Rh7CG237400

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000481
Physical Location & Seq
Reverse (-)
22223187 .. 22224767
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG237400.1

Sequence Viewer

Length: 1068 bp
ATGGCTGCAGTTGCTCAAGCCTTGGAGACCTCAAACGTCACAAGCATCAAATCACTAGCTGAGTCACCAGCTCTCAGCTCTGTCCCTTCCGCTTACGCCTTCAACATAAACCCCAATGATGAAGCTGATCCAAATGACCCTGAGTTTGCTATTCCCATTGTTGATATGTCACTTCTCATCTCTGGTTCTCCTGATCAGCGGGCCCAAATCGTCCGCGATCTTGTCAAAATTTGTGAAGAATGGGGCTTCTTCATCGCAATTAACCACGGAGTACCAGAGAGCCTAATGAAGGGGATGATCGACGCATGCCATGGATTTTTCAGTCTTCCAGATGAGGAGAAGAAGGAGTTTAAATCAGGAAATGATGTTCTTGAGATGTTCAAGTATGGTACAAGTTATAATCTTGCATTGGATAAAGTTCTTCTATGGAGGGACTTCTTTAAGGCCAGAACACATCCAGAGTTCTACTCCCTCTACAAACCAGCTAGCTTCAGTGAGGTTTCACTGGAGTTCGGCAAAAGAACAAGAGAAGTGGCACTAGAAATCACAAAAGCAATATCAGAAAGCCTGGGATTGGAGCCGAATTACATATACGAGACAATGAACATGGATCGCGGCTTACAATTGCTAGCCGGCAATTACTACCCACCTTGCCCTCAGCCAGAACATGCAATCGGTATACCACATCATACCGATCACGGTCTAGCCACACTGCTCATCCAGAATGAGATGAATGGCCTCCAAGTCGAACACAACGGAAAATGGCTCACTGTTAATGGCCCTTCCAATGGCTTCTTTGTGAACCTTGCTGATCAAATGCAGATTCTAACCAACGGTAAATACAAGAGTGTGATGCATAGGGCAACTGTTAATAACACAGCGACAAGGATATCCATAGCCATACCACATGGACCTTCTATAGATACAATCATCGCACCAGCACCAGAGTTGTGTGAAAGAGAAGGCCAAGCTCCAAAGTACCTTGCAATGAACTATAAAGAGTACATACAACTTCAACAAAGTGGCAAGAACTACATGAAGTCCACCTTCGATCACATCCGAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

355

Amino Acids

39.61

Weight (kDa)

5.4

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 51 - 155 4.2e-25 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 208 - 302 3.7e-28 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000481)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20420 FvH4_5g20421 FvH4_5g20430 FvH4_5g20431 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g33280
malus_domestica MD03G1140300.v1.1 MD03G1140400.v1.1 MD11G1171500.v1.1
prunus_persica Prupe.8G112300_v2.0.a1
pyrus_communis pycom03g09520 pycom11g13270
rosa_chinensis RchiOBHm_Chr2g0142431 RchiOBHm_Chr5g0068661 RchiOBHm_Chr6g0271401 RchiOBHm_Chr7g0205561 RchiOBHm_Chr7g0205581 RchiOBHm_Chr7g0205721 RchiOBHm_Chr7g0205741
rosa_laevigata RLG00000003357 RLG00000003358 RLG00000003359 RLG00000003363 RLG00000009087 RLG00000019958 RLG00000035989
rosa_multiflora Rmu_sc0000076.1_g000053 Rmu_sc0000076.1_g000054 Rmu_sc0000076.1_g000055 Rmu_sc0001211.1_g000022 Rmu_sc0001679.1_g000017 Rmu_sc0008518.1_g000018 Rmu_sc0008518.1_g000022 Rmu_sc0008518.1_g000024 Rmu_ssc0000482.1_g000004
rosa_roxburghii Rroxscaffold_1G00012230 Rroxscaffold_2G00102620 Rroxscaffold_3G00252010 Rroxscaffold_3G00252020 Rroxscaffold_3G00252030 Rroxscaffold_3G00252050 Rroxscaffold_7G00197030
rosa_rugosa Rorug02G0372500 Rorug02G0372600 Rorug06G0060800 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092700 Rorug07G0092800
rosa_samantha Rh2AG424300 Rh2BG433900 Rh2CG410900 Rh2DG443900 Rh5AG449900 Rh5DG481500 Rh5DG481700 Rh6AG180000 Rh6BG183200 Rh6CG179900 Rh6DG171700 Rh7AG222800 Rh7AG223900 Rh7AG224200 Rh7AG224300 Rh7BG219100 Rh7BG219200 Rh7BG219300 Rh7BG219500 Rh7CG235600 Rh7CG237400 Rh7CG237700 Rh7CG237800 Rh7DG229400 Rh7DG229600 Rh7DG231000
rosa_wichuraiana Rw2G034750 Rw5G042000 Rw6G015460 Rw7G019220 Rw7G019310 Rw7G019320 Rw7G019330 Rw7G019340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 399
AccI GTMKAC 1 cut(s) 679
AccII CGCG 2 cut(s) 216, 615
AciI CCGC 4 cut(s) 90, 199, 214, 615
AclWI GGATC 2 cut(s) 122, 618
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 475
AfaI GTAC 4 cut(s) 273, 391, 980, 1004
AfiI CCNNNNNNNGG 3 cut(s) 289, 574, 788
AgsI TTSAA 3 cut(s) 103, 382, 1016
AjnI CCWGG 1 cut(s) 567
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
AluBI AGCT 7 cut(s) 59, 71, 78, 125, 485, 489, 971
AluI AGCT 7 cut(s) 59, 71, 78, 125, 485, 489, 971
Alw26I GTCTC 2 cut(s) 20, 590
AlwI GGATC 2 cut(s) 122, 618
AoxI GGCC 5 cut(s) 201, 444, 736, 778, 964
ApaI GGGCCC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 228
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AspS9I GGNCC 4 cut(s) 201, 202, 779, 911
AsuHPI GGTGA 1 cut(s) 57
AsuNHI GCTAGC 2 cut(s) 485, 628
AvaII GGWCC 1 cut(s) 911
BaeGI GKGCMC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 317
BbvCI CCTCAGC 1 cut(s) 657
BciT130I CCWGG 1 cut(s) 569
BclI TGATCA 2 cut(s) 193, 811
BcoDI GTCTC 2 cut(s) 20, 590
BfaI CTAG 6 cut(s) 56, 486, 539, 629, 704, 1066
BfmI CTRYAG 2 cut(s) 6, 918
BisI GCNGC 2 cut(s) 6, 616
BlsI GCNGC 2 cut(s) 7, 617
Bme1390I CCNGG 1 cut(s) 569
Bme18I GGWCC 1 cut(s) 911
BmgT120I GGNCC 4 cut(s) 201, 202, 779, 911
BmiI GGNNCC 2 cut(s) 203, 579
BmrFI CCNGG 1 cut(s) 569
BmsI GCATC 2 cut(s) 54, 843
BmtI GCTAGC 2 cut(s) 489, 632
BpiI GAAGAC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 452, 484
BpmI CTGGAG 1 cut(s) 527
Bpu10I CCTNAGC 1 cut(s) 657
BpuEI CTTGAG 1 cut(s) 392
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 4 cut(s) 21, 265, 310, 568
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 574, 788
Bse118I RCCGGY 1 cut(s) 632
Bse1I ACTGG 1 cut(s) 510
Bse3DI GCAATG 1 cut(s) 993
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 4 cut(s) 21, 265, 310, 568
BseGI GGATG 4 cut(s) 300, 454, 717, 1056
BseLI CCNNNNNNNGG 3 cut(s) 289, 574, 788
BseMI GCAATG 1 cut(s) 993
BseMII CTCAG 4 cut(s) 51, 88, 132, 671
BseNI ACTGG 1 cut(s) 510
BseRI GAGGAG 1 cut(s) 350
BseSI GKGCMC 1 cut(s) 205
Bsh1236I CGCG 2 cut(s) 216, 615
BshFI GGCC 5 cut(s) 203, 446, 738, 780, 966
BsiSI CCGG 1 cut(s) 633
BslFI GGGAC 2 cut(s) 68, 446
BslI CCNNNNNNNGG 3 cut(s) 289, 574, 788
BsmAI GTCTC 2 cut(s) 20, 590
BsmFI GGGAC 2 cut(s) 68, 446
BsnI GGCC 5 cut(s) 203, 446, 738, 780, 966
Bso31I GGTCTC 1 cut(s) 20
Bsp120I GGGCCC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
Bsp19I CCATGG 1 cut(s) 310
BspACI CCGC 4 cut(s) 90, 199, 214, 615
BspANI GGCC 5 cut(s) 203, 446, 738, 780, 966
BspCNI CTCAG 4 cut(s) 52, 87, 133, 670
BspFNI CGCG 2 cut(s) 216, 615
BspLI GGNNCC 2 cut(s) 203, 579
BspMAI CTGCAG 1 cut(s) 10
BspOI GCTAGC 2 cut(s) 489, 632
BspPI GGATC 2 cut(s) 122, 618
BspTNI GGTCTC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 993
BsrFI RCCGGY 1 cut(s) 632
BsrI ACTGG 1 cut(s) 510
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 4 cut(s) 21, 265, 310, 568
BssMI GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
BssNAI GTATAC 1 cut(s) 680
BssT1I CCWWGG 2 cut(s) 21, 310
Bst1107I GTATAC 1 cut(s) 680
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 4 cut(s) 701, 772, 836, 868
BstC8I GCNNGC 5 cut(s) 201, 307, 487, 630, 634
BstDEI CTNAG 4 cut(s) 60, 74, 141, 657
BstDSI CCRYGG 2 cut(s) 265, 310
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 4 cut(s) 300, 454, 717, 1056
BstFNI CGCG 2 cut(s) 216, 615
BstKTI GATC 8 cut(s) 130, 196, 220, 300, 613, 697, 814, 1054
BstMAI GTCTC 2 cut(s) 20, 590
BstMBI GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 569
BstNSI RCATGY 2 cut(s) 309, 671
BstSCI CCNGG 1 cut(s) 567
BstSFI CTRYAG 2 cut(s) 6, 918
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 2 cut(s) 216, 615
BstV2I GAAGAC 1 cut(s) 317
BstZ17I GTATAC 1 cut(s) 680
BsuRI GGCC 5 cut(s) 203, 446, 738, 780, 966
BtgI CCRYGG 2 cut(s) 265, 310
BtgZI GCGATG 2 cut(s) 238, 916
BtsCI GGATG 4 cut(s) 300, 454, 717, 1056
BtsI GCAGTG 1 cut(s) 710
BtsIMutI CAGTG 4 cut(s) 499, 503, 710, 768
Cac8I GCNNGC 5 cut(s) 201, 307, 487, 630, 634
Cfr10I RCCGGY 1 cut(s) 632
Cfr13I GGNCC 4 cut(s) 201, 202, 779, 911
CseI GACGC 1 cut(s) 311
Csp6I GTAC 4 cut(s) 272, 390, 979, 1003
CspCI CAANNNNNGTGG 2 cut(s) 513, 548
CviAII CATG 6 cut(s) 306, 311, 607, 668, 908, 1036
CviQI GTAC 4 cut(s) 272, 390, 979, 1003
DdeI CTNAG 4 cut(s) 60, 74, 141, 657
DpnI GATC 8 cut(s) 129, 195, 219, 299, 612, 696, 813, 1053
DpnII GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
DraI TTTAAA 1 cut(s) 352
Eco130I CCWWGG 2 cut(s) 21, 310
Eco24I GRGCYC 1 cut(s) 205
Eco31I GGTCTC 1 cut(s) 20
Eco32I GATATC 1 cut(s) 891
Eco47I GGWCC 1 cut(s) 911
Eco57I CTGAAG 1 cut(s) 475
EcoNI CCTNNNNNAGG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 567
EcoRV GATATC 1 cut(s) 891
EcoT14I CCWWGG 2 cut(s) 21, 310
EcoT22I ATGCAT 1 cut(s) 858
EcoT38I GRGCYC 1 cut(s) 205
ErhI CCWWGG 2 cut(s) 21, 310
FaeI CATG 6 cut(s) 309, 314, 610, 671, 911, 1039
FalI AAGNNNNNCTT 2 cut(s) 1031, 1063
FaqI GGGAC 2 cut(s) 68, 446
FatI CATG 6 cut(s) 305, 310, 606, 667, 907, 1035
FauI CCCGC 1 cut(s) 192
FbaI TGATCA 2 cut(s) 193, 811
FblI GTMKAC 1 cut(s) 679
Fnu4HI GCNGC 2 cut(s) 6, 616
FokI GGATG 4 cut(s) 307, 441, 704, 1043
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 2 cut(s) 6, 616
FspBI CTAG 6 cut(s) 56, 486, 539, 629, 704, 1066
GluI GCNGC 2 cut(s) 6, 616
GsuI CTGGAG 1 cut(s) 527
HaeIII GGCC 5 cut(s) 203, 446, 738, 780, 966
HapII CCGG 1 cut(s) 633
HgaI GACGC 1 cut(s) 311
Hin1II CATG 6 cut(s) 309, 314, 610, 671, 911, 1039
HinfI GANTC 2 cut(s) 62, 823
HpaII CCGG 1 cut(s) 633
HphI GGTGA 1 cut(s) 57
Hpy166II GTNNAC 3 cut(s) 680, 802, 1044
Hpy188I TCNGA 2 cut(s) 562, 1061
Hpy188III TCNNGA 6 cut(s) 191, 329, 357, 371, 458, 721
Hpy8I GTNNAC 3 cut(s) 680, 802, 1044
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 8 cut(s) 96, 109, 283, 337, 792, 924, 956, 1057
HpyCH4III ACNGT 4 cut(s) 701, 772, 836, 868
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 6 cut(s) 8, 407, 671, 820, 856, 986
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 4 cut(s) 60, 74, 141, 657
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 6 cut(s) 309, 314, 610, 671, 911, 1039
KroI GCCGGC 1 cut(s) 632
KroNI GCCGGC 1 cut(s) 634
Ksp22I TGATCA 2 cut(s) 193, 811
Kzo9I GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
LmnI GCTCC 2 cut(s) 577, 976
LweI GCATC 2 cut(s) 54, 843
MaeI CTAG 6 cut(s) 56, 486, 539, 629, 704, 1066
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 3 cut(s) 37, 63, 168
MalI GATC 8 cut(s) 129, 195, 219, 299, 612, 696, 813, 1053
MboI GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
MboII GAAGA 5 cut(s) 241, 248, 317, 352, 413
MfeI CAATTG 1 cut(s) 623
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 5 cut(s) 228, 258, 583, 623, 637
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 7 cut(s) 40, 328, 423, 482, 490, 666, 749
Mph1103I ATGCAT 1 cut(s) 858
MroNI GCCGGC 1 cut(s) 632
MseI TTAA 5 cut(s) 261, 351, 441, 774, 870
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 1 cut(s) 633
MspR9I CCNGG 1 cut(s) 569
MunI CAATTG 1 cut(s) 623
MvaI CCWGG 1 cut(s) 569
MvnI CGCG 2 cut(s) 216, 615
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 634
NcoI CCATGG 1 cut(s) 310
NdeII GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
NgoMIV GCCGGC 1 cut(s) 632
NheI GCTAGC 2 cut(s) 485, 628
NlaIII CATG 6 cut(s) 309, 314, 610, 671, 911, 1039
NlaIV GGNNCC 2 cut(s) 203, 579
NmuCI GTSAC 3 cut(s) 37, 63, 168
NsiI ATGCAT 1 cut(s) 858
NspI RCATGY 2 cut(s) 309, 671
PaeI GCATGC 1 cut(s) 309
PdiI GCCGGC 1 cut(s) 634
PfeI GAWTC 1 cut(s) 823
PkrI GCNGC 2 cut(s) 7, 617
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PsiI TTATAA 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 567
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 2 cut(s) 203, 579
PspOMI GGGCCC 1 cut(s) 201
PspPI GGNCC 4 cut(s) 201, 202, 779, 911
PstI CTGCAG 1 cut(s) 10
RsaI GTAC 4 cut(s) 273, 391, 980, 1004
RsaNI GTAC 4 cut(s) 272, 390, 979, 1003
SaqAI TTAA 5 cut(s) 261, 351, 441, 774, 870
SatI GCNGC 2 cut(s) 6, 616
Sau3AI GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
Sau96I GGNCC 4 cut(s) 201, 202, 779, 911
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 569
SduI GDGCHC 1 cut(s) 205
SfaNI GCATC 2 cut(s) 54, 843
SfcI CTRYAG 2 cut(s) 6, 918
SinI GGWCC 1 cut(s) 911
SmlI CTYRAG 2 cut(s) 15, 371
SmoI CTYRAG 2 cut(s) 15, 371
SphI GCATGC 1 cut(s) 309
Sse9I AATT 5 cut(s) 228, 258, 583, 623, 637
SsiI CCGC 4 cut(s) 90, 199, 214, 615
SspMI CTAG 6 cut(s) 56, 486, 539, 629, 704, 1066
StyD4I CCNGG 1 cut(s) 567
StyI CCWWGG 2 cut(s) 21, 310
TaaI ACNGT 4 cut(s) 701, 772, 836, 868
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 300, 747, 1050
TasI AATT 5 cut(s) 228, 258, 583, 623, 637
TatI WGTACW 1 cut(s) 1002
TauI GCSGC 1 cut(s) 618
TfiI GAWTC 1 cut(s) 823
Tru1I TTAA 5 cut(s) 261, 351, 441, 774, 870
Tru9I TTAA 5 cut(s) 261, 351, 441, 774, 870
TscAI CASTG 4 cut(s) 499, 510, 717, 775
TseFI GTSAC 3 cut(s) 37, 63, 168
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 3 cut(s) 37, 63, 168
TspDTI ATGAA 7 cut(s) 135, 241, 302, 617, 746, 1004, 1052
TspGWI ACGGA 2 cut(s) 282, 771
TspRI CASTG 4 cut(s) 499, 510, 717, 775
VpaK11BI GGWCC 1 cut(s) 911
XagI CCTNNNNNAGG 1 cut(s) 287
XapI RAATTY 1 cut(s) 228
XceI RCATGY 2 cut(s) 309, 671
XmiI GTMKAC 1 cut(s) 679
XspI CTAG 6 cut(s) 56, 486, 539, 629, 704, 1066
Zsp2I ATGCAT 1 cut(s) 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.