pycom02g19830

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0002157
Physical Location & Seq
Reverse (-)
17895115 .. 17895357
243 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g19830.1

Sequence Viewer

Length: 243 bp
ATGGTCAATTTTGCCCACAAAGCCGGCGGGTGCCTAAAACTTCCCGACGTTGATTCGTCATCTACGATGGTCCAACGGGGTCAAGGTTGGTTGGGTTTTGCTCCTGGGATGATGGGCTACAAAGCCCAAGTGGTGGCATCAGCCATCACTTTGCCGATTTGCCGAAAAATCGAACAGAGCGGCCGGAGCACTATTGATTTTCGTCAACTTTCGTGGCCTCCAACCGCCACATACCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

81

Amino Acids

8.66

Weight (kDa)

9.51

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 30
AccB7I CCANNNNNTGG 1 cut(s) 133
AccBSI CCGCTC 1 cut(s) 180
AciI CCGC 3 cut(s) 27, 180, 225
AcoI YGGCCR 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 133
AjnI CCWGG 1 cut(s) 103
Alw21I GWGCWC 1 cut(s) 191
AoxI GGCC 2 cut(s) 181, 215
AspS9I GGNCC 1 cut(s) 70
AvaII GGWCC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 191
BccI CCATC 3 cut(s) 61, 106, 152
BciT130I CCWGG 1 cut(s) 105
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 104, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 23
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 104, 235
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 133
BseX3I CGGCCG 1 cut(s) 181
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 2 cut(s) 183, 217
BshNI GGYRCC 1 cut(s) 30
BsiEI CGRYCG 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 2 cut(s) 24, 184
BslI CCNNNNNNNGG 1 cut(s) 133
BsnI GGCC 2 cut(s) 183, 217
Bsp1286I GDGCHC 1 cut(s) 191
Bsp19I CCATGG 1 cut(s) 235
BspACI CCGC 3 cut(s) 27, 180, 225
BspANI GGCC 2 cut(s) 183, 217
BspLI GGNNCC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 30
BsrBI CCGCTC 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 104, 235
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 25
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 1 cut(s) 114
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 20, 186
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstZI CGGCCG 1 cut(s) 181
BsuRI GGCC 2 cut(s) 183, 217
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 70
CspCI CAANNNNNGTGG 2 cut(s) 194, 229
CviAII CATG 1 cut(s) 236
CviJI RGCY 6 cut(s) 23, 117, 125, 143, 183, 217
CviKI_1 RGCY 6 cut(s) 23, 117, 125, 143, 183, 217
EaeI YGGCCR 1 cut(s) 181
EagI CGGCCG 1 cut(s) 181
EclXI CGGCCG 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 70
Eco52I CGGCCG 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 1 cut(s) 239
FaiI YATR 2 cut(s) 232, 237
FatI CATG 1 cut(s) 235
FauI CCCGC 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 181
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 181
HaeIII GGCC 2 cut(s) 183, 217
HapII CCGG 2 cut(s) 24, 184
Hin1II CATG 1 cut(s) 239
HincII GTYRAC 1 cut(s) 206
HindII GTYRAC 1 cut(s) 206
HinfI GANTC 1 cut(s) 53
HpaII CCGG 2 cut(s) 24, 184
Hpy166II GTNNAC 1 cut(s) 206
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 48
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 186
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 1 cut(s) 239
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
LmnI GCTCC 2 cut(s) 106, 186
LpnPI CCDG 4 cut(s) 37, 90, 117, 197
LweI GCATC 1 cut(s) 146
MaeII ACGT 1 cut(s) 48
MbiI CCGCTC 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 1 cut(s) 7
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 1 cut(s) 228
MroNI GCCGGC 1 cut(s) 23
MseI TTAA 1 cut(s) 241
MspI CCGG 2 cut(s) 24, 184
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 20, 186
NaeI GCCGGC 1 cut(s) 25
NcoI CCATGG 1 cut(s) 235
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PdiI GCCGGC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 133
PkrI GCNGC 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 241
SatI GCNGC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 191
SetI ASST 2 cut(s) 51, 88
SfaNI GCATC 1 cut(s) 146
SinI GGWCC 1 cut(s) 70
Sse9I AATT 1 cut(s) 7
SsiI CCGC 3 cut(s) 27, 180, 225
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 235
TaiI ACGT 1 cut(s) 51
TaqI TCGA 1 cut(s) 171
TasI AATT 1 cut(s) 7
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 241
Tru9I TTAA 1 cut(s) 241
Van91I CCANNNNNTGG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.