Rorug06G0060800

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
8158705 .. 8158994
290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0060800.1

Sequence Viewer

Length: 195 bp
ATGAGTAGATGTAACTCTGCAGGAAGAACAACTGTTGAGCAGAGCAAGTTGTTGGAGGATTACTACAGAAAACAGAACAAACTCATCGATTTTCATGTGAAAGGTGCCCCCGGAGAAACCTGGAAGGGGCTGCTGGCTGCATTGCATCTCCAGCATATAAATGCTGTCAGTTCTTTCCAGAAGCTAACTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

64

Amino Acids

7.2

Weight (kDa)

9.58

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000481)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20420 FvH4_5g20421 FvH4_5g20430 FvH4_5g20431 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g20432 FvH4_5g33280
malus_domestica MD03G1140300.v1.1 MD03G1140400.v1.1 MD11G1171500.v1.1
prunus_persica Prupe.8G112300_v2.0.a1
pyrus_communis pycom03g09520 pycom11g13270
rosa_chinensis RchiOBHm_Chr2g0142431 RchiOBHm_Chr5g0068661 RchiOBHm_Chr6g0271401 RchiOBHm_Chr7g0205561 RchiOBHm_Chr7g0205581 RchiOBHm_Chr7g0205721 RchiOBHm_Chr7g0205741
rosa_laevigata RLG00000003357 RLG00000003358 RLG00000003359 RLG00000003363 RLG00000009087 RLG00000019958 RLG00000035989
rosa_multiflora Rmu_sc0000076.1_g000053 Rmu_sc0000076.1_g000054 Rmu_sc0000076.1_g000055 Rmu_sc0001211.1_g000022 Rmu_sc0001679.1_g000017 Rmu_sc0008518.1_g000018 Rmu_sc0008518.1_g000022 Rmu_sc0008518.1_g000024 Rmu_ssc0000482.1_g000004
rosa_roxburghii Rroxscaffold_1G00012230 Rroxscaffold_2G00102620 Rroxscaffold_3G00252010 Rroxscaffold_3G00252020 Rroxscaffold_3G00252030 Rroxscaffold_3G00252050 Rroxscaffold_7G00197030
rosa_rugosa Rorug02G0372500 Rorug02G0372600 Rorug06G0060800 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092600 Rorug07G0092700 Rorug07G0092800
rosa_samantha Rh2AG424300 Rh2BG433900 Rh2CG410900 Rh2DG443900 Rh5AG449900 Rh5DG481500 Rh5DG481700 Rh6AG180000 Rh6BG183200 Rh6CG179900 Rh6DG171700 Rh7AG222800 Rh7AG223900 Rh7AG224200 Rh7AG224300 Rh7BG219100 Rh7BG219200 Rh7BG219300 Rh7BG219500 Rh7CG235600 Rh7CG237400 Rh7CG237700 Rh7CG237800 Rh7DG229400 Rh7DG229600 Rh7DG231000
rosa_wichuraiana Rw2G034750 Rw5G042000 Rw6G015460 Rw7G019220 Rw7G019310 Rw7G019320 Rw7G019330 Rw7G019340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 126
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 130, 137
AsuC2I CCSGG 1 cut(s) 111
BaeGI GKGCMC 1 cut(s) 109
BanI GGYRCC 1 cut(s) 104
BbvI GCAGC 2 cut(s) 117, 124
BciT130I CCWGG 1 cut(s) 121
BcnI CCSGG 1 cut(s) 111
BfmI CTRYAG 2 cut(s) 18, 64
BisI GCNGC 2 cut(s) 131, 138
BlsI GCNGC 2 cut(s) 132, 139
Bme1390I CCNGG 2 cut(s) 111, 121
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 2 cut(s) 111, 121
BmsI GCATC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 111
Bsa29I ATCGAT 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 140
BseBI CCWGG 1 cut(s) 121
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 109
BseXI GCAGC 2 cut(s) 117, 124
BshNI GGYRCC 1 cut(s) 104
BshVI ATCGAT 1 cut(s) 87
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 109
BspDI ATCGAT 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 106
BspMAI CTGCAG 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 135
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 109, 119
BstSFI CTRYAG 2 cut(s) 18, 64
BstSLI GKGCMC 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 117, 124
Bsu15I ATCGAT 1 cut(s) 87
BsuTUI ATCGAT 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 135
ClaI ATCGAT 1 cut(s) 87
CviAII CATG 2 cut(s) 95, 192
CviJI RGCY 3 cut(s) 130, 137, 184
CviKI_1 RGCY 3 cut(s) 130, 137, 184
EcoRII CCWGG 1 cut(s) 119
FaeI CATG 2 cut(s) 98, 195
FaiI YATR 4 cut(s) 96, 156, 158, 193
FatI CATG 2 cut(s) 94, 191
Fnu4HI GCNGC 2 cut(s) 131, 138
Fsp4HI GCNGC 2 cut(s) 131, 138
GluI GCNGC 2 cut(s) 131, 138
GsuI CTGGAG 1 cut(s) 134
HapII CCGG 1 cut(s) 111
Hin1II CATG 2 cut(s) 98, 195
HpaII CCGG 1 cut(s) 111
Hpy188III TCNNGA 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 4 cut(s) 20, 140, 145, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
Hsp92II CATG 2 cut(s) 98, 195
LpnPI CCDG 7 cut(s) 6, 106, 119, 124, 133, 164, 191
Lsp1109I GCAGC 2 cut(s) 117, 124
LweI GCATC 1 cut(s) 154
MaeIII GTNAC 1 cut(s) 11
MboII GAAGA 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 1 cut(s) 49
MslI CAYNNNNRTG 1 cut(s) 159
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 2 cut(s) 111, 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 151
NciI CCSGG 1 cut(s) 111
NlaIII CATG 2 cut(s) 98, 195
NlaIV GGNNCC 1 cut(s) 106
PkrI GCNGC 2 cut(s) 132, 139
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 106
PstI CTGCAG 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 159
SatI GCNGC 2 cut(s) 131, 138
ScrFI CCNGG 2 cut(s) 111, 121
SduI GDGCHC 1 cut(s) 109
SetI ASST 3 cut(s) 106, 122, 186
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 2 cut(s) 18, 64
SmiMI CAYNNNNRTG 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 109, 119
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 87
TseI GCWGC 2 cut(s) 130, 137
TspDTI ATGAA 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.