Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Reverse (-)

20444589 .. 20447786

Gene Structure 3198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGAAATGTGATTCTCCTTGCTATTGTCCGCCAGGAACACTATAAATACCTACACACTCGAAAAATCGAAATCGAAAGACTCCGCTTAAAGTCTCAAACTTTGATCGAATCCATGGCGATAATCTCCGACATCCAGGAAGAGCAGAGGGCGCCCGAGAGGAAGCCTTCGAAGGCGTCGCCGTCGTCGAAAGAGTATACCTTCACCGCGAAGATTGATCGCAGGAACCCCCTTGATTTAGTGGAGAAGACGTTGGAATTTATTGCTCGGGAGAGCGATTTCTTCAAGAGGGAGTCGTCGGAGAGGGAGGTCTTTGCGCTGGCGCGGCGCTTCAGGGATAAGGAGAGGAAGAAAGAGGAGGAGGAGAGGAAGAAGAGGAGGCAGGAGGAGGAAGAGAGGAGGAAGAAGGAGGAGGCGGAGAAGAAGGCGGAGGCGGAGCTGAGGGGGGAGGTGATAAAGGATGAAACTGAGGAGGAGGAAAATGGCTTAAAAAATCCAAACAAAGGGAATGGACTGGATTTGGAGAAGTACTCGTGGACGCAGAGCCTTCAGGAGATTAATGTCGTTGTCCATGTGCCGCCTGGAACTAAATCTAGCTTTGTTGTGTGCGAGATCAAGAAGAATCATCTGAAGGTTGGACTGAAGGGGCAGCCTCCGATCATTGATGGCGAACTTTTGCAGTCTATCAAGCCCGATGATTGTTACTGGAGCATAGAGGATCAGAGTGCTGTCTCAATTCTTCTGACCAAGCACAACCAAATGGAGTGGTGGAAGTGTCTGGTGAAAGGTGATCCTGAGATCGACACTCACAAGGTTGAGCCTGAGCCCAGCAAATTGTCTGAACTGGATTCTGAAATGCGCCGGACTGTTGAAAAGATGATGTTTGATCAGAGACAGAAGCAGTTGGGGCTCCCCACTAGCGAGGAGATTGAAAAAGAAGAAATGTTAAAGAAGCTCATGTCTGAGCATCCGGAGATGGATTTCTCAAGGGCCAAGAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

335

Amino Acids

39.38

Weight (kDa)

6.29

Isoelectric Point (pI)

70.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	175 - 250	4.5e-21	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	151
AccI	GTMKAC	1 cut(s)	197
AccII	CGCG	2 cut(s)	209, 325
AccIII	TCCGGA	1 cut(s)	970
AciI	CCGC	8 cut(s)	31, 85, 207, 325, 416, 428, 434, 578
AclWI	GGATC	2 cut(s)	726, 785
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	4 cut(s)	316, 533, 650, 662
AcyI	GRCGYC	2 cut(s)	152, 176
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	1 cut(s)	503
AgsI	TTSAA	3 cut(s)	286, 872, 932
AjnI	CCWGG	3 cut(s)	33, 135, 580
AluBI	AGCT	3 cut(s)	439, 597, 955
AluI	AGCT	3 cut(s)	439, 597, 955
Alw26I	GTCTC	3 cut(s)	99, 736, 886
AlwI	GGATC	2 cut(s)	726, 785
Ama87I	CYCGRG	2 cut(s)	155, 267
Aor13HI	TCCGGA	1 cut(s)	970
AoxI	GGCC	1 cut(s)	990
ApeKI	GCWGC	1 cut(s)	649
ApoI	RAATTY	1 cut(s)	257
AseI	ATTAAT	1 cut(s)	558
AspLEI	GCGC	5 cut(s)	154, 319, 325, 330, 861
AspS9I	GGNCC	1 cut(s)	990
AsuHPI	GGTGA	4 cut(s)	196, 463, 793, 800
AsuII	TTCGAA	1 cut(s)	170
AvaI	CYCGRG	2 cut(s)	155, 267
BanI	GGYRCC	1 cut(s)	151
BanII	GRGCYC	2 cut(s)	828, 912
BauI	CACGAG	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	254
BbvCI	CCTCAGC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	661
BccI	CCATC	2 cut(s)	659, 970
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	3 cut(s)	35, 137, 582
BclI	TGATCA	1 cut(s)	886
BcoDI	GTCTC	3 cut(s)	99, 736, 886
BfaI	CTAG	2 cut(s)	594, 918
BfoI	RGCGCY	2 cut(s)	155, 331
BisI	GCNGC	3 cut(s)	326, 578, 650
BlsI	GCNGC	3 cut(s)	327, 579, 651
BmcAI	AGTACT	1 cut(s)	530
Bme1390I	CCNGG	3 cut(s)	35, 137, 582
BmeT110I	CYCGRG	2 cut(s)	155, 267
BmgT120I	GGNCC	1 cut(s)	990
BmiI	GGNNCC	3 cut(s)	153, 227, 911
BmrFI	CCNGG	3 cut(s)	35, 137, 582
BmsI	GCATC	1 cut(s)	976
BpiI	GAAGAC	1 cut(s)	254
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpmI	CTGGAG	1 cut(s)	727
Bpu10I	CCTNAGC	2 cut(s)	440, 822
Bpu14I	TTCGAA	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	970
BsaHI	GRCGYC	2 cut(s)	152, 176
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	970
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse1I	ACTGG	3 cut(s)	519, 710, 849
BseAI	TCCGGA	1 cut(s)	970
BseBI	CCWGG	3 cut(s)	35, 137, 582
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	3 cut(s)	132, 466, 967
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMII	CTCAG	5 cut(s)	431, 459, 786, 813, 954
BseNI	ACTGG	3 cut(s)	519, 710, 849
BseXI	GCAGC	1 cut(s)	661
BseYI	CCCAGC	1 cut(s)	827
Bsh1236I	CGCG	2 cut(s)	209, 325
BshFI	GGCC	1 cut(s)	992
BshNI	GGYRCC	1 cut(s)	151
BsiHKCI	CYCGRG	2 cut(s)	155, 267
BsiSI	CCGG	2 cut(s)	862, 971
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmAI	GTCTC	3 cut(s)	99, 736, 886
BsnI	GGCC	1 cut(s)	992
BsoBI	CYCGRG	2 cut(s)	155, 267
Bsp119I	TTCGAA	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	828, 912
Bsp13I	TCCGGA	1 cut(s)	970
Bsp143I	GATC	8 cut(s)	105, 217, 612, 657, 718, 790, 798, 886
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	8 cut(s)	31, 85, 207, 325, 416, 428, 434, 578
BspANI	GGCC	1 cut(s)	992
BspCNI	CTCAG	5 cut(s)	432, 460, 787, 814, 955
BspEI	TCCGGA	1 cut(s)	970
BspFNI	CGCG	2 cut(s)	209, 325
BspLI	GGNNCC	3 cut(s)	153, 227, 911
BspPI	GGATC	2 cut(s)	726, 785
BspQI	GCTCTTC	1 cut(s)	135
BspT104I	TTCGAA	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	151
BsrI	ACTGG	3 cut(s)	519, 710, 849
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	8 cut(s)	105, 217, 612, 657, 718, 790, 798, 886
BssNAI	GTATAC	1 cut(s)	198
BssNI	GRCGYC	2 cut(s)	152, 176
BssSI	CACGAG	1 cut(s)	532
BssT1I	CCWWGG	1 cut(s)	114
Bst1107I	GTATAC	1 cut(s)	198
Bst2BI	CACGAG	1 cut(s)	532
Bst2UI	CCWGG	3 cut(s)	35, 137, 582
Bst4CI	ACNGT	1 cut(s)	868
Bst6I	CTCTTC	3 cut(s)	135, 368, 387
BstACI	GRCGYC	2 cut(s)	152, 176
BstBI	TTCGAA	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	5 cut(s)	440, 468, 795, 822, 963
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	3 cut(s)	132, 466, 967
BstFNI	CGCG	2 cut(s)	209, 325
BstH2I	RGCGCY	2 cut(s)	155, 331
BstHHI	GCGC	5 cut(s)	154, 319, 325, 330, 861
BstKTI	GATC	8 cut(s)	108, 220, 615, 660, 721, 793, 801, 889
BstMAI	GTCTC	3 cut(s)	99, 736, 886
BstMBI	GATC	8 cut(s)	105, 217, 612, 657, 718, 790, 798, 886
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 325, 907
BstNI	CCWGG	3 cut(s)	35, 137, 582
BstSCI	CCNGG	3 cut(s)	33, 135, 580
BstUI	CGCG	2 cut(s)	209, 325
BstV1I	GCAGC	1 cut(s)	661
BstV2I	GAAGAC	1 cut(s)	254
BstZ17I	GTATAC	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	992
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	3 cut(s)	132, 466, 967
Cac8I	GCNNGC	1 cut(s)	321
CfoI	GCGC	5 cut(s)	154, 319, 325, 330, 861
Cfr13I	GGNCC	1 cut(s)	990
CseI	GACGC	2 cut(s)	165, 547
Csp6I	GTAC	1 cut(s)	529
CspCI	CAANNNNNGTGG	2 cut(s)	746, 781
CviAII	CATG	3 cut(s)	115, 572, 958
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	5 cut(s)	440, 468, 795, 822, 963
DinI	GGCGCC	1 cut(s)	153
DpnI	GATC	8 cut(s)	107, 219, 614, 659, 720, 792, 800, 888
DpnII	GATC	8 cut(s)	105, 217, 612, 657, 718, 790, 798, 886
Eam1104I	CTCTTC	3 cut(s)	135, 368, 387
EarI	CTCTTC	3 cut(s)	135, 368, 387
EciI	GGCGGA	4 cut(s)	20, 431, 443, 449
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	2 cut(s)	828, 912
Eco57I	CTGAAG	4 cut(s)	316, 533, 650, 662
Eco88I	CYCGRG	2 cut(s)	155, 267
EcoRII	CCWGG	3 cut(s)	33, 135, 580
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	2 cut(s)	828, 912
EgeI	GGCGCC	1 cut(s)	153
EheI	GGCGCC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	3 cut(s)	118, 575, 961
FaiI	YATR	6 cut(s)	45, 116, 198, 573, 713, 959
FatI	CATG	3 cut(s)	114, 571, 957
FbaI	TGATCA	1 cut(s)	886
FblI	GTMKAC	1 cut(s)	197
Fnu4HI	GCNGC	3 cut(s)	326, 578, 650
FokI	GGATG	3 cut(s)	119, 473, 954
FriOI	GRGCYC	2 cut(s)	828, 912
Fsp4HI	GCNGC	3 cut(s)	326, 578, 650
FspBI	CTAG	2 cut(s)	594, 918
GlaI	GCGC	5 cut(s)	153, 318, 324, 329, 860
GluI	GCNGC	3 cut(s)	326, 578, 650
GsaI	CCCAGC	1 cut(s)	831
GsuI	CTGGAG	1 cut(s)	727
HaeII	RGCGCY	2 cut(s)	155, 331
HaeIII	GGCC	1 cut(s)	992
HapII	CCGG	2 cut(s)	862, 971
HgaI	GACGC	2 cut(s)	165, 547
HhaI	GCGC	5 cut(s)	154, 319, 325, 330, 861
Hin1I	GRCGYC	2 cut(s)	152, 176
Hin1II	CATG	3 cut(s)	118, 575, 961
Hin6I	GCGC	5 cut(s)	152, 317, 323, 328, 859
HinP1I	GCGC	5 cut(s)	152, 317, 323, 328, 859
HinfI	GANTC	6 cut(s)	13, 81, 110, 293, 622, 848
HpaII	CCGG	2 cut(s)	862, 971
HphI	GGTGA	4 cut(s)	196, 463, 793, 800
Hpy166II	GTNNAC	2 cut(s)	198, 537
Hpy188III	TCNNGA	6 cut(s)	269, 286, 551, 616, 794, 971
Hpy8I	GTNNAC	2 cut(s)	198, 537
Hpy99I	CGWCG	4 cut(s)	181, 187, 190, 301
HpyAV	CCTTC	8 cut(s)	166, 177, 211, 400, 418, 557, 625, 637
HpyCH4III	ACNGT	1 cut(s)	868
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	679
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 325, 907
HpyF3I	CTNAG	5 cut(s)	440, 468, 795, 822, 963
HpySE526I	ACGT	1 cut(s)	251
Hsp92I	GRCGYC	2 cut(s)	152, 176
Hsp92II	CATG	3 cut(s)	118, 575, 961
HspAI	GCGC	5 cut(s)	152, 317, 323, 328, 859
KasI	GGCGCC	1 cut(s)	151
Kpn2I	TCCGGA	1 cut(s)	970
Ksp22I	TGATCA	1 cut(s)	886
Kzo9I	GATC	8 cut(s)	105, 217, 612, 657, 718, 790, 798, 886
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	3 cut(s)	436, 708, 915
Lsp1109I	GCAGC	1 cut(s)	661
LweI	GCATC	1 cut(s)	976
MaeI	CTAG	2 cut(s)	594, 918
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	701
MalI	GATC	8 cut(s)	107, 219, 614, 659, 720, 792, 800, 888
MboI	GATC	8 cut(s)	105, 217, 612, 657, 718, 790, 798, 886
MhlI	GDGCHC	2 cut(s)	828, 912
MluCI	AATT	3 cut(s)	257, 735, 833
Mly113I	GGCGCC	1 cut(s)	152
MlyI	GAGTC	2 cut(s)	75, 302
MmeI	TCCRAC	4 cut(s)	153, 234, 279, 616
MroI	TCCGGA	1 cut(s)	970
MseI	TTAA	4 cut(s)	89, 488, 558, 947
MspI	CCGG	2 cut(s)	862, 971
MspR9I	CCNGG	3 cut(s)	35, 137, 582
MteI	GCGCNGCGC	1 cut(s)	326
MvaI	CCWGG	3 cut(s)	35, 137, 582
MvnI	CGCG	2 cut(s)	209, 325
MwoI	GCNNNNNNNGC	3 cut(s)	151, 325, 907
NarI	GGCGCC	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	8 cut(s)	105, 217, 612, 657, 718, 790, 798, 886
NlaIII	CATG	3 cut(s)	118, 575, 961
NlaIV	GGNNCC	3 cut(s)	153, 227, 911
NspV	TTCGAA	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PfeI	GAWTC	4 cut(s)	13, 110, 622, 848
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	3 cut(s)	327, 579, 651
PleI	GAGTC	2 cut(s)	75, 301
PluTI	GGCGCC	1 cut(s)	155
PpsI	GAGTC	2 cut(s)	75, 301
PshBI	ATTAAT	1 cut(s)	558
Psp6I	CCWGG	3 cut(s)	33, 135, 580
PspFI	CCCAGC	1 cut(s)	827
PspGI	CCWGG	3 cut(s)	33, 135, 580
PspN4I	GGNNCC	3 cut(s)	153, 227, 911
PspPI	GGNCC	1 cut(s)	990
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	4 cut(s)	89, 488, 558, 947
SatI	GCNGC	3 cut(s)	326, 578, 650
Sau3AI	GATC	8 cut(s)	105, 217, 612, 657, 718, 790, 798, 886
Sau96I	GGNCC	1 cut(s)	990
ScaI	AGTACT	1 cut(s)	530
SchI	GAGTC	2 cut(s)	75, 302
ScrFI	CCNGG	3 cut(s)	35, 137, 582
SduI	GDGCHC	2 cut(s)	828, 912
SfaNI	GCATC	1 cut(s)	976
SfoI	GGCGCC	1 cut(s)	153
SfuI	TTCGAA	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	985
SmoI	CTYRAG	1 cut(s)	985
Sse9I	AATT	3 cut(s)	257, 735, 833
SsiI	CCGC	8 cut(s)	31, 85, 207, 325, 416, 428, 434, 578
SspDI	GGCGCC	1 cut(s)	151
SspMI	CTAG	2 cut(s)	594, 918
StyD4I	CCNGG	3 cut(s)	33, 135, 580
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	868
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	7 cut(s)	61, 69, 75, 108, 170, 188, 801
TasI	AATT	3 cut(s)	257, 735, 833
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	2 cut(s)	328, 580
TfiI	GAWTC	4 cut(s)	13, 110, 622, 848
Tru1I	TTAA	4 cut(s)	89, 488, 558, 947
Tru9I	TTAA	4 cut(s)	89, 488, 558, 947
TseI	GCWGC	1 cut(s)	649
TspDTI	ATGAA	1 cut(s)	477
VspI	ATTAAT	1 cut(s)	558
XapI	RAATTY	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	197
XspI	CTAG	2 cut(s)	594, 918
ZrmI	AGTACT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.