370, 381
VpaK11BI GGWCC 1 cut(s) 316
XagI CCTNNNNNAGG 1 cut(s) 158
XapI RAATTY 1 cut(s) 99
XceI RCATGY 1 cut(s) 180
XspI CTAG 3 cut(s) 275, 357, 500
ZrmI AGTACT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.