Rorug02G0372500

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
47486557 .. 47497705
11149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0372500.1

Sequence Viewer

Length: 381 bp
ATGATCCGAAAGTCTCATTTGAGTTCTCGTTCAAGACTTTCGTGTCATGCTGACCTCTGTATAGTATGGCAGATTGAAGACTTTGTGCAACTCCGTTTAATGTGTTTGGGAATTTCATATTCTCACCCAGTCATATCACCCTCCAGGATATCATCACTCCTCTTCTTTTTTATACCGCAGCTCCTTAAAAGCGGCTCCAGATTTTCATGGAATATTGGAAAGGTGGAAGCCTGGAATCTCATTGGATGTGACCTCTTTGATGTAGGCCAAATTGAGGAGTGGGAAGGAATGGCAGCTGGGTCTGGGTGGAGCGGAGAGGTTGATTCTCAAATTAAAGACACCTCTGCGAAATTTGAGGATTATATGTTGCTCAATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.26

Weight (kDa)

5.51

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000481)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20420 FvH4_5g20421 FvH4_5g20430 FvH4_5g20431 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g33280
malus_domestica MD03G1140300.v1.1 MD03G1140400.v1.1 MD11G1171500.v1.1
prunus_persica Prupe.8G112300_v2.0.a1
pyrus_communis pycom03g09520 pycom11g13270
rosa_chinensis RchiOBHm_Chr2g0142431 RchiOBHm_Chr5g0068661 RchiOBHm_Chr6g0271401 RchiOBHm_Chr7g0205561 RchiOBHm_Chr7g0205581 RchiOBHm_Chr7g0205721 RchiOBHm_Chr7g0205741
rosa_laevigata RLG00000003357 RLG00000003358 RLG00000003359 RLG00000003363 RLG00000009087 RLG00000019958 RLG00000035989
rosa_multiflora Rmu_sc0000076.1_g000053 Rmu_sc0000076.1_g000054 Rmu_sc0000076.1_g000055 Rmu_sc0001211.1_g000022 Rmu_sc0001679.1_g000017 Rmu_sc0008518.1_g000018 Rmu_sc0008518.1_g000022 Rmu_sc0008518.1_g000024 Rmu_ssc0000482.1_g000004
rosa_roxburghii Rroxscaffold_1G00012230 Rroxscaffold_2G00102620 Rroxscaffold_3G00252010 Rroxscaffold_3G00252020 Rroxscaffold_3G00252030 Rroxscaffold_3G00252050 Rroxscaffold_7G00197030
rosa_rugosa Rorug02G0372500 Rorug02G0372600 Rorug06G0060800 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092700 Rorug07G0092800
rosa_samantha Rh2AG424300 Rh2BG433900 Rh2CG410900 Rh2DG443900 Rh5AG449900 Rh5DG481500 Rh5DG481700 Rh6AG180000 Rh6BG183200 Rh6CG179900 Rh6DG171700 Rh7AG222800 Rh7AG223900 Rh7AG224200 Rh7AG224300 Rh7BG219100 Rh7BG219200 Rh7BG219300 Rh7BG219500 Rh7CG235600 Rh7CG237400 Rh7CG237700 Rh7CG237800 Rh7DG229400 Rh7DG229600 Rh7DG231000
rosa_wichuraiana Rw2G034750 Rw5G042000 Rw6G015460 Rw7G019220 Rw7G019310 Rw7G019320 Rw7G019330 Rw7G019340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 42
AccBSI CCGCTC 1 cut(s) 312
AciI CCGC 3 cut(s) 176, 192, 312
AcsI RAATTY 2 cut(s) 111, 350
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 2 cut(s) 33, 77
AjnI CCWGG 2 cut(s) 143, 230
AluBI AGCT 2 cut(s) 181, 296
AluI AGCT 2 cut(s) 181, 296
Alw26I GTCTC 1 cut(s) 18
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 178, 293
ApoI RAATTY 2 cut(s) 111, 350
AsuHPI GGTGA 2 cut(s) 116, 129
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 190, 305
BciT130I CCWGG 2 cut(s) 145, 232
BcoDI GTCTC 1 cut(s) 18
BisI GCNGC 3 cut(s) 179, 193, 294
BlsI GCNGC 3 cut(s) 180, 194, 295
Bme1390I CCNGG 2 cut(s) 145, 232
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 145, 232
BmrI ACTGGG 1 cut(s) 122
BmuI ACTGGG 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 84
BpmI CTGGAG 2 cut(s) 127, 181
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 2 cut(s) 145, 232
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 2 cut(s) 149, 290
BseXI GCAGC 2 cut(s) 190, 305
BseYI CCCAGC 1 cut(s) 296
BshFI GGCC 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 18
BsnI GGCC 1 cut(s) 267
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 3 cut(s) 176, 192, 312
BspANI GGCC 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 196
BsrBI CCGCTC 1 cut(s) 312
BsrI ACTGG 1 cut(s) 128
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 2 cut(s) 145, 232
Bst6I CTCTTC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 1 cut(s) 3
BstNI CCWGG 2 cut(s) 145, 232
BstSCI CCNGG 2 cut(s) 143, 230
BstV1I GCAGC 2 cut(s) 190, 305
BstV2I GAAGAC 1 cut(s) 84
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 1 cut(s) 251
CviAII CATG 2 cut(s) 47, 207
CviJI RGCY 5 cut(s) 181, 195, 230, 267, 296
CviKI_1 RGCY 5 cut(s) 181, 195, 230, 267, 296
DdeI CTNAG 1 cut(s) 378
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DrdI GACNNNNNNGTC 1 cut(s) 42
DseDI GACNNNNNNGTC 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco32I GATATC 1 cut(s) 150
EcoRII CCWGG 2 cut(s) 143, 230
EcoRV GATATC 1 cut(s) 150
FaeI CATG 2 cut(s) 50, 210
FaiI YATR 9 cut(s) 48, 62, 67, 118, 134, 173, 208, 363, 365
FatI CATG 2 cut(s) 46, 206
Fnu4HI GCNGC 3 cut(s) 179, 193, 294
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 3 cut(s) 179, 193, 294
GluI GCNGC 3 cut(s) 179, 193, 294
GsaI CCCAGC 1 cut(s) 300
GsuI CTGGAG 2 cut(s) 127, 181
HaeIII GGCC 1 cut(s) 267
Hin1II CATG 2 cut(s) 50, 210
HinfI GANTC 2 cut(s) 235, 323
HphI GGTGA 2 cut(s) 116, 129
Hpy188I TCNGA 1 cut(s) 8
Hpy188III TCNNGA 2 cut(s) 33, 198
HpyAV CCTTC 1 cut(s) 278
HpyCH4V TGCA 1 cut(s) 88
HpyF3I CTNAG 1 cut(s) 378
Hsp92II CATG 2 cut(s) 50, 210
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 3 cut(s) 186, 200, 309
LpnPI CCDG 8 cut(s) 130, 141, 157, 211, 217, 244, 282, 288
Lsp1109I GCAGC 2 cut(s) 190, 305
MaeIII GTNAC 1 cut(s) 248
MalI GATC 1 cut(s) 5
MbiI CCGCTC 1 cut(s) 312
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 89, 154
MluCI AATT 5 cut(s) 111, 270, 330, 350, 373
MnlI CCTC 8 cut(s) 65, 151, 170, 263, 268, 310, 349, 352
MseI TTAA 3 cut(s) 98, 186, 333
MspA1I CMGCKG 1 cut(s) 296
MspR9I CCNGG 2 cut(s) 145, 232
MvaI CCWGG 2 cut(s) 145, 232
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 50, 210
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 248
PfeI GAWTC 2 cut(s) 235, 323
PfoI TCCNGGA 1 cut(s) 143
PkrI GCNGC 3 cut(s) 180, 194, 295
Psp6I CCWGG 2 cut(s) 143, 230
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 2 cut(s) 143, 230
PspN4I GGNNCC 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 296
SaqAI TTAA 3 cut(s) 98, 186, 333
SatI GCNGC 3 cut(s) 179, 193, 294
Sau3AI GATC 1 cut(s) 3
ScrFI CCNGG 2 cut(s) 145, 232
SetI ASST 7 cut(s) 57, 183, 225, 255, 298, 321, 344
Sse9I AATT 5 cut(s) 111, 270, 330, 350, 373
SsiI CCGC 3 cut(s) 176, 192, 312
SspI AATATT 1 cut(s) 214
StyD4I CCNGG 2 cut(s) 143, 230
TasI AATT 5 cut(s) 111, 270, 330, 350, 373
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 2 cut(s) 235, 323
Tru1I TTAA 3 cut(s) 98, 186, 333
Tru9I TTAA 3 cut(s) 98, 186, 333
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 2 cut(s) 178, 293
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 2 cut(s) 105, 195
TspGWI ACGGA 1 cut(s) 83
XapI RAATTY 2 cut(s) 111, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.