pycom01g01120

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0002157
Physical Location & Seq
Forward (+)
1122095 .. 1123048
954 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g01120.1

Sequence Viewer

Length: 291 bp
ATGATTGGTTCCTATCCACCTGCCACGAAGTCCAAAAGTGGACGGAAGATGGTCAATTTTGCCCACAAAGCCGGCGGGTGCCTAAAACTTCCCGACGTCGATTCGTCGTCTACGGTGGTCCAACGGGGTCAAGGTTGGTTGGGTTTTGCTCCTGGGATGATGGGCTACAAAGCCCAAGTGGTGGCATCGGCCATCGCTTTGCCGATTTGCCGGAAAATCGAAAAGGGTGGCCGGAGCACCATTGATTTTCGTCAACTTTCGTGGCCTCAAACCGCCTCATGCCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

97

Amino Acids

10.21

Weight (kDa)

10.03

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 28
AatII GACGTC 1 cut(s) 99
Acc36I ACCTGC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 78
AccB7I CCANNNNNTGG 1 cut(s) 181
AccI GTMKAC 1 cut(s) 110
AciI CCGC 2 cut(s) 75, 273
AcoI YGGCCR 2 cut(s) 189, 229
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 181
AjnI CCWGG 1 cut(s) 151
Alw21I GWGCWC 1 cut(s) 239
AoxI GGCC 3 cut(s) 189, 229, 263
AspS9I GGNCC 1 cut(s) 118
AvaII GGWCC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 239
BccI CCATC 3 cut(s) 43, 154, 200
BciT130I CCWGG 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 10, 80
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 152, 283
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse118I RCCGGY 1 cut(s) 71
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 152, 283
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 181
BshFI GGCC 3 cut(s) 191, 231, 265
BshNI GGYRCC 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 239
BsiSI CCGG 3 cut(s) 72, 211, 232
BslI CCNNNNNNNGG 1 cut(s) 181
BsnI GGCC 3 cut(s) 191, 231, 265
Bsp1286I GDGCHC 1 cut(s) 239
Bsp19I CCATGG 1 cut(s) 283
BspACI CCGC 2 cut(s) 75, 273
BspANI GGCC 3 cut(s) 191, 231, 265
BspLI GGNNCC 2 cut(s) 10, 80
BspMI ACCTGC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 152, 283
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 115
BstACI GRCGYC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 73
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BsuRI GGCC 3 cut(s) 191, 231, 265
BtgI CCRYGG 1 cut(s) 283
BtgZI GCGATG 1 cut(s) 178
BtsCI GGATG 1 cut(s) 162
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 118
CspCI CAANNNNNGTGG 2 cut(s) 242, 277
CviAII CATG 2 cut(s) 279, 284
CviJI RGCY 6 cut(s) 71, 165, 173, 191, 231, 265
CviKI_1 RGCY 6 cut(s) 71, 165, 173, 191, 231, 265
EaeI YGGCCR 2 cut(s) 189, 229
Eco130I CCWWGG 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 282, 287
FaiI YATR 2 cut(s) 280, 285
FatI CATG 2 cut(s) 278, 283
FauI CCCGC 1 cut(s) 68
FblI GTMKAC 1 cut(s) 110
FokI GGATG 1 cut(s) 169
HaeIII GGCC 3 cut(s) 191, 231, 265
HapII CCGG 3 cut(s) 72, 211, 232
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 2 cut(s) 282, 287
HincII GTYRAC 1 cut(s) 254
HindII GTYRAC 1 cut(s) 254
HinfI GANTC 1 cut(s) 101
HpaII CCGG 3 cut(s) 72, 211, 232
Hpy166II GTNNAC 3 cut(s) 41, 111, 254
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 3 cut(s) 41, 111, 254
Hpy99I CGWCG 3 cut(s) 98, 101, 109
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 2 cut(s) 282, 287
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 154, 234
LpnPI CCDG 6 cut(s) 33, 85, 138, 165, 224, 245
LweI GCATC 1 cut(s) 194
MaeII ACGT 1 cut(s) 96
MboII GAAGA 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 2 cut(s) 276, 286
MroNI GCCGGC 1 cut(s) 71
MseI TTAA 1 cut(s) 289
MspI CCGG 3 cut(s) 72, 211, 232
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 68
NaeI GCCGGC 1 cut(s) 73
NcoI CCATGG 1 cut(s) 283
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 2 cut(s) 282, 287
NlaIV GGNNCC 2 cut(s) 10, 80
PaqCI CACCTGC 1 cut(s) 28
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 10, 80
PspPI GGNCC 1 cut(s) 118
SaqAI TTAA 1 cut(s) 289
Sau96I GGNCC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 239
SetI ASST 3 cut(s) 22, 99, 136
SfaNI GCATC 1 cut(s) 194
SinI GGWCC 1 cut(s) 118
Sse9I AATT 1 cut(s) 55
SsiI CCGC 2 cut(s) 75, 273
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 99, 219
TasI AATT 1 cut(s) 55
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 289
Tru9I TTAA 1 cut(s) 289
TspGWI ACGGA 1 cut(s) 58
Van91I CCANNNNNTGG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 110
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.