Rorug02G0372600

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000481
Physical Location & Seq
Reverse (-)
47497906 .. 47498799
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0372600.1

Sequence Viewer

Length: 774 bp
ATGTATTCTGCAATTTCGTTAGTCAAGATTGAATACACCCCCCTTAGCATTGAATTGGTGGGGAAATTGAAAGATAGTGCTGCGAGTGATGCGGAGAAAGCCAAATTGGTGAACAAGAAACACCTTCTTCATTTGACACTAGGGTTCAGCCCGAAGAGCGAGGGCAACCAGAGTAGCATCCAGGAAGCAGTATTGAATGCCTTACAGCCAAATTCAAATCTTGAATCCTTAGAGATTGAAGGTTACAGTGGCAGCACCGTGTTCCCCAATTGGACCTCCTGTTTAATTAACTTGAAAAGCCTGACCTTCTTCGGGTGCGGTGTTTGTAAGTATGTGCCTCTTTCGGTTTTGGGCTACTTGGGGTCCCTTGAGAGACTCAGATTTTTCAACATGAAAGAAGTGAAAAAGGTTGGATTTGAGTACTCACTTGATCATCAAGTTATATTGTTCCCCAATCTGAAACAACGCGAGTTTAAGGATATGTGGGAGTGGGAAGAATGGGATCATGATGAGAATGATGCTACTTCATCGTCACCAACTTGTTTCATGCCACGCCTTTCTACTTTATCCATCTTGGAATGCACTAAGCTGAAGACACTGCCAGACTTCCTTCCAAGGAAGACGCCGCTGCTTCAGAATTTGATCATCAACTGGTGTGACATTCTCTCCCAAAGTTGCAAAGACAGGCAAGGCCCGGAGTGGTCCAAGATTTCTCACATCCCAAACATCAAAGTTGATCGCAAAATTGTACAAAAAGATGGAGTTTGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

257

Amino Acids

29.26

Weight (kDa)

6.95

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 15 - 131 1.5e-24 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000481)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20420 FvH4_5g20421 FvH4_5g20430 FvH4_5g20431 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g33280
malus_domestica MD03G1140300.v1.1 MD03G1140400.v1.1 MD11G1171500.v1.1
prunus_persica Prupe.8G112300_v2.0.a1
pyrus_communis pycom03g09520 pycom11g13270
rosa_chinensis RchiOBHm_Chr2g0142431 RchiOBHm_Chr5g0068661 RchiOBHm_Chr6g0271401 RchiOBHm_Chr7g0205561 RchiOBHm_Chr7g0205581 RchiOBHm_Chr7g0205721 RchiOBHm_Chr7g0205741
rosa_laevigata RLG00000003357 RLG00000003358 RLG00000003359 RLG00000003363 RLG00000009087 RLG00000019958 RLG00000035989
rosa_multiflora Rmu_sc0000076.1_g000053 Rmu_sc0000076.1_g000054 Rmu_sc0000076.1_g000055 Rmu_sc0001211.1_g000022 Rmu_sc0001679.1_g000017 Rmu_sc0008518.1_g000018 Rmu_sc0008518.1_g000022 Rmu_sc0008518.1_g000024 Rmu_ssc0000482.1_g000004
rosa_roxburghii Rroxscaffold_1G00012230 Rroxscaffold_2G00102620 Rroxscaffold_3G00252010 Rroxscaffold_3G00252020 Rroxscaffold_3G00252030 Rroxscaffold_3G00252050 Rroxscaffold_7G00197030
rosa_rugosa Rorug02G0372500 Rorug02G0372600 Rorug06G0060800 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092700 Rorug07G0092800
rosa_samantha Rh2AG424300 Rh2BG433900 Rh2CG410900 Rh2DG443900 Rh5AG449900 Rh5DG481500 Rh5DG481700 Rh6AG180000 Rh6BG183200 Rh6CG179900 Rh6DG171700 Rh7AG222800 Rh7AG223900 Rh7AG224200 Rh7AG224300 Rh7BG219100 Rh7BG219200 Rh7BG219300 Rh7BG219500 Rh7CG235600 Rh7CG237400 Rh7CG237700 Rh7CG237800 Rh7DG229400 Rh7DG229600 Rh7DG231000
rosa_wichuraiana Rw2G034750 Rw5G042000 Rw6G015460 Rw7G019220 Rw7G019310 Rw7G019320 Rw7G019330 Rw7G019340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 468
AciI CCGC 3 cut(s) 92, 318, 626
AclWI GGATC 1 cut(s) 510
AcsI RAATTY 2 cut(s) 211, 637
AcuI CTGAAG 2 cut(s) 611, 617
AcyI GRCGYC 1 cut(s) 623
AfaI GTAC 2 cut(s) 422, 750
AfiI CCNNNNNNNGG 1 cut(s) 312
AgsI TTSAA 9 cut(s) 32, 53, 70, 196, 216, 224, 239, 295, 388
AjnI CCWGG 1 cut(s) 180
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 1 cut(s) 589
AluI AGCT 1 cut(s) 589
Alw26I GTCTC 1 cut(s) 367
AlwI GGATC 1 cut(s) 510
AoxI GGCC 1 cut(s) 691
ApeKI GCWGC 3 cut(s) 80, 252, 628
ApoI RAATTY 2 cut(s) 211, 637
AspS9I GGNCC 4 cut(s) 273, 363, 692, 702
AsuC2I CCSGG 1 cut(s) 695
AsuHPI GGTGA 2 cut(s) 121, 525
AvaII GGWCC 3 cut(s) 273, 363, 702
BbsI GAAGAC 2 cut(s) 599, 626
BbvI GCAGC 3 cut(s) 67, 264, 615
BccI CCATC 2 cut(s) 578, 752
BciT130I CCWGG 1 cut(s) 182
BclI TGATCA 2 cut(s) 430, 642
BcnI CCSGG 1 cut(s) 695
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 1 cut(s) 140
BisI GCNGC 4 cut(s) 81, 253, 626, 629
BlsI GCNGC 4 cut(s) 82, 254, 627, 630
BmcAI AGTACT 1 cut(s) 422
Bme1390I CCNGG 2 cut(s) 182, 695
Bme18I GGWCC 3 cut(s) 273, 363, 702
BmgT120I GGNCC 4 cut(s) 273, 363, 692, 702
BmiI GGNNCC 2 cut(s) 364, 365
BmrFI CCNGG 2 cut(s) 182, 695
BmsI GCATC 3 cut(s) 79, 186, 508
BpiI GAAGAC 2 cut(s) 599, 626
Bpu10I CCTNAGC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 695
BsaHI GRCGYC 1 cut(s) 623
BsaJI CCNNGG 1 cut(s) 614
BsaXI ACNNNNNCTCC 2 cut(s) 650, 680
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse1I ACTGG 1 cut(s) 656
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 614
BseGI GGATG 2 cut(s) 177, 717
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMII CTCAG 1 cut(s) 391
BseNI ACTGG 1 cut(s) 656
BseXI GCAGC 3 cut(s) 67, 264, 615
Bsh1236I CGCG 1 cut(s) 468
BshFI GGCC 1 cut(s) 693
BsiSI CCGG 1 cut(s) 695
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 312
BsmAI GTCTC 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 349
BsmI GAATGC 2 cut(s) 202, 584
BsnI GGCC 1 cut(s) 693
Bsp1407I TGTACA 1 cut(s) 748
Bsp143I GATC 4 cut(s) 430, 502, 642, 736
BspACI CCGC 3 cut(s) 92, 318, 626
BspANI GGCC 1 cut(s) 693
BspCNI CTCAG 1 cut(s) 390
BspFNI CGCG 1 cut(s) 468
BspHI TCATGA 1 cut(s) 505
BspLI GGNNCC 2 cut(s) 364, 365
BspPI GGATC 1 cut(s) 510
BspQI GCTCTTC 1 cut(s) 149
BsrGI TGTACA 1 cut(s) 748
BsrI ACTGG 1 cut(s) 656
BssECI CCNNGG 1 cut(s) 614
BssMI GATC 4 cut(s) 430, 502, 642, 736
BssNI GRCGYC 1 cut(s) 623
BssT1I CCWWGG 1 cut(s) 614
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 2 cut(s) 248, 259
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 623
BstAUI TGTACA 1 cut(s) 748
BstDEI CTNAG 4 cut(s) 44, 229, 377, 585
BstF5I GGATG 2 cut(s) 177, 717
BstFNI CGCG 1 cut(s) 468
BstKTI GATC 4 cut(s) 433, 505, 645, 739
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 4 cut(s) 430, 502, 642, 736
BstMWI GCNNNNNNNGC 3 cut(s) 89, 98, 156
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 2 cut(s) 180, 693
BstUI CGCG 1 cut(s) 468
BstV1I GCAGC 3 cut(s) 67, 264, 615
BstV2I GAAGAC 2 cut(s) 599, 626
BsuRI GGCC 1 cut(s) 693
BtsCI GGATG 2 cut(s) 177, 717
BtsI GCAGTG 1 cut(s) 596
BtsIMutI CAGTG 2 cut(s) 253, 596
CciI TCATGA 1 cut(s) 505
Cfr13I GGNCC 4 cut(s) 273, 363, 692, 702
CseI GACGC 1 cut(s) 631
Csp6I GTAC 2 cut(s) 421, 749
CviAII CATG 3 cut(s) 391, 506, 547
CviJI RGCY 7 cut(s) 101, 150, 208, 300, 354, 589, 693
CviKI_1 RGCY 7 cut(s) 101, 150, 208, 300, 354, 589, 693
CviQI GTAC 2 cut(s) 421, 749
DdeI CTNAG 4 cut(s) 44, 229, 377, 585
DpnI GATC 4 cut(s) 432, 504, 644, 738
DpnII GATC 4 cut(s) 430, 502, 642, 736
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 614
Eco47I GGWCC 3 cut(s) 273, 363, 702
Eco57I CTGAAG 2 cut(s) 611, 617
EcoO109I RGGNCCY 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 614
ErhI CCWWGG 1 cut(s) 614
FaeI CATG 3 cut(s) 394, 509, 550
FaiI YATR 6 cut(s) 333, 392, 443, 482, 507, 548
FaqI GGGAC 1 cut(s) 349
FatI CATG 3 cut(s) 390, 505, 546
FbaI TGATCA 2 cut(s) 430, 642
Fnu4HI GCNGC 4 cut(s) 81, 253, 626, 629
FokI GGATG 2 cut(s) 164, 704
Fsp4HI GCNGC 4 cut(s) 81, 253, 626, 629
FspBI CTAG 1 cut(s) 140
GluI GCNGC 4 cut(s) 81, 253, 626, 629
HaeIII GGCC 1 cut(s) 693
HapII CCGG 1 cut(s) 695
HgaI GACGC 1 cut(s) 631
Hin1I GRCGYC 1 cut(s) 623
Hin1II CATG 3 cut(s) 394, 509, 550
HinfI GANTC 2 cut(s) 224, 375
HpaII CCGG 1 cut(s) 695
HphI GGTGA 2 cut(s) 121, 525
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 3 cut(s) 380, 459, 636
Hpy188III TCNNGA 3 cut(s) 25, 221, 506
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 4 cut(s) 134, 233, 316, 620
HpyCH4III ACNGT 2 cut(s) 248, 259
HpyCH4V TGCA 3 cut(s) 11, 582, 678
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 98, 156
HpyF3I CTNAG 4 cut(s) 44, 229, 377, 585
Hsp92I GRCGYC 1 cut(s) 623
Hsp92II CATG 3 cut(s) 394, 509, 550
KflI GGGWCCC 1 cut(s) 363
Ksp22I TGATCA 2 cut(s) 430, 642
Kzo9I GATC 4 cut(s) 430, 502, 642, 736
LguI GCTCTTC 1 cut(s) 149
LpnPI CCDG 9 cut(s) 167, 182, 194, 292, 314, 615, 637, 670, 708
Lsp1109I GCAGC 3 cut(s) 67, 264, 615
LweI GCATC 3 cut(s) 79, 186, 508
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 3 cut(s) 242, 531, 656
MalI GATC 4 cut(s) 432, 504, 644, 738
MboI GATC 4 cut(s) 430, 502, 642, 736
MboII GAAGA 6 cut(s) 119, 166, 301, 506, 604, 631
MfeI CAATTG 1 cut(s) 268
MluCI AATT 9 cut(s) 12, 53, 65, 104, 211, 268, 285, 637, 744
MlyI GAGTC 1 cut(s) 369
MmeI TCCRAC 1 cut(s) 391
MnlI CCTC 3 cut(s) 154, 286, 348
MseI TTAA 3 cut(s) 284, 288, 474
MspA1I CMGCKG 1 cut(s) 628
MspI CCGG 1 cut(s) 695
MspR9I CCNGG 2 cut(s) 182, 695
MunI CAATTG 1 cut(s) 268
Mva1269I GAATGC 2 cut(s) 202, 584
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 1 cut(s) 468
MwoI GCNNNNNNNGC 3 cut(s) 89, 98, 156
NciI CCSGG 1 cut(s) 695
NdeII GATC 4 cut(s) 430, 502, 642, 736
NlaIII CATG 3 cut(s) 394, 509, 550
NlaIV GGNNCC 2 cut(s) 364, 365
NmuCI GTSAC 2 cut(s) 531, 656
PacI TTAATTAA 1 cut(s) 288
PagI TCATGA 1 cut(s) 505
PciSI GCTCTTC 1 cut(s) 149
PctI GAATGC 2 cut(s) 202, 584
PfeI GAWTC 1 cut(s) 224
PfoI TCCNGGA 1 cut(s) 180
PkrI GCNGC 4 cut(s) 82, 254, 627, 630
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
PpuMI RGGWCCY 1 cut(s) 363
Psp5II RGGWCCY 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 364, 365
PspPI GGNCC 4 cut(s) 273, 363, 692, 702
PspPPI RGGWCCY 1 cut(s) 363
RsaI GTAC 2 cut(s) 422, 750
RsaNI GTAC 2 cut(s) 421, 749
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 3 cut(s) 284, 288, 474
SatI GCNGC 4 cut(s) 81, 253, 626, 629
Sau3AI GATC 4 cut(s) 430, 502, 642, 736
Sau96I GGNCC 4 cut(s) 273, 363, 692, 702
ScaI AGTACT 1 cut(s) 422
SchI GAGTC 1 cut(s) 369
ScrFI CCNGG 2 cut(s) 182, 695
SetI ASST 6 cut(s) 126, 244, 278, 308, 411, 591
SfaNI GCATC 3 cut(s) 79, 186, 508
SinI GGWCC 3 cut(s) 273, 363, 702
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 9 cut(s) 12, 53, 65, 104, 211, 268, 285, 637, 744
SsiI CCGC 3 cut(s) 92, 318, 626
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 180, 693
StyI CCWWGG 1 cut(s) 614
TaaI ACNGT 2 cut(s) 248, 259
TasI AATT 9 cut(s) 12, 53, 65, 104, 211, 268, 285, 637, 744
TatI WGTACW 2 cut(s) 420, 748
TauI GCSGC 1 cut(s) 628
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 3 cut(s) 284, 288, 474
Tru9I TTAA 3 cut(s) 284, 288, 474
TscAI CASTG 2 cut(s) 253, 603
TseFI GTSAC 2 cut(s) 531, 656
TseI GCWGC 3 cut(s) 80, 252, 628
Tsp45I GTSAC 2 cut(s) 531, 656
TspDTI ATGAA 4 cut(s) 119, 407, 516, 535
TspRI CASTG 2 cut(s) 253, 603
VpaK11BI GGWCC 3 cut(s) 273, 363, 702
XapI RAATTY 2 cut(s) 211, 637
XspI CTAG 1 cut(s) 140
ZrmI AGTACT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.