pycom15g00190

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002157
Physical Location & Seq
Forward (+)
116607 .. 116849
243 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g00190.1

Sequence Viewer

Length: 243 bp
ATGGTCAATTTTGCCCACAAAACCGGCGGGTGCCTAAAACTTCCCGACGTCAATTCGTCGTCTACGGTGGTCCAACGGGGTCAAGGTTGGTTGGGTTTTGCTCCTGGGATGATGGGCTACCAAGCCCAAGTGGTGGCATCGGCCATCGCTTTGCCGATTTGCCGGAAAATCGAAAAGGGTGGCCAGAGCACTATTGATTTTCGTCAACTTTCGTGGCTTCAAACCGCCACATCCCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

81

Amino Acids

8.54

Weight (kDa)

9.59

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 30
AccB7I CCANNNNNTGG 1 cut(s) 133
AccI GTMKAC 1 cut(s) 62
AciI CCGC 2 cut(s) 27, 225
AcoI YGGCCR 2 cut(s) 141, 181
AcyI GRCGYC 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 1 cut(s) 221
AjnI CCWGG 1 cut(s) 103
Alw21I GWGCWC 1 cut(s) 191
AoxI GGCC 2 cut(s) 141, 181
AspS9I GGNCC 1 cut(s) 70
AvaII GGWCC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 183
BanI GGYRCC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 191
BccI CCATC 2 cut(s) 106, 152
BciT130I CCWGG 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 104, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 23
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 104, 235
BseGI GGATG 2 cut(s) 114, 230
BseLI CCNNNNNNNGG 1 cut(s) 133
BshFI GGCC 2 cut(s) 143, 183
BshNI GGYRCC 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 2 cut(s) 24, 163
BslI CCNNNNNNNGG 1 cut(s) 133
BsnI GGCC 2 cut(s) 143, 183
Bsp1286I GDGCHC 1 cut(s) 191
Bsp19I CCATGG 1 cut(s) 235
BspACI CCGC 2 cut(s) 27, 225
BspANI GGCC 2 cut(s) 143, 183
BspLI GGNNCC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 104, 235
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 2 cut(s) 114, 230
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BsuRI GGCC 2 cut(s) 143, 183
BtgI CCRYGG 1 cut(s) 235
BtgZI GCGATG 1 cut(s) 130
BtsCI GGATG 2 cut(s) 114, 230
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 70
CspCI CAANNNNNGTGG 2 cut(s) 194, 229
CviAII CATG 1 cut(s) 236
CviJI RGCY 5 cut(s) 117, 125, 143, 183, 217
CviKI_1 RGCY 5 cut(s) 117, 125, 143, 183, 217
EaeI YGGCCR 2 cut(s) 141, 181
Eco130I CCWWGG 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 1 cut(s) 239
FaiI YATR 1 cut(s) 237
FatI CATG 1 cut(s) 235
FauI CCCGC 1 cut(s) 20
FblI GTMKAC 1 cut(s) 62
FokI GGATG 2 cut(s) 121, 217
HaeIII GGCC 2 cut(s) 143, 183
HapII CCGG 2 cut(s) 24, 163
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 1 cut(s) 239
HincII GTYRAC 1 cut(s) 206
HindII GTYRAC 1 cut(s) 206
HpaII CCGG 2 cut(s) 24, 163
Hpy166II GTNNAC 2 cut(s) 63, 206
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 2 cut(s) 63, 206
Hpy99I CGWCG 2 cut(s) 50, 61
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 1 cut(s) 239
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 5 cut(s) 37, 90, 117, 176, 197
LweI GCATC 1 cut(s) 146
MaeII ACGT 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 191
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 2 cut(s) 7, 52
MluNI TGGCCA 1 cut(s) 183
MmeI TCCRAC 1 cut(s) 97
Mox20I TGGCCA 1 cut(s) 183
MscI TGGCCA 1 cut(s) 183
MseI TTAA 1 cut(s) 241
Msp20I TGGCCA 1 cut(s) 183
MspI CCGG 2 cut(s) 24, 163
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
NcoI CCATGG 1 cut(s) 235
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 241
Sau96I GGNCC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 191
SetI ASST 2 cut(s) 51, 88
SfaNI GCATC 1 cut(s) 146
SinI GGWCC 1 cut(s) 70
Sse9I AATT 2 cut(s) 7, 52
SsiI CCGC 2 cut(s) 27, 225
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 51
TaqI TCGA 1 cut(s) 171
TasI AATT 2 cut(s) 7, 52
Tru1I TTAA 1 cut(s) 241
Tru9I TTAA 1 cut(s) 241
Van91I CCANNNNNTGG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 62
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.