pycom01g03890

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0002157
Physical Location & Seq
Forward (+)
2930702 .. 2932127
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g03890.5

Sequence Viewer

Length: 579 bp
ATGATTGGTCCCTATCCACCTGCCACGAAGTCCAAAAGTGGACGGAAGATGATCAATTTTGCCCACGAAGCCGGCGGGTGCCTAAAACTTCCCGACGTCGATTCGTCGTCTACGGTGGTCCAACGGGGTCAAGGTTGGTTGGGTTTTTCTCCTGGGATGATGGGCTACAAAGCCCAAGTGGTGGCATCGGCCATTGCTTTGCCGATTTGCCGGAAAATCGAAAAGGGTGGCCGGAGCACCATTGATTTTCGTCAACTTTCGTGGCCTCAAACCTCCACATCCCATGCGATCTTCAAGATGGTGGTGGTGGCATCGAAAAACTCCACCGGAGTTGGCCGGAATCGGCCTTGGAAAATGGGTGGTCGCGAGTGGGAAAACCCACGAGAAATGCTGGGATTTTTTTTTTTTTTTGTTCTTTCTTTTTCTTTCTTTCCTTTTTCTGATTGGACCGTTATAATCCGGACTCGCAAACGGCTTTCGCCTATGCGTTCACATCCACGAGTATTACGAGAATATGTTAAAAGAATAATCCTTAAAAACGTAAAATTTGGAACGGGTTGTCACACTTTCTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

193

Amino Acids

21.73

Weight (kDa)

10.86

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 455
AarI CACCTGC 1 cut(s) 28
AatII GACGTC 1 cut(s) 99
Acc36I ACCTGC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 78
AccB7I CCANNNNNTGG 1 cut(s) 181
AccI GTMKAC 1 cut(s) 110
AccII CGCG 1 cut(s) 366
AccIII TCCGGA 1 cut(s) 459
AciI CCGC 1 cut(s) 75
AcoI YGGCCR 3 cut(s) 189, 229, 334
AcsI RAATTY 1 cut(s) 545
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 1 cut(s) 295
AjnI CCWGG 1 cut(s) 151
Alw21I GWGCWC 1 cut(s) 239
Aor13HI TCCGGA 1 cut(s) 459
AoxI GGCC 5 cut(s) 189, 229, 263, 334, 344
ApoI RAATTY 1 cut(s) 545
AspS9I GGNCC 3 cut(s) 8, 118, 447
AvaII GGWCC 3 cut(s) 8, 118, 447
BanI GGYRCC 1 cut(s) 78
BauI CACGAG 2 cut(s) 381, 498
Bbv12I GWGCWC 1 cut(s) 239
BccI CCATC 2 cut(s) 154, 292
BceAI ACGGC 1 cut(s) 488
BciT130I CCWGG 1 cut(s) 153
BclI TGATCA 1 cut(s) 51
BfuAI ACCTGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 3 cut(s) 8, 118, 447
BmgT120I GGNCC 3 cut(s) 8, 118, 447
BmiI GGNNCC 2 cut(s) 10, 80
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 2 cut(s) 194, 320
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 152, 347
BsaWI WCCGGW 2 cut(s) 326, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse118I RCCGGY 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 192
BseAI TCCGGA 1 cut(s) 459
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 152, 347
BseGI GGATG 3 cut(s) 162, 278, 493
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 192
BseYI CCCAGC 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 5 cut(s) 191, 231, 265, 336, 346
BshNI GGYRCC 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 239
BsiSI CCGG 6 cut(s) 72, 211, 232, 327, 337, 460
BslI CCNNNNNNNGG 1 cut(s) 181
BsnI GGCC 5 cut(s) 191, 231, 265, 336, 346
Bsp1286I GDGCHC 1 cut(s) 239
Bsp13I TCCGGA 1 cut(s) 459
Bsp143I GATC 2 cut(s) 51, 288
Bsp68I TCGCGA 1 cut(s) 366
BspACI CCGC 1 cut(s) 75
BspANI GGCC 5 cut(s) 191, 231, 265, 336, 346
BspEI TCCGGA 1 cut(s) 459
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 2 cut(s) 10, 80
BspMI ACCTGC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 152, 347
BssMI GATC 2 cut(s) 51, 288
BssNI GRCGYC 1 cut(s) 96
BssSI CACGAG 2 cut(s) 381, 498
BssT1I CCWWGG 1 cut(s) 347
Bst2BI CACGAG 2 cut(s) 381, 498
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 115, 451
BstACI GRCGYC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 73
BstF5I GGATG 3 cut(s) 162, 278, 493
BstFNI CGCG 1 cut(s) 366
BstKTI GATC 2 cut(s) 54, 291
BstMBI GATC 2 cut(s) 51, 288
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstUI CGCG 1 cut(s) 366
BsuRI GGCC 5 cut(s) 191, 231, 265, 336, 346
BtsCI GGATG 3 cut(s) 162, 278, 493
BtuMI TCGCGA 1 cut(s) 366
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 3 cut(s) 8, 118, 447
CspCI CAANNNNNGTGG 4 cut(s) 242, 277, 313, 348
CviAII CATG 1 cut(s) 284
CviJI RGCY 9 cut(s) 71, 165, 173, 191, 231, 265, 336, 346, 475
CviKI_1 RGCY 9 cut(s) 71, 165, 173, 191, 231, 265, 336, 346, 475
DpnI GATC 2 cut(s) 53, 290
DpnII GATC 2 cut(s) 51, 288
EaeI YGGCCR 3 cut(s) 189, 229, 334
Eco130I CCWWGG 1 cut(s) 347
Eco47I GGWCC 3 cut(s) 8, 118, 447
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 1 cut(s) 287
FaiI YATR 4 cut(s) 285, 455, 485, 516
FatI CATG 1 cut(s) 283
FauI CCCGC 1 cut(s) 68
FbaI TGATCA 1 cut(s) 51
FblI GTMKAC 1 cut(s) 110
FokI GGATG 3 cut(s) 169, 265, 480
GsaI CCCAGC 1 cut(s) 395
HaeIII GGCC 5 cut(s) 191, 231, 265, 336, 346
HapII CCGG 6 cut(s) 72, 211, 232, 327, 337, 460
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 1 cut(s) 287
HincII GTYRAC 1 cut(s) 254
HindII GTYRAC 1 cut(s) 254
HinfI GANTC 3 cut(s) 101, 340, 463
HpaII CCGG 6 cut(s) 72, 211, 232, 327, 337, 460
Hpy166II GTNNAC 4 cut(s) 41, 111, 254, 491
Hpy188I TCNGA 1 cut(s) 442
Hpy188III TCNNGA 4 cut(s) 92, 295, 365, 460
Hpy8I GTNNAC 4 cut(s) 41, 111, 254, 491
Hpy99I CGWCG 3 cut(s) 98, 101, 109
HpyCH4III ACNGT 2 cut(s) 115, 451
HpyCH4IV ACGT 2 cut(s) 96, 540
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpySE526I ACGT 2 cut(s) 96, 540
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 287
Kpn2I TCCGGA 1 cut(s) 459
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 2 cut(s) 51, 288
LmnI GCTCC 1 cut(s) 234
LweI GCATC 2 cut(s) 194, 320
MaeII ACGT 2 cut(s) 96, 540
MaeIII GTNAC 1 cut(s) 560
MalI GATC 2 cut(s) 53, 290
MboI GATC 2 cut(s) 51, 288
MboII GAAGA 2 cut(s) 58, 283
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 3 cut(s) 55, 545, 574
MlyI GAGTC 1 cut(s) 457
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 2 cut(s) 276, 283
MroI TCCGGA 1 cut(s) 459
MroNI GCCGGC 1 cut(s) 71
MseI TTAA 4 cut(s) 519, 534, 573, 577
MspI CCGG 6 cut(s) 72, 211, 232, 327, 337, 460
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 1 cut(s) 68
NaeI GCCGGC 1 cut(s) 73
NdeII GATC 2 cut(s) 51, 288
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 1 cut(s) 287
NlaIV GGNNCC 2 cut(s) 10, 80
NmuCI GTSAC 1 cut(s) 560
NruI TCGCGA 1 cut(s) 366
PacI TTAATTAA 1 cut(s) 577
PaqCI CACCTGC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 505
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 101, 340
PflMI CCANNNNNTGG 1 cut(s) 181
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PsiI TTATAA 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 10, 80
PspPI GGNCC 3 cut(s) 8, 118, 447
RruI TCGCGA 1 cut(s) 366
SaqAI TTAA 4 cut(s) 519, 534, 573, 577
Sau3AI GATC 2 cut(s) 51, 288
Sau96I GGNCC 3 cut(s) 8, 118, 447
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 239
SetI ASST 5 cut(s) 22, 99, 136, 275, 543
SfaNI GCATC 2 cut(s) 194, 320
SinI GGWCC 3 cut(s) 8, 118, 447
Sse9I AATT 3 cut(s) 55, 545, 574
SsiI CCGC 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 2 cut(s) 115, 451
TaiI ACGT 2 cut(s) 99, 543
TaqI TCGA 3 cut(s) 99, 219, 314
TasI AATT 3 cut(s) 55, 545, 574
TfiI GAWTC 2 cut(s) 101, 340
Tru1I TTAA 4 cut(s) 519, 534, 573, 577
Tru9I TTAA 4 cut(s) 519, 534, 573, 577
TseFI GTSAC 1 cut(s) 560
Tsp45I GTSAC 1 cut(s) 560
TspGWI ACGGA 1 cut(s) 58
Van91I CCANNNNNTGG 1 cut(s) 181
VpaK11BI GGWCC 3 cut(s) 8, 118, 447
XapI RAATTY 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 110
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.