pycom07g22760

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0002157
Physical Location & Seq
Forward (+)
23964777 .. 23965082
306 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g22760.1

Sequence Viewer

Length: 306 bp
ATGAAGATCTCAGTGAGTGGAGAAACTTTCATACCTGCCACGAAGTCCAAAAGTGGACGGAAGATGGTCAATTTTGCCCACAAAGCCGGCGGATGCCTAAAATTTCCCGATGTCGATTCGTCTTCTACATTGGTCCAACGGGGTCAAAGTTGGTTGGGTTTTTCTCCTGGAATGATGGGCTACAAAGCCCAAGTGGTGGCATCGGCCATCACTTTGCCGATTTTCCTGAAAATCAAAAAGAGTGGCCGGAGCACCGTTGATTTTCGTCGACTTTCGTGGCCTCAAACCGCCACACTCCATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

102

Amino Acids

11.01

Weight (kDa)

10.41

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
AccB7I CCANNNNNTGG 1 cut(s) 196
AccI GTMKAC 1 cut(s) 268
AciI CCGC 2 cut(s) 90, 288
AcoI YGGCCR 2 cut(s) 204, 244
AcsI RAATTY 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 196
AjnI CCWGG 1 cut(s) 166
Alw21I GWGCWC 1 cut(s) 254
AoxI GGCC 3 cut(s) 204, 244, 278
ApoI RAATTY 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 133
AvaII GGWCC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 254
BccI CCATC 3 cut(s) 58, 169, 215
BciT130I CCWGG 1 cut(s) 168
BfuAI ACCTGC 1 cut(s) 43
BglII AGATCT 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 2 cut(s) 83, 209
BpiI GAAGAC 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse118I RCCGGY 1 cut(s) 86
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 24
BshFI GGCC 3 cut(s) 206, 246, 280
BsiHKAI GWGCWC 1 cut(s) 254
BsiSI CCGG 2 cut(s) 87, 247
BslI CCNNNNNNNGG 1 cut(s) 196
BsnI GGCC 3 cut(s) 206, 246, 280
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 2 cut(s) 90, 288
BspANI GGCC 3 cut(s) 206, 246, 280
BspCNI CTCAG 1 cut(s) 23
BspMI ACCTGC 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 86
BssMI GATC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 98
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 3 cut(s) 206, 246, 280
BtsCI GGATG 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 133
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 1 cut(s) 299
CviJI RGCY 6 cut(s) 86, 180, 188, 206, 246, 280
CviKI_1 RGCY 6 cut(s) 86, 180, 188, 206, 246, 280
DdeI CTNAG 1 cut(s) 10
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
EaeI YGGCCR 2 cut(s) 204, 244
EciI GGCGGA 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 166
FaeI CATG 1 cut(s) 302
FaiI YATR 2 cut(s) 32, 300
FatI CATG 1 cut(s) 298
FblI GTMKAC 1 cut(s) 268
FokI GGATG 1 cut(s) 105
HaeIII GGCC 3 cut(s) 206, 246, 280
HapII CCGG 2 cut(s) 87, 247
Hin1II CATG 1 cut(s) 302
HincII GTYRAC 1 cut(s) 269
HindII GTYRAC 1 cut(s) 269
HinfI GANTC 1 cut(s) 116
HpaII CCGG 2 cut(s) 87, 247
Hpy166II GTNNAC 2 cut(s) 56, 269
Hpy188III TCNNGA 2 cut(s) 107, 226
Hpy8I GTNNAC 2 cut(s) 56, 269
Hpy99I CGWCG 1 cut(s) 270
HpyCH4III ACNGT 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 10
Hsp92II CATG 1 cut(s) 302
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 6 cut(s) 48, 100, 153, 180, 239, 260
LweI GCATC 2 cut(s) 83, 209
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 3 cut(s) 16, 73, 114
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 2 cut(s) 70, 101
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 1 cut(s) 291
MroNI GCCGGC 1 cut(s) 86
MseI TTAA 1 cut(s) 304
MspI CCGG 2 cut(s) 87, 247
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 83
NaeI GCCGGC 1 cut(s) 88
NdeII GATC 1 cut(s) 6
NgoMIV GCCGGC 1 cut(s) 86
NlaIII CATG 1 cut(s) 302
PdiI GCCGGC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 196
PfoI TCCNGGA 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspPI GGNCC 1 cut(s) 133
PsuI RGATCY 1 cut(s) 6
SalI GTCGAC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 304
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 254
SetI ASST 1 cut(s) 37
SfaNI GCATC 2 cut(s) 83, 209
SinI GGWCC 1 cut(s) 133
Sse9I AATT 2 cut(s) 70, 101
SsiI CCGC 2 cut(s) 90, 288
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 114, 268
TasI AATT 2 cut(s) 70, 101
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 304
Tru9I TTAA 1 cut(s) 304
TscAI CASTG 1 cut(s) 18
TspDTI ATGAA 2 cut(s) 17, 19
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.