Rorug07G0092600

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000481
Physical Location & Seq
Reverse (-)
7252488 .. 7261397
8910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0092600.1

Sequence Viewer

Length: 2850 bp
ATGCCATTTGAAGTAATGGATCAAAGGGGTGTATCCGTCTCTTCCCACTACTTTGAAGAAATTCCTTTTCCTTCCGAGAGACAAGTTGGATTTCAGAAGCTGAAAACCATGCCTGATCACCAAGTGGGAGTAGATAGAACAGTGCCGACAGCTGGCAGCATATTTGATCCTTCATTACCCTCAAAAAGGTTTTTACCAATTGGGGCACAATCAGTGGATTACTTTGATATGCCACAATCCAATCTGGCTGGGGAGCGCACAGAAAGGCTAAGCATTACTGGAGGAGTTGCCAATACATCTAAGGCCTCGTGGAAACCTATGAATCATCATCCAAAGTTGTGGTCAGACTTGCCCACACGGCCAACATCCCATAGCTTGGTTGGAAGCAAAACTGCTATTAATGGTGCTCAGCATGAAAGCAGTCTGTTCTCAAGCTCATTGTCTGAAATTTTTACTAGAAAATTGAGATTGCTAAAGGGTGATTTTGTATCTCATCAATCTACAAATACTGTTGCTTCCCAACATGAGGAAGAGCCCTTTGAATCGCTTGAAGAAATGGAAGCACAAACCATTGGAAATCTCCTTCCTGATGAAAATGATTTGTTTTCTGGCATGATAGATGGTCCGGGTAAAATTGTGCATGGTAGTAAAGGGGACGAATTGGAAGATTTTGATCTTTTTAGCAGTGGTGGCGGCATGGAATTAGAAGGAGATGATCAAGGGGGTGGTAATTTTTCACTTGTGGGTGAACACCCCTATGGCGAGCACCCTTCTAGAACACTTTTTGTTCGAAATATTAATAGCAATGTTGAAGATTTGGAATTGAAGGATCTTTTTGAGCAATATGGAGATATCCGAACACTTTACACAGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTATTATGATATAAGGGCTGCCCAAAAAGCGATAAGAGCACTACAGAGTAAGCCACTGAGGCGTAGGAAGCTTGACATACACTATTCGATACCCAAGGACAACCCTTCTGATAAAGATGTTAACCAAGGAACACTTGAGGTATACAATGTTGATTCTTCTGTTTCTGATGATGAGCTTACTAAACTTTTCGAATCTTATGGGGAAATCAAAGAGATCCGCGAGGCTCCAAACAAGAGTCATAACAAGTTGATAGAATTTTATGATGTTAGAGCTGCAGAAGCTGCTCTTCATGCATTGAATACGAGTGAGATTGGTGGGAAGCAGATCAAGCTTGAACCCAGCCATCCAGGGGTTGCCAGAATGGGTTTCGGTCAAGGTTCCAAGCAGGAGCAAGATGAATTTAATATTTGTCATAGTCCATCCGACAACTTATCAGCAGGATGCAAGGCAACCCTTCATCCTGGAATGGCTAATGAATCTAACCTGGGATTACATTCTTCAATTCGATCACCTTCCAATGCATTTATGGGAAATGCTTTAGCGCATCTGAGTTCAAGTGTTCCGCGTACCTTGCCCTCTCCGATGAGAGTGGTGTCTGCGGACAAAAACTTTTGCCTTCCTGATTCCAATCACTCTCTGAATGAAATTAAGTTTGGTAACCAGTGCGTTCCCAATTTCCATCCGCATTCCCTCCCTGAGTATCATGACAGTTTAGCACATGGTATCACATCCAACTCCAGTGGAGTGACTGGCAATGTGGGCCTTAGAATGACAGAAGGAACCGACAGGAGGCACATTCGTGAAATGAATGCAAATGGGCACCTGATGGAACTGAACGGAGGAGGAGCTTTTGCATCTTCTGGAAATGGGAGTGCTGGGGTTCGTGGACATCATTATGTTTCCAATTCTTATCAGCAGCATCCTTCAAGTCCCATGATGTGGCAGAATTCACCATCATTTATCAATGGTCCTCATGCTCATCGCTTTCCACAAATGCCTGGCTTCCCTAGAACACCTCCTCACATGCTGAATGGGACATCACCTGTCCGCCACCATGTTGGATCAGCACCAGCAGTTAACCCTTCCCTTTGGGAAAGACATGCATTTTCAGGACAGTCTCCTGACACTTCTAGTCTTCACTTGGGATCTCCTAGCTTCGCCTGTTTTCCCAGTAGTCCCCAGTTGCATCCTATGGAAGTTCCATCACGCAACATCTTTTCTCTTGTTGGTGGAAATTGCTCAGACATGAATACAAGTACCCGGCAACGCTCTTCGCAGGAGATCTGCCACATGTTTCCTGGGAGGAATTCAATGATGTCGATGCCTACCTCTTTTGGTTCACCAAATGAACGTGTCAGAAATCTATCTCACCGTAGAAGTGAAGCAAACTCTCATAATGCTGATAGGAAACAATATGAACTTGATATTGAGCGCATATTGCGTGGGGATGACAATCGAACCACACTGATGATAAAGAACATTCCCAACAAGTATACTTCAAAGATGCTGCTTGCAGTAATTGATGAGAACTGTCGAGGAATATATGACTTTATTTATTTGCCAATTGACTTCAAGAACAAATGCAATGTGGGATATGCATTCATCAACATGATTGATCCTCAACAGATTGTTCCATTCTATAAGGCATTCAATGGCAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTTGCAACACTTGCATATGCTCGTATTCAGGGAAAAGCTGCCCTTATTGCCCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGGTGTCGCCCTATACTCTTCCACACAGATGGACCAAATGCTGGGGACCCGGAACCCTTTCCAATGGGCACCCACATCCGATCAAGACCAGGAAGATCTCGAACCAGTGGCTATGAGGAAAGCCATAACCAATGGAGCCCATCTTCATCTGCAAATGGAGAGGAAAGTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

949

Amino Acids

105.13

Weight (kDa)

6.45

Isoelectric Point (pI)

54.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 261 - 325 2.9e-11 RNA recognition motif
RRM_1 PF00076 348 - 411 2.3e-08 RNA recognition motif
RRM_2 PF04059 787 - 883 7e-54 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000481)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20420 FvH4_5g20421 FvH4_5g20430 FvH4_5g20431 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g33280
malus_domestica MD03G1140300.v1.1 MD03G1140400.v1.1 MD11G1171500.v1.1
prunus_persica Prupe.8G112300_v2.0.a1
pyrus_communis pycom03g09520 pycom11g13270
rosa_chinensis RchiOBHm_Chr2g0142431 RchiOBHm_Chr5g0068661 RchiOBHm_Chr6g0271401 RchiOBHm_Chr7g0205561 RchiOBHm_Chr7g0205581 RchiOBHm_Chr7g0205721 RchiOBHm_Chr7g0205741
rosa_laevigata RLG00000003357 RLG00000003358 RLG00000003359 RLG00000003363 RLG00000009087 RLG00000019958 RLG00000035989
rosa_multiflora Rmu_sc0000076.1_g000053 Rmu_sc0000076.1_g000054 Rmu_sc0000076.1_g000055 Rmu_sc0001211.1_g000022 Rmu_sc0001679.1_g000017 Rmu_sc0008518.1_g000018 Rmu_sc0008518.1_g000022 Rmu_sc0008518.1_g000024 Rmu_ssc0000482.1_g000004
rosa_roxburghii Rroxscaffold_1G00012230 Rroxscaffold_2G00102620 Rroxscaffold_3G00252010 Rroxscaffold_3G00252020 Rroxscaffold_3G00252030 Rroxscaffold_3G00252050 Rroxscaffold_7G00197030
rosa_rugosa Rorug02G0372500 Rorug02G0372600 Rorug06G0060800 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092700 Rorug07G0092800
rosa_samantha Rh2AG424300 Rh2BG433900 Rh2CG410900 Rh2DG443900 Rh5AG449900 Rh5DG481500 Rh5DG481700 Rh6AG180000 Rh6BG183200 Rh6CG179900 Rh6DG171700 Rh7AG222800 Rh7AG223900 Rh7AG224200 Rh7AG224300 Rh7BG219100 Rh7BG219200 Rh7BG219300 Rh7BG219500 Rh7CG235600 Rh7CG237400 Rh7CG237700 Rh7CG237800 Rh7DG229400 Rh7DG229600 Rh7DG231000
rosa_wichuraiana Rw2G034750 Rw5G042000 Rw6G015460 Rw7G019220 Rw7G019310 Rw7G019320 Rw7G019330 Rw7G019340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1722, 2744
AccB7I CCANNNNNTGG 3 cut(s) 376, 1842, 2717
AccI GTMKAC 2 cut(s) 1044, 2396
AccII CGCG 2 cut(s) 1122, 1468
AciI CCGC 6 cut(s) 693, 1120, 1466, 1502, 1586, 1951
AclWI GGATC 7 cut(s) 27, 161, 837, 1111, 1972, 2056, 2513
AcoI YGGCCR 1 cut(s) 359
AcsI RAATTY 7 cut(s) 60, 447, 1157, 1301, 1849, 2209, 2650
AdeI CACNNNGTG 1 cut(s) 124
AfaI GTAC 2 cut(s) 1471, 2161
AfiI CCNNNNNNNGG 8 cut(s) 152, 186, 376, 526, 1252, 1692, 1842, 2717
AflIII ACRYGT 2 cut(s) 2193, 2254
AjnI CCWGG 6 cut(s) 1249, 1363, 1386, 1900, 2200, 2764
AjuI GAANNNNNNNTTGG 2 cut(s) 1539, 1571
AleI CACNNNNGTG 1 cut(s) 1701
Alw21I GWGCWC 3 cut(s) 409, 768, 943
Alw26I GTCTC 3 cut(s) 43, 73, 2025
AlwI GGATC 7 cut(s) 27, 161, 837, 1111, 1972, 2056, 2513
AlwNI CAGNNNCTG 2 cut(s) 100, 1184
AoxI GGCC 3 cut(s) 303, 359, 1663
ApeKI GCWGC 7 cut(s) 156, 920, 1175, 1184, 1819, 2410, 2627
ApoI RAATTY 7 cut(s) 60, 447, 1157, 1301, 1849, 2209, 2650
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AseI ATTAAT 2 cut(s) 399, 798
Asp700I GAANNNNTTC 2 cut(s) 60, 2733
AspLEI GCGC 3 cut(s) 258, 1447, 2337
AspS9I GGNCC 5 cut(s) 623, 1663, 1871, 2708, 2722
AsuC2I CCSGG 3 cut(s) 627, 2164, 2726
AsuHPI GGTGA 8 cut(s) 110, 491, 758, 1404, 1845, 1935, 2235, 2264
AsuII TTCGAA 2 cut(s) 790, 1092
AvaII GGWCC 4 cut(s) 623, 1871, 2708, 2722
BaeGI GKGCMC 3 cut(s) 208, 1725, 2747
BanI GGYRCC 2 cut(s) 1722, 2744
BanII GRGCYC 2 cut(s) 537, 2816
BauI CACGAG 1 cut(s) 307
BbsI GAAGAC 1 cut(s) 2030
Bbv12I GWGCWC 3 cut(s) 409, 768, 943
BbvI GCAGC 7 cut(s) 168, 907, 1162, 1171, 1831, 2397, 2614
BccI CCATC 9 cut(s) 614, 1254, 1330, 1590, 1723, 1864, 2113, 2699, 2824
BceAI ACGGC 1 cut(s) 374
BciT130I CCWGG 6 cut(s) 1251, 1365, 1388, 1902, 2202, 2766
BciVI GTATCC 1 cut(s) 43
BclI TGATCA 2 cut(s) 115, 715
BcnI CCSGG 3 cut(s) 627, 2164, 2726
BcoDI GTCTC 3 cut(s) 43, 73, 2025
BfaI CTAG 6 cut(s) 456, 774, 1911, 2034, 2055, 2848
BfmI CTRYAG 2 cut(s) 944, 1176
BfuI GTATCC 1 cut(s) 43
BglI GCCNNNNNGGC 2 cut(s) 358, 961
BglII AGATCT 2 cut(s) 2184, 2771
BisI GCNGC 8 cut(s) 157, 694, 921, 1176, 1185, 1820, 2411, 2628
BlpI GCTNAGC 2 cut(s) 269, 408
BlsI GCNGC 8 cut(s) 158, 695, 922, 1177, 1186, 1821, 2412, 2629
Bme1390I CCNGG 9 cut(s) 627, 1251, 1365, 1388, 1902, 2164, 2202, 2726, 2766
Bme18I GGWCC 4 cut(s) 623, 1871, 2708, 2722
BmgT120I GGNCC 5 cut(s) 623, 1663, 1871, 2708, 2722
BmiI GGNNCC 9 cut(s) 1128, 1282, 1684, 1724, 2723, 2724, 2730, 2746, 2813
BmrFI CCNGG 9 cut(s) 627, 1251, 1365, 1388, 1902, 2164, 2202, 2726, 2766
BmrI ACTGGG 2 cut(s) 2067, 2077
BmsI GCATC 8 cut(s) 889, 1334, 1456, 1766, 1831, 2098, 2214, 2397
BmuI ACTGGG 2 cut(s) 2067, 2077
BpiI GAAGAC 1 cut(s) 2030
BpmI CTGGAG 2 cut(s) 300, 1624
Bpu1102I GCTNAGC 2 cut(s) 269, 408
Bpu14I TTCGAA 2 cut(s) 790, 1092
BpuEI CTTGAG 2 cut(s) 415, 1058
BpuMI CCSGG 3 cut(s) 627, 2164, 2726
BsaBI GATNNNNATC 3 cut(s) 672, 1530, 2355
BsaJI CCNNGG 5 cut(s) 996, 1027, 1250, 1387, 2201
Bsc4I CCNNNNNNNGG 8 cut(s) 152, 186, 376, 526, 1252, 1692, 1842, 2717
Bse1I ACTGG 7 cut(s) 283, 1564, 1641, 1657, 2073, 2083, 2781
Bse3DI GCAATG 3 cut(s) 811, 1663, 2494
Bse8I GATNNNNATC 3 cut(s) 672, 1530, 2355
BseBI CCWGG 6 cut(s) 1251, 1365, 1388, 1902, 2202, 2766
BseDI CCNNGG 5 cut(s) 996, 1027, 1250, 1387, 2201
BseJI GATNNNNATC 3 cut(s) 672, 1530, 2355
BseLI CCNNNNNNNGG 8 cut(s) 152, 186, 376, 526, 1252, 1692, 1842, 2717
BseMI GCAATG 3 cut(s) 811, 1663, 2494
BseMII CTCAG 5 cut(s) 422, 950, 1442, 1590, 2157
BseNI ACTGG 7 cut(s) 283, 1564, 1641, 1657, 2073, 2083, 2781
BseRI GAGGAG 4 cut(s) 297, 1758, 1761, 1911
BseSI GKGCMC 3 cut(s) 208, 1725, 2747
BseXI GCAGC 7 cut(s) 168, 907, 1162, 1171, 1831, 2397, 2614
BseYI CCCAGC 4 cut(s) 248, 1241, 1778, 2717
Bsh1236I CGCG 2 cut(s) 1122, 1468
BshFI GGCC 3 cut(s) 305, 361, 1665
BshNI GGYRCC 2 cut(s) 1722, 2744
BsiHKAI GWGCWC 3 cut(s) 409, 768, 943
BsiSI CCGG 3 cut(s) 626, 2164, 2726
BslFI GGGAC 5 cut(s) 668, 1818, 1951, 2064, 2735
BslI CCNNNNNNNGG 8 cut(s) 152, 186, 376, 526, 1252, 1692, 1842, 2717
BsmAI GTCTC 3 cut(s) 43, 73, 2025
BsmBI CGTCTC 1 cut(s) 43
BsmFI GGGAC 5 cut(s) 668, 1818, 1951, 2064, 2735
BsmI GAATGC 4 cut(s) 1588, 1717, 2501, 2549
BsnI GGCC 3 cut(s) 305, 361, 1665
Bsp119I TTCGAA 2 cut(s) 790, 1092
Bsp1286I GDGCHC 8 cut(s) 208, 409, 537, 768, 943, 1725, 2747, 2816
Bsp1720I GCTNAGC 2 cut(s) 269, 408
BspACI CCGC 6 cut(s) 693, 1120, 1466, 1502, 1586, 1951
BspANI GGCC 3 cut(s) 305, 361, 1665
BspCNI CTCAG 5 cut(s) 421, 951, 1443, 1591, 2156
BspFNI CGCG 2 cut(s) 1122, 1468
BspHI TCATGA 1 cut(s) 1606
BspLI GGNNCC 9 cut(s) 1128, 1282, 1684, 1724, 2723, 2724, 2730, 2746, 2813
BspMAI CTGCAG 1 cut(s) 1180
BspPI GGATC 7 cut(s) 27, 161, 837, 1111, 1972, 2056, 2513
BspQI GCTCTTC 3 cut(s) 525, 1194, 2179
BspT104I TTCGAA 2 cut(s) 790, 1092
BspT107I GGYRCC 2 cut(s) 1722, 2744
BsrDI GCAATG 3 cut(s) 811, 1663, 2494
BsrI ACTGG 7 cut(s) 283, 1564, 1641, 1657, 2073, 2083, 2781
BssECI CCNNGG 5 cut(s) 996, 1027, 1250, 1387, 2201
BssNAI GTATAC 2 cut(s) 1045, 2397
BssSI CACGAG 1 cut(s) 307
BssT1I CCWWGG 2 cut(s) 996, 1027
Bst1107I GTATAC 2 cut(s) 1045, 2397
Bst2BI CACGAG 1 cut(s) 307
Bst2UI CCWGG 6 cut(s) 1251, 1365, 1388, 1902, 2202, 2766
Bst4CI ACNGT 8 cut(s) 142, 511, 1613, 2019, 2276, 2435, 2582, 2679
Bst6I CTCTTC 5 cut(s) 46, 525, 1194, 2179, 2699
BstAPI GCANNNNNTGC 2 cut(s) 1184, 2600
BstBI TTCGAA 2 cut(s) 790, 1092
BstC8I GCNNGC 5 cut(s) 154, 764, 874, 878, 2415
BstDEI CTNAG 8 cut(s) 269, 300, 408, 959, 1451, 1599, 1667, 2143
BstEII GGTNACC 1 cut(s) 1559
BstENI CCTNNNNNAGG 1 cut(s) 184
BstFNI CGCG 2 cut(s) 1122, 1468
BstHHI GCGC 3 cut(s) 258, 1447, 2337
BstMAI GTCTC 3 cut(s) 43, 73, 2025
BstNI CCWGG 6 cut(s) 1251, 1365, 1388, 1902, 2202, 2766
BstNSI RCATGY 3 cut(s) 1930, 2006, 2197
BstPI GGTNACC 1 cut(s) 1559
BstSCI CCNGG 9 cut(s) 625, 1249, 1363, 1386, 1900, 2162, 2200, 2724, 2764
BstSFI CTRYAG 2 cut(s) 944, 1176
BstSLI GKGCMC 3 cut(s) 208, 1725, 2747
BstUI CGCG 2 cut(s) 1122, 1468
BstV1I GCAGC 7 cut(s) 168, 907, 1162, 1171, 1831, 2397, 2614
BstV2I GAAGAC 1 cut(s) 2030
BstX2I RGATCY 5 cut(s) 829, 1116, 2048, 2184, 2771
BstXI CCANNNNNNTGG 3 cut(s) 339, 1961, 2705
BstYI RGATCY 5 cut(s) 829, 1116, 2048, 2184, 2771
BstZ17I GTATAC 2 cut(s) 1045, 2397
BsuI GTATCC 1 cut(s) 43
BsuRI GGCC 3 cut(s) 305, 361, 1665
BtgZI GCGATG 1 cut(s) 1868
BtsI GCAGTG 1 cut(s) 691
BtsIMutI CAGTG 9 cut(s) 147, 219, 691, 956, 1571, 1648, 2366, 2587, 2788
Cac8I GCNNGC 5 cut(s) 154, 764, 874, 878, 2415
CaiI CAGNNNCTG 2 cut(s) 100, 1184
CciI TCATGA 1 cut(s) 1606
CfoI GCGC 3 cut(s) 258, 1447, 2337
Cfr13I GGNCC 5 cut(s) 623, 1663, 1871, 2708, 2722
Csp6I GTAC 2 cut(s) 1470, 2160
CspCI CAANNNNNGTGG 4 cut(s) 865, 900, 1624, 1659
CviQI GTAC 2 cut(s) 1470, 2160
DdeI CTNAG 8 cut(s) 269, 300, 408, 959, 1451, 1599, 1667, 2143
DraIII CACNNNGTG 1 cut(s) 124
EaeI YGGCCR 1 cut(s) 359
Eam1104I CTCTTC 5 cut(s) 46, 525, 1194, 2179, 2699
EarI CTCTTC 5 cut(s) 46, 525, 1194, 2179, 2699
EciI GGCGGA 1 cut(s) 1940
Eco130I CCWWGG 2 cut(s) 996, 1027
Eco147I AGGCCT 1 cut(s) 305
Eco24I GRGCYC 2 cut(s) 537, 2816
Eco32I GATATC 1 cut(s) 853
Eco47I GGWCC 4 cut(s) 623, 1871, 2708, 2722
Eco91I GGTNACC 1 cut(s) 1559
EcoNI CCTNNNNNAGG 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 2722
EcoO65I GGTNACC 1 cut(s) 1559
EcoRI GAATTC 3 cut(s) 1849, 2209, 2650
EcoRII CCWGG 6 cut(s) 1249, 1363, 1386, 1900, 2200, 2764
EcoRV GATATC 1 cut(s) 853
EcoT14I CCWWGG 2 cut(s) 996, 1027
EcoT22I ATGCAT 4 cut(s) 1198, 1426, 2008, 2503
EcoT38I GRGCYC 2 cut(s) 537, 2816
ErhI CCWWGG 2 cut(s) 996, 1027
Esp3I CGTCTC 1 cut(s) 43
FalI AAGNNNNNCTT 6 cut(s) 1020, 1052, 1173, 1205, 2616, 2648
FaqI GGGAC 5 cut(s) 668, 1818, 1951, 2064, 2735
FauNDI CATATG 1 cut(s) 2605
FbaI TGATCA 2 cut(s) 115, 715
FblI GTMKAC 2 cut(s) 1044, 2396
Fnu4HI GCNGC 8 cut(s) 157, 694, 921, 1176, 1185, 1820, 2411, 2628
FriOI GRGCYC 2 cut(s) 537, 2816
Fsp4HI GCNGC 8 cut(s) 157, 694, 921, 1176, 1185, 1820, 2411, 2628
FspBI CTAG 6 cut(s) 456, 774, 1911, 2034, 2055, 2848
GlaI GCGC 3 cut(s) 257, 1446, 2336
GluI GCNGC 8 cut(s) 157, 694, 921, 1176, 1185, 1820, 2411, 2628
GsaI CCCAGC 4 cut(s) 252, 1245, 1782, 2721
GsuI CTGGAG 2 cut(s) 300, 1624
HaeIII GGCC 3 cut(s) 305, 361, 1665
HapII CCGG 3 cut(s) 626, 2164, 2726
HhaI GCGC 3 cut(s) 258, 1447, 2337
Hin6I GCGC 3 cut(s) 256, 1445, 2335
HinP1I GCGC 3 cut(s) 256, 1445, 2335
HincII GTYRAC 2 cut(s) 1024, 1981
HindII GTYRAC 2 cut(s) 1024, 1981
HindIII AAGCTT 3 cut(s) 971, 1232, 2656
HinfI GANTC 7 cut(s) 322, 542, 1055, 1094, 1138, 1379, 1526
HpaI GTTAAC 2 cut(s) 1024, 1981
HpaII CCGG 3 cut(s) 626, 2164, 2726
HphI GGTGA 8 cut(s) 110, 491, 758, 1404, 1845, 1935, 2235, 2264
Hpy166II GTNNAC 7 cut(s) 749, 1024, 1045, 1790, 1981, 2243, 2397
Hpy8I GTNNAC 7 cut(s) 749, 1024, 1045, 1790, 1981, 2243, 2397
HpyCH4III ACNGT 8 cut(s) 142, 511, 1613, 2019, 2276, 2435, 2582, 2679
HpyCH4IV ACGT 1 cut(s) 2254
HpyF3I CTNAG 8 cut(s) 269, 300, 408, 959, 1451, 1599, 1667, 2143
HpySE526I ACGT 1 cut(s) 2254
HspAI GCGC 3 cut(s) 256, 1445, 2335
KflI GGGWCCC 1 cut(s) 2722
Ksp22I TGATCA 2 cut(s) 115, 715
KspAI GTTAAC 2 cut(s) 1024, 1981
LguI GCTCTTC 3 cut(s) 525, 1194, 2179
LmnI GCTCC 5 cut(s) 253, 1132, 1291, 1748, 2811
Lsp1109I GCAGC 7 cut(s) 168, 907, 1162, 1171, 1831, 2397, 2614
LweI GCATC 8 cut(s) 889, 1334, 1456, 1766, 1831, 2098, 2214, 2397
MaeI CTAG 6 cut(s) 456, 774, 1911, 2034, 2055, 2848
MaeII ACGT 1 cut(s) 2254
MaeIII GTNAC 2 cut(s) 1559, 1648
MfeI CAATTG 2 cut(s) 198, 2466
MflI RGATCY 5 cut(s) 829, 1116, 2048, 2184, 2771
MhlI GDGCHC 8 cut(s) 208, 409, 537, 768, 943, 1725, 2747, 2816
MlyI GAGTC 1 cut(s) 1147
MmeI TCCRAC 5 cut(s) 67, 361, 1350, 1659, 1942
Mph1103I ATGCAT 4 cut(s) 1198, 1426, 2008, 2503
MroXI GAANNNNTTC 2 cut(s) 60, 2733
MseI TTAA 7 cut(s) 399, 798, 1023, 1305, 1551, 1980, 2660
MslI CAYNNNNRTG 6 cut(s) 756, 1701, 1797, 2369, 2510, 2703
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 3 cut(s) 626, 2164, 2726
MspR9I CCNGG 9 cut(s) 627, 1251, 1365, 1388, 1902, 2164, 2202, 2726, 2766
MunI CAATTG 2 cut(s) 198, 2466
Mva1269I GAATGC 4 cut(s) 1588, 1717, 2501, 2549
MvaI CCWGG 6 cut(s) 1251, 1365, 1388, 1902, 2202, 2766
MvnI CGCG 2 cut(s) 1122, 1468
NciI CCSGG 3 cut(s) 627, 2164, 2726
NdeI CATATG 1 cut(s) 2605
NlaIV GGNNCC 9 cut(s) 1128, 1282, 1684, 1724, 2723, 2724, 2730, 2746, 2813
NmuCI GTSAC 1 cut(s) 1648
NsiI ATGCAT 4 cut(s) 1198, 1426, 2008, 2503
NspI RCATGY 3 cut(s) 1930, 2006, 2197
NspV TTCGAA 2 cut(s) 790, 1092
OliI CACNNNNGTG 1 cut(s) 1701
PagI TCATGA 1 cut(s) 1606
PceI AGGCCT 1 cut(s) 305
PciI ACATGT 1 cut(s) 2193
PciSI GCTCTTC 3 cut(s) 525, 1194, 2179
PctI GAATGC 4 cut(s) 1588, 1717, 2501, 2549
PdmI GAANNNNTTC 2 cut(s) 60, 2733
PfeI GAWTC 6 cut(s) 322, 542, 1055, 1094, 1379, 1526
PflMI CCANNNNNTGG 3 cut(s) 376, 1842, 2717
PfoI TCCNGGA 1 cut(s) 1363
PkrI GCNGC 8 cut(s) 158, 695, 922, 1177, 1186, 1821, 2412, 2629
PleI GAGTC 1 cut(s) 1146
PpsI GAGTC 1 cut(s) 1146
PpuMI RGGWCCY 1 cut(s) 2722
PscI ACATGT 1 cut(s) 2193
PshBI ATTAAT 2 cut(s) 399, 798
Psp5II RGGWCCY 1 cut(s) 2722
Psp6I CCWGG 6 cut(s) 1249, 1363, 1386, 1900, 2200, 2764
PspEI GGTNACC 1 cut(s) 1559
PspFI CCCAGC 4 cut(s) 248, 1241, 1778, 2717
PspGI CCWGG 6 cut(s) 1249, 1363, 1386, 1900, 2200, 2764
PspN4I GGNNCC 9 cut(s) 1128, 1282, 1684, 1724, 2723, 2724, 2730, 2746, 2813
PspPI GGNCC 5 cut(s) 623, 1663, 1871, 2708, 2722
PspPPI RGGWCCY 1 cut(s) 2722
PstI CTGCAG 1 cut(s) 1180
PstNI CAGNNNCTG 2 cut(s) 100, 1184
PsuI RGATCY 5 cut(s) 829, 1116, 2048, 2184, 2771
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 2 cut(s) 1471, 2161
RsaNI GTAC 2 cut(s) 1470, 2160
RseI CAYNNNNRTG 6 cut(s) 756, 1701, 1797, 2369, 2510, 2703
SapI GCTCTTC 3 cut(s) 525, 1194, 2179
SaqAI TTAA 7 cut(s) 399, 798, 1023, 1305, 1551, 1980, 2660
SatI GCNGC 8 cut(s) 157, 694, 921, 1176, 1185, 1820, 2411, 2628
Sau96I GGNCC 5 cut(s) 623, 1663, 1871, 2708, 2722
SchI GAGTC 1 cut(s) 1147
ScrFI CCNGG 9 cut(s) 627, 1251, 1365, 1388, 1902, 2164, 2202, 2726, 2766
SduI GDGCHC 8 cut(s) 208, 409, 537, 768, 943, 1725, 2747, 2816
SfaNI GCATC 8 cut(s) 889, 1334, 1456, 1766, 1831, 2098, 2214, 2397
SfcI CTRYAG 2 cut(s) 944, 1176
SfuI TTCGAA 2 cut(s) 790, 1092
SinI GGWCC 4 cut(s) 623, 1871, 2708, 2722
SmiMI CAYNNNNRTG 6 cut(s) 756, 1701, 1797, 2369, 2510, 2703
SmlI CTYRAG 2 cut(s) 430, 1037
SmoI CTYRAG 2 cut(s) 430, 1037
SseBI AGGCCT 1 cut(s) 305
SsiI CCGC 6 cut(s) 693, 1120, 1466, 1502, 1586, 1951
SspI AATATT 2 cut(s) 796, 1309
SspMI CTAG 6 cut(s) 456, 774, 1911, 2034, 2055, 2848
StuI AGGCCT 1 cut(s) 305
StyD4I CCNGG 9 cut(s) 625, 1249, 1363, 1386, 1900, 2162, 2200, 2724, 2764
StyI CCWWGG 2 cut(s) 996, 1027
TaaI ACNGT 8 cut(s) 142, 511, 1613, 2019, 2276, 2435, 2582, 2679
TaiI ACGT 1 cut(s) 2257
TaqI TCGA 8 cut(s) 790, 989, 1092, 1408, 2222, 2359, 2437, 2776
TaqII GACCGA 1 cut(s) 1262
TauI GCSGC 1 cut(s) 696
TfiI GAWTC 6 cut(s) 322, 542, 1055, 1094, 1379, 1526
Tru1I TTAA 7 cut(s) 399, 798, 1023, 1305, 1551, 1980, 2660
Tru9I TTAA 7 cut(s) 399, 798, 1023, 1305, 1551, 1980, 2660
TscAI CASTG 9 cut(s) 147, 219, 691, 963, 1571, 1648, 2373, 2587, 2788
TseFI GTSAC 1 cut(s) 1648
TseI GCWGC 7 cut(s) 156, 920, 1175, 1184, 1819, 2410, 2627
Tsp45I GTSAC 1 cut(s) 1648
TspGWI ACGGA 2 cut(s) 25, 1755
TspRI CASTG 9 cut(s) 147, 219, 691, 963, 1571, 1648, 2373, 2587, 2788
Van91I CCANNNNNTGG 3 cut(s) 376, 1842, 2717
VpaK11BI GGWCC 4 cut(s) 623, 1871, 2708, 2722
VspI ATTAAT 2 cut(s) 399, 798
XagI CCTNNNNNAGG 1 cut(s) 184
XapI RAATTY 7 cut(s) 60, 447, 1157, 1301, 1849, 2209, 2650
XbaI TCTAGA 1 cut(s) 773
XceI RCATGY 3 cut(s) 1930, 2006, 2197
XcmI CCANNNNNNNNNTGG 3 cut(s) 377, 1426, 2198
XmiI GTMKAC 2 cut(s) 1044, 2396
XmnI GAANNNNTTC 2 cut(s) 60, 2733
XspI CTAG 6 cut(s) 456, 774, 1911, 2034, 2055, 2848
Zsp2I ATGCAT 4 cut(s) 1198, 1426, 2008, 2503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.