Rorug07G0092700

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000481
Physical Location & Seq
Reverse (-)
7270393 .. 7271879
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0092700.1

Sequence Viewer

Length: 387 bp
ATGGAGAGAGAAGAAGACGACTCGGTGAGCGAGGTTCTCAGAGATCGATTCAGACTCTCCACCATCTCCATCGCCGAAGCCGAAGCGAAGAGAAGCGGCATGGAGATATCGGAACCCGTGGTGGCTTGCATTTCCGACTTGGCCTTCAAATTTACTGAACAATTGGCAAAGGACCTGGAGTTATTTACTCAACACGCTGGTCGTAAATCTGCAAATATGGAAGATGTCATACTTTGTGCACATAGAAATGAACATCTGGCTGCCTTGTTGAGGTCCTACCGTGATGATCTGAAAGCTAAAGAACCTCAGTCTGACAGGAAGAGGAAGAAAGCATCAAAGAAGGATGACAGAGCACCTGAAGATATAGTCCATATTCCAGATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

128

Amino Acids

14.62

Weight (kDa)

5.62

Isoelectric Point (pI)

54.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CENP-S PF15630 13 - 86 2.8e-17 CENP-S protein
CENP-T_C PF15511 29 - 86 1.1e-08 Centromere kinetochore component CENP-T histone fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000481)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20420 FvH4_5g20421 FvH4_5g20430 FvH4_5g20431 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g33280
malus_domestica MD03G1140300.v1.1 MD03G1140400.v1.1 MD11G1171500.v1.1
prunus_persica Prupe.8G112300_v2.0.a1
pyrus_communis pycom03g09520 pycom11g13270
rosa_chinensis RchiOBHm_Chr2g0142431 RchiOBHm_Chr5g0068661 RchiOBHm_Chr6g0271401 RchiOBHm_Chr7g0205561 RchiOBHm_Chr7g0205581 RchiOBHm_Chr7g0205721 RchiOBHm_Chr7g0205741
rosa_laevigata RLG00000003357 RLG00000003358 RLG00000003359 RLG00000003363 RLG00000009087 RLG00000019958 RLG00000035989
rosa_multiflora Rmu_sc0000076.1_g000053 Rmu_sc0000076.1_g000054 Rmu_sc0000076.1_g000055 Rmu_sc0001211.1_g000022 Rmu_sc0001679.1_g000017 Rmu_sc0008518.1_g000018 Rmu_sc0008518.1_g000022 Rmu_sc0008518.1_g000024 Rmu_ssc0000482.1_g000004
rosa_roxburghii Rroxscaffold_1G00012230 Rroxscaffold_2G00102620 Rroxscaffold_3G00252010 Rroxscaffold_3G00252020 Rroxscaffold_3G00252030 Rroxscaffold_3G00252050 Rroxscaffold_7G00197030
rosa_rugosa Rorug02G0372500 Rorug02G0372600 Rorug06G0060800 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092700 Rorug07G0092800
rosa_samantha Rh2AG424300 Rh2BG433900 Rh2CG410900 Rh2DG443900 Rh5AG449900 Rh5DG481500 Rh5DG481700 Rh6AG180000 Rh6BG183200 Rh6CG179900 Rh6DG171700 Rh7AG222800 Rh7AG223900 Rh7AG224200 Rh7AG224300 Rh7BG219100 Rh7BG219200 Rh7BG219300 Rh7BG219500 Rh7CG235600 Rh7CG237400 Rh7CG237700 Rh7CG237800 Rh7DG229400 Rh7DG229600 Rh7DG231000
rosa_wichuraiana Rw2G034750 Rw5G042000 Rw6G015460 Rw7G019220 Rw7G019310 Rw7G019320 Rw7G019330 Rw7G019340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AcsI RAATTY 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 378
AfiI CCNNNNNNNGG 1 cut(s) 270
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw21I GWGCWC 2 cut(s) 241, 355
Alw44I GTGCAC 1 cut(s) 237
AoxI GGCC 1 cut(s) 141
ApaLI GTGCAC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 172, 273
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 2 cut(s) 172, 273
BaeGI GKGCMC 1 cut(s) 241
BarI GAAGNNNNNNTAC 2 cut(s) 213, 245
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 2 cut(s) 241, 355
BbvI GCAGC 1 cut(s) 247
BccI CCATC 2 cut(s) 71, 77
BciT130I CCWGG 1 cut(s) 176
BfaI CTAG 1 cut(s) 385
BisI GCNGC 2 cut(s) 97, 261
BlsI GCNGC 2 cut(s) 98, 262
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 2 cut(s) 172, 273
BmgT120I GGNCC 2 cut(s) 172, 273
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 197
Bsa29I ATCGAT 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 176
BseCI ATCGAT 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 52, 320
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 1 cut(s) 247
BshFI GGCC 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 241, 355
BslI CCNNNNNNNGG 1 cut(s) 270
BsnI GGCC 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 241, 355
Bsp143I GATC 2 cut(s) 43, 286
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 2 cut(s) 51, 319
BspDI ATCGAT 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 2 cut(s) 43, 286
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 2 cut(s) 83, 314
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 2 cut(s) 38, 306
BstDSI CCRYGG 1 cut(s) 117
BstENI CCTNNNNNAGG 1 cut(s) 268
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 2 cut(s) 46, 289
BstMBI GATC 2 cut(s) 43, 286
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 247
BstV2I GAAGAC 1 cut(s) 21
Bsu15I ATCGAT 1 cut(s) 46
BsuRI GGCC 1 cut(s) 143
BsuTUI ATCGAT 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 117
BtgZI GCGATG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 172, 273
ClaI ATCGAT 1 cut(s) 46
CviAII CATG 1 cut(s) 100
CviJI RGCY 5 cut(s) 80, 125, 143, 260, 296
CviKI_1 RGCY 5 cut(s) 80, 125, 143, 260, 296
DdeI CTNAG 2 cut(s) 38, 306
DpnI GATC 2 cut(s) 45, 288
DpnII GATC 2 cut(s) 43, 286
Eam1104I CTCTTC 2 cut(s) 83, 314
EarI CTCTTC 2 cut(s) 83, 314
Eco32I GATATC 2 cut(s) 108, 382
Eco47I GGWCC 2 cut(s) 172, 273
Eco57I CTGAAG 1 cut(s) 378
EcoNI CCTNNNNNAGG 1 cut(s) 268
EcoO109I RGGNCCY 2 cut(s) 172, 273
EcoRII CCWGG 1 cut(s) 174
EcoRV GATATC 2 cut(s) 108, 382
FaeI CATG 1 cut(s) 103
FaiI YATR 6 cut(s) 101, 218, 230, 243, 365, 372
FatI CATG 1 cut(s) 99
Fnu4HI GCNGC 2 cut(s) 97, 261
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 2 cut(s) 97, 261
FspBI CTAG 1 cut(s) 385
GluI GCNGC 2 cut(s) 97, 261
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 143
Hin1II CATG 1 cut(s) 103
HinfI GANTC 3 cut(s) 20, 48, 54
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 6 cut(s) 41, 53, 112, 136, 291, 313
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 154, 334
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 3 cut(s) 129, 212, 239
HpyF3I CTNAG 2 cut(s) 38, 306
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 2 cut(s) 43, 286
LpnPI CCDG 6 cut(s) 161, 183, 188, 242, 301, 369
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 1 cut(s) 341
MaeI CTAG 1 cut(s) 385
MalI GATC 2 cut(s) 45, 288
MboI GATC 2 cut(s) 43, 286
MboII GAAGA 7 cut(s) 23, 26, 100, 233, 331, 337, 371
MfeI CAATTG 1 cut(s) 161
MhlI GDGCHC 2 cut(s) 241, 355
MluCI AATT 2 cut(s) 149, 161
MlyI GAGTC 2 cut(s) 14, 48
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 4 cut(s) 25, 264, 315, 315
MslI CAYNNNNRTG 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 176
MunI CAATTG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 176
NdeII GATC 2 cut(s) 43, 286
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 2 cut(s) 98, 262
PleI GAGTC 2 cut(s) 14, 48
PpsI GAGTC 2 cut(s) 14, 48
PpuMI RGGWCCY 2 cut(s) 172, 273
Psp5II RGGWCCY 2 cut(s) 172, 273
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 2 cut(s) 172, 273
PspPPI RGGWCCY 2 cut(s) 172, 273
RseI CAYNNNNRTG 1 cut(s) 246
SatI GCNGC 2 cut(s) 97, 261
Sau3AI GATC 2 cut(s) 43, 286
Sau96I GGNCC 2 cut(s) 172, 273
SchI GAGTC 2 cut(s) 14, 48
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 2 cut(s) 241, 355
SetI ASST 6 cut(s) 36, 177, 275, 298, 307, 358
SfaNI GCATC 1 cut(s) 341
SinI GGWCC 2 cut(s) 172, 273
SmiMI CAYNNNNRTG 1 cut(s) 246
Sse9I AATT 2 cut(s) 149, 161
SsiI CCGC 1 cut(s) 96
SspMI CTAG 1 cut(s) 385
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 46
TasI AATT 2 cut(s) 149, 161
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 48
TseI GCWGC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 264
VneI GTGCAC 1 cut(s) 237
VpaK11BI GGWCC 2 cut(s) 172, 273
XagI CCTNNNNNAGG 1 cut(s) 268
XapI RAATTY 1 cut(s) 149
XspI CTAG 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.