pycom16g09680

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0002157
Physical Location & Seq
Forward (+)
6480408 .. 6480905
498 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g09680.1

Sequence Viewer

Length: 498 bp
ATGAAGTCCAAAAGTGGACGGAAGATGGTCAATTTTGCCCACAAAGCTGGCAGGTGCCTAAAACTTCCCGACGTCGATTCGTCGTCTACGGTGGTCCAATGGGGTCAAGGTTGGTTGGGTTTTTCTCCTGGGATGATGGGATACAAAGCCCAGTGGTGGAATCGGCCATTGCTTTGCCGATTTGCCGGAAAATCGAAAAGGGTGGCCGGAGCACTATTGATTTTCGTCAACTTTCGTGGCCTCAAACCGCCACATCCCATAGTTAATCAAGGTGGCTCTTGGGTGGTTTTTGTAGAGGGGAATGAGAGTTTCAAGATGGTGGTGGTGGCATCGAAAAACTCCACCGGAGTTGGCCGGAATCGGCCTTGGAAAATGGGAACTTGTGGTGGGTGTGGGTGGACGGGAAAGCCACTTCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTCCCTCATTTCTGATTTTGGCTTCACCCCACAAAGTGGGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

166

Amino Acids

18.37

Weight (kDa)

10.73

Isoelectric Point (pI)

30.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 42
AatII GACGTC 1 cut(s) 75
Acc36I ACCTGC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 54
AccB7I CCANNNNNTGG 1 cut(s) 487
AccI GTMKAC 1 cut(s) 86
AciI CCGC 1 cut(s) 248
AcoI YGGCCR 3 cut(s) 164, 204, 352
AcyI GRCGYC 1 cut(s) 72
AdeI CACNNNGTG 1 cut(s) 487
AfiI CCNNNNNNNGG 2 cut(s) 156, 487
AgsI TTSAA 1 cut(s) 313
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 214
AoxI GGCC 5 cut(s) 164, 204, 238, 352, 362
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 468
AvaII GGWCC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 214
BccI CCATC 3 cut(s) 19, 130, 310
BciT130I CCWGG 1 cut(s) 129
BciVI GTATCC 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 42
BfuI GTATCC 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 129
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 1 cut(s) 338
BmuI ACTGGG 1 cut(s) 145
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 128, 365
BsaWI WCCGGW 1 cut(s) 344
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 487
Bse1I ACTGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 128, 365
BseGI GGATG 2 cut(s) 138, 253
BseLI CCNNNNNNNGG 2 cut(s) 156, 487
BseMI GCAATG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 151
BshFI GGCC 5 cut(s) 166, 206, 240, 354, 364
BshNI GGYRCC 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 4 cut(s) 186, 207, 345, 355
BslI CCNNNNNNNGG 2 cut(s) 156, 487
BsnI GGCC 5 cut(s) 166, 206, 240, 354, 364
Bsp1286I GDGCHC 1 cut(s) 214
BspACI CCGC 1 cut(s) 248
BspANI GGCC 5 cut(s) 166, 206, 240, 354, 364
BspLI GGNNCC 1 cut(s) 56
BspMI ACCTGC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 167
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 128, 365
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 365
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 49
BstF5I GGATG 2 cut(s) 138, 253
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 47
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 5 cut(s) 166, 206, 240, 354, 364
BtsCI GGATG 2 cut(s) 138, 253
BtsIMutI CAGTG 1 cut(s) 158
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 94
CspCI CAANNNNNGTGG 4 cut(s) 217, 252, 331, 366
DraIII CACNNNGTG 1 cut(s) 487
EaeI YGGCCR 3 cut(s) 164, 204, 352
Eco130I CCWWGG 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 365
ErhI CCWWGG 1 cut(s) 365
FaiI YATR 1 cut(s) 260
FblI GTMKAC 1 cut(s) 86
FokI GGATG 2 cut(s) 145, 240
HaeIII GGCC 5 cut(s) 166, 206, 240, 354, 364
HapII CCGG 4 cut(s) 186, 207, 345, 355
Hin1I GRCGYC 1 cut(s) 72
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 3 cut(s) 77, 160, 358
HpaII CCGG 4 cut(s) 186, 207, 345, 355
HphI GGTGA 1 cut(s) 468
Hpy166II GTNNAC 4 cut(s) 17, 87, 229, 399
Hpy188I TCNGA 1 cut(s) 465
Hpy188III TCNNGA 2 cut(s) 68, 313
Hpy8I GTNNAC 4 cut(s) 17, 87, 229, 399
Hpy99I CGWCG 3 cut(s) 74, 77, 85
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 9 cut(s) 33, 37, 114, 141, 164, 199, 220, 358, 368
LweI GCATC 1 cut(s) 338
MaeII ACGT 1 cut(s) 72
MboII GAAGA 3 cut(s) 34, 440, 443
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 1 cut(s) 31
MnlI CCTC 3 cut(s) 251, 289, 466
MseI TTAA 2 cut(s) 264, 496
MspI CCGG 4 cut(s) 186, 207, 345, 355
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 44
NlaIV GGNNCC 1 cut(s) 56
PaqCI CACCTGC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 77, 160, 358
PflMI CCANNNNNTGG 1 cut(s) 487
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 94
SaqAI TTAA 2 cut(s) 264, 496
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 214
SetI ASST 5 cut(s) 49, 56, 75, 112, 274
SfaNI GCATC 1 cut(s) 338
SinI GGWCC 1 cut(s) 94
Sse9I AATT 1 cut(s) 31
SsiI CCGC 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 75
TaqI TCGA 3 cut(s) 75, 194, 332
TasI AATT 1 cut(s) 31
TfiI GAWTC 3 cut(s) 77, 160, 358
Tru1I TTAA 2 cut(s) 264, 496
Tru9I TTAA 2 cut(s) 264, 496
TscAI CASTG 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 1 cut(s) 158
Van91I CCANNNNNTGG 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 86
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.