pycom17g17060

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0002157
Physical Location & Seq
Forward (+)
14955123 .. 14956308
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g17060.5

Sequence Viewer

Length: 861 bp
ATGGTCAATTTTGCCCACAAAGCCGGCGGGTGCCTAAAACTTCCCGATGTCAATTCGTCGTCTACGGTGGTCCAACGGGGTCAAGGTTGGTTGGGTTTTGCTCCTGGGATGATGGGCTACAAAGCCCAAGTGGTGGCATCGGCCATCACTTTGCCGATTTGCTGGAAAATCAAAAAGGCTACTTGGAGCACCGTGAGAACCGCCAACTTTCGTGGCCTCAAATTGCCACATACCATGGTTAATCAAGGTGGTTCTTGGGTGGGTTTGATAGAGGGGAATGAAAGCTTCAAGATGGTGGTGGTGGCGTCGAAAAAATCCATCGGAGTTGGCCGGAATAGGCCTTGGAAAATGGGTGGTCGCGAGGGGAAACATGCACGGGAAAGCTGGGAGCTTTTTTTTTTTTTTTTTTTTACCTTCTTTCTTTTTGATTGGCTAAAGTTAATTGGTCTACTATTCCCACAAGTTTCAAACGTTCATAACTATACCGTTATAATCCGGACTCGTAAACGGCTTTCGCCTATGCTCATACGTTTGTCTAGACGATCGATCAACATAAGTCAAAATCTTTGCCTCTATGACATTTTCGTAAATTCACTTTACGAATGTTTTAATCTAAAAACATTTAAATTTCACCAAAAAAAAAAAAAAAAAAAAAAAAAACCGAACAATTTGAGAAATTTTTTTAAAGTAGATATATTTAAAAAAAAATTATTTTCTTATTTTGACCTTGAAAAAATAAATATGGACCGTGAGGTCAAATTCAAAAGTTTACCCAAAAGAAAACACAAAAGGTTCAGTTTTTTACCGTTACCCTTGACTACCACCAGTTCGGCCATTAGCCAAAATCGTTTGCCCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

287

Amino Acids

33.22

Weight (kDa)

10.75

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 491
AasI GACNNNNNNGTC 1 cut(s) 752
AccB1I GGYRCC 1 cut(s) 30
AccB7I CCANNNNNTGG 1 cut(s) 133
AccI GTMKAC 2 cut(s) 62, 448
AccII CGCG 1 cut(s) 360
AccIII TCCGGA 1 cut(s) 495
AciI CCGC 2 cut(s) 27, 201
AclI AACGTT 1 cut(s) 471
AcoI YGGCCR 3 cut(s) 141, 328, 831
AcsI RAATTY 4 cut(s) 589, 626, 676, 758
AcyI GRCGYC 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 4 cut(s) 289, 468, 731, 763
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 3 cut(s) 285, 384, 391
AluI AGCT 3 cut(s) 285, 384, 391
Alw21I GWGCWC 1 cut(s) 191
Aor13HI TCCGGA 1 cut(s) 495
AoxI GGCC 5 cut(s) 141, 214, 328, 338, 831
ApoI RAATTY 4 cut(s) 589, 626, 676, 758
AspS9I GGNCC 2 cut(s) 70, 745
AsuHPI GGTGA 1 cut(s) 623
AvaII GGWCC 2 cut(s) 70, 745
BanI GGYRCC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 191
BccI CCATC 4 cut(s) 106, 152, 286, 326
BceAI ACGGC 1 cut(s) 524
BciT130I CCWGG 1 cut(s) 105
BfaI CTAG 1 cut(s) 537
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 2 cut(s) 70, 745
BmgT120I GGNCC 2 cut(s) 70, 745
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 146
Bsa29I ATCGAT 1 cut(s) 545
BsaHI GRCGYC 1 cut(s) 305
BsaJI CCNNGG 3 cut(s) 104, 234, 341
BsaWI WCCGGW 1 cut(s) 495
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 825
BseAI TCCGGA 1 cut(s) 495
BseBI CCWGG 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 545
BseDI CCNNGG 3 cut(s) 104, 234, 341
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 825
BseYI CCCAGC 1 cut(s) 384
Bsh1236I CGCG 1 cut(s) 360
Bsh1285I CGRYCG 1 cut(s) 545
BshFI GGCC 5 cut(s) 143, 216, 330, 340, 833
BshNI GGYRCC 1 cut(s) 30
BshVI ATCGAT 1 cut(s) 545
BsiEI CGRYCG 1 cut(s) 545
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 3 cut(s) 24, 331, 496
BslI CCNNNNNNNGG 1 cut(s) 133
BsnI GGCC 5 cut(s) 143, 216, 330, 340, 833
Bsp1286I GDGCHC 1 cut(s) 191
Bsp13I TCCGGA 1 cut(s) 495
Bsp143I GATC 2 cut(s) 542, 546
Bsp19I CCATGG 1 cut(s) 234
Bsp68I TCGCGA 1 cut(s) 360
BspACI CCGC 2 cut(s) 27, 201
BspANI GGCC 5 cut(s) 143, 216, 330, 340, 833
BspDI ATCGAT 1 cut(s) 545
BspEI TCCGGA 1 cut(s) 495
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 1 cut(s) 825
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 3 cut(s) 104, 234, 341
BssMI GATC 2 cut(s) 542, 546
BssNI GRCGYC 1 cut(s) 305
BssT1I CCWWGG 2 cut(s) 234, 341
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 5 cut(s) 67, 193, 487, 749, 807
BstACI GRCGYC 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 25
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 360
BstKTI GATC 2 cut(s) 545, 549
BstMBI GATC 2 cut(s) 542, 546
BstMCI CGRYCG 1 cut(s) 545
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 105
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 103
BstUI CGCG 1 cut(s) 360
Bsu15I ATCGAT 1 cut(s) 545
BsuRI GGCC 5 cut(s) 143, 216, 330, 340, 833
BsuTUI ATCGAT 1 cut(s) 545
BtgI CCRYGG 1 cut(s) 234
BtsCI GGATG 1 cut(s) 114
BtuMI TCGCGA 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 70, 745
ClaI ATCGAT 1 cut(s) 545
CseI GACGC 1 cut(s) 294
CspCI CAANNNNNGTGG 2 cut(s) 193, 228
CviAII CATG 2 cut(s) 235, 371
DpnI GATC 2 cut(s) 544, 548
DpnII GATC 2 cut(s) 542, 546
DraI TTTAAA 3 cut(s) 625, 685, 700
DrdI GACNNNNNNGTC 1 cut(s) 752
DseDI GACNNNNNNGTC 1 cut(s) 752
EaeI YGGCCR 3 cut(s) 141, 328, 831
Eco130I CCWWGG 2 cut(s) 234, 341
Eco147I AGGCCT 1 cut(s) 340
Eco47I GGWCC 2 cut(s) 70, 745
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 2 cut(s) 234, 341
ErhI CCWWGG 2 cut(s) 234, 341
FaeI CATG 2 cut(s) 238, 374
FatI CATG 2 cut(s) 234, 370
FauI CCCGC 1 cut(s) 20
FblI GTMKAC 2 cut(s) 62, 448
FokI GGATG 1 cut(s) 121
FspBI CTAG 1 cut(s) 537
GsaI CCCAGC 1 cut(s) 388
HaeIII GGCC 5 cut(s) 143, 216, 330, 340, 833
HapII CCGG 3 cut(s) 24, 331, 496
HgaI GACGC 1 cut(s) 294
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 2 cut(s) 238, 374
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 1 cut(s) 499
HpaII CCGG 3 cut(s) 24, 331, 496
HphI GGTGA 1 cut(s) 623
Hpy166II GTNNAC 4 cut(s) 63, 449, 506, 770
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 5 cut(s) 44, 289, 359, 496, 537
Hpy8I GTNNAC 4 cut(s) 63, 449, 506, 770
Hpy99I CGWCG 2 cut(s) 61, 310
HpyAV CCTTC 1 cut(s) 424
HpyCH4III ACNGT 5 cut(s) 67, 193, 487, 749, 807
HpyCH4IV ACGT 2 cut(s) 471, 529
HpyCH4V TGCA 1 cut(s) 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpySE526I ACGT 2 cut(s) 471, 529
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 2 cut(s) 238, 374
Kpn2I TCCGGA 1 cut(s) 495
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
Kzo9I GATC 2 cut(s) 542, 546
LmnI GCTCC 3 cut(s) 106, 186, 388
LpnPI CCDG 8 cut(s) 37, 90, 117, 148, 344, 370, 509, 838
LweI GCATC 1 cut(s) 146
MaeI CTAG 1 cut(s) 537
MaeII ACGT 2 cut(s) 471, 529
MaeIII GTNAC 1 cut(s) 807
MalI GATC 2 cut(s) 544, 548
MboI GATC 2 cut(s) 542, 546
MhlI GDGCHC 1 cut(s) 191
MlyI GAGTC 1 cut(s) 493
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 5 cut(s) 227, 265, 355, 581, 745
MroI TCCGGA 1 cut(s) 495
MroNI GCCGGC 1 cut(s) 23
MseI TTAA 7 cut(s) 240, 440, 609, 624, 684, 699, 859
MspI CCGG 3 cut(s) 24, 331, 496
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 20
NaeI GCCGGC 1 cut(s) 25
NcoI CCATGG 1 cut(s) 234
NdeII GATC 2 cut(s) 542, 546
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 2 cut(s) 238, 374
NlaIV GGNNCC 1 cut(s) 32
NruI TCGCGA 1 cut(s) 360
NspI RCATGY 1 cut(s) 374
PceI AGGCCT 1 cut(s) 340
PcsI WCGNNNNNNNCGW 1 cut(s) 853
PdiI GCCGGC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 133
Ple19I CGATCG 1 cut(s) 545
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
PsiI TTATAA 1 cut(s) 491
Psp1406I AACGTT 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 384
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 2 cut(s) 70, 745
PvuI CGATCG 1 cut(s) 545
RruI TCGCGA 1 cut(s) 360
SaqAI TTAA 7 cut(s) 240, 440, 609, 624, 684, 699, 859
Sau3AI GATC 2 cut(s) 542, 546
Sau96I GGNCC 2 cut(s) 70, 745
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 191
SfaNI GCATC 1 cut(s) 146
SinI GGWCC 2 cut(s) 70, 745
SmiI ATTTAAAT 1 cut(s) 625
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 2 cut(s) 27, 201
SspMI CTAG 1 cut(s) 537
StuI AGGCCT 1 cut(s) 340
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 2 cut(s) 234, 341
SwaI ATTTAAAT 1 cut(s) 625
TaaI ACNGT 5 cut(s) 67, 193, 487, 749, 807
TaiI ACGT 2 cut(s) 474, 532
TaqI TCGA 2 cut(s) 308, 545
Tru1I TTAA 7 cut(s) 240, 440, 609, 624, 684, 699, 859
Tru9I TTAA 7 cut(s) 240, 440, 609, 624, 684, 699, 859
TspDTI ATGAA 2 cut(s) 294, 464
Van91I CCANNNNNTGG 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 70, 745
XapI RAATTY 4 cut(s) 589, 626, 676, 758
XbaI TCTAGA 1 cut(s) 536
XceI RCATGY 1 cut(s) 374
XmiI GTMKAC 2 cut(s) 62, 448
XspI CTAG 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.