pycom05g10900

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0002157
Physical Location & Seq
Reverse (-)
14355284 .. 14355526
243 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g10900.1

Sequence Viewer

Length: 243 bp
ATGGTCAATTTTGCCCACGAAGCCGGCGGGTGCCTAAAACTTCCCGACATCGATTCGTCGTCTACGGTGGTCCAACGAGGTCAAGGTTGGTTGGTTTTTTCTCCTGGGATGATGGGCTACAAAGACCAAGTGGTGGCATCGGCCATTGCTTTGCCGATTTACCGGAAAATCGAGAAGGGTGGCCGGAGCACCATTGATTTTCATCAACTTTCGTGGCCTCAAACCGCCTCATACCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

81

Amino Acids

8.74

Weight (kDa)

7.93

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 30
AccB7I CCANNNNNTGG 1 cut(s) 133
AccI GTMKAC 1 cut(s) 62
AciI CCGC 2 cut(s) 27, 225
AcoI YGGCCR 2 cut(s) 141, 181
AfiI CCNNNNNNNGG 1 cut(s) 133
AjnI CCWGG 1 cut(s) 103
Alw21I GWGCWC 1 cut(s) 191
AoxI GGCC 3 cut(s) 141, 181, 215
AspS9I GGNCC 1 cut(s) 70
AvaII GGWCC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 191
BccI CCATC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 146
Bsa29I ATCGAT 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 104, 235
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 104, 235
BseGI GGATG 1 cut(s) 114
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 144
BshFI GGCC 3 cut(s) 143, 183, 217
BshNI GGYRCC 1 cut(s) 30
BshVI ATCGAT 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 3 cut(s) 24, 163, 184
BslI CCNNNNNNNGG 1 cut(s) 133
BsnI GGCC 3 cut(s) 143, 183, 217
Bsp1286I GDGCHC 1 cut(s) 191
Bsp19I CCATGG 1 cut(s) 235
BspACI CCGC 2 cut(s) 27, 225
BspANI GGCC 3 cut(s) 143, 183, 217
BspDI ATCGAT 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 104, 235
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 25
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 3 cut(s) 143, 183, 217
BsuTUI ATCGAT 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 70
ClaI ATCGAT 1 cut(s) 51
CspCI CAANNNNNGTGG 2 cut(s) 194, 229
CviAII CATG 1 cut(s) 236
CviJI RGCY 5 cut(s) 23, 117, 143, 183, 217
CviKI_1 RGCY 5 cut(s) 23, 117, 143, 183, 217
EaeI YGGCCR 2 cut(s) 141, 181
Eco130I CCWWGG 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 1 cut(s) 239
FaiI YATR 2 cut(s) 232, 237
FatI CATG 1 cut(s) 235
FauI CCCGC 1 cut(s) 20
FblI GTMKAC 1 cut(s) 62
FokI GGATG 1 cut(s) 121
HaeIII GGCC 3 cut(s) 143, 183, 217
HapII CCGG 3 cut(s) 24, 163, 184
Hin1II CATG 1 cut(s) 239
HinfI GANTC 1 cut(s) 53
HpaII CCGG 3 cut(s) 24, 163, 184
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 2 cut(s) 44, 172
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
Hsp92II CATG 1 cut(s) 239
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 5 cut(s) 37, 90, 117, 176, 197
LweI GCATC 1 cut(s) 146
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 1 cut(s) 7
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 3 cut(s) 71, 228, 238
MroNI GCCGGC 1 cut(s) 23
MseI TTAA 1 cut(s) 241
MspI CCGG 3 cut(s) 24, 163, 184
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 20
NaeI GCCGGC 1 cut(s) 25
NcoI CCATGG 1 cut(s) 235
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 1 cut(s) 32
PdiI GCCGGC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 241
Sau96I GGNCC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 191
SetI ASST 2 cut(s) 82, 88
SfaNI GCATC 1 cut(s) 146
SinI GGWCC 1 cut(s) 70
Sse9I AATT 1 cut(s) 7
SsiI CCGC 2 cut(s) 27, 225
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 2 cut(s) 51, 171
TasI AATT 1 cut(s) 7
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 241
Tru9I TTAA 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 191
Van91I CCANNNNNTGG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.