Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003348

Physical Location & Seq

Genomic Coordinates Reverse (-)

2375043 .. 2381091

Gene Structure 6049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g01870.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCGATGCATAGATTATTCTCCAAGCTTCGCTCTTTCTCTGTGCACTCAGCCCAAACTCTCCCATCATCTCTCTCTTCTCCTTCATTGCATCGGTCTTGCCCTCCGCTGCTTCACCAGCCTCTCCCTTTCGCATCAATTGATAACAGACGGATCGTCAGGTCCCTTTTCAGTGCCCATTCACCGACCCAACCTTCACTGGCTGTCACTGCTCTTCGCTCCTCACCATTCCCTTTCCCGATGGTTCAAGTGCGGCATGTTTCGTCAAGGGAGCGTAAGAAGAGGAGAAAGCCGATGACTCCAGTCACATCCAAGTTAAAGAAAACCAAAATGAAGTCTTACTCGTCGTACAAGTCCCGGTTTAGGACAATGAATGATGGGACTATTCGGCGGTGGAGGGCGGGCAAGCGGCACAATGCCCATTCGAAGTCGAAGATATCTAAGCGTAGACTCAGAGTGCCAGCCCTTGTCCATCCTGCTTATGCTACAGTGATGAAGAAGCTCAATTTTTGCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

173

Amino Acids

19.7

Weight (kDa)

12.0

Isoelectric Point (pI)

85.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45590
fragaria_vesca	FvH4_5g23590 FvH4_5g23590 FvH4_5g23590
malus_domestica	MD00G1000200.v1.1 MD06G1023100.v1.1
prunus_persica	Prupe.5G024300_v2.0.a1
pyrus_communis	pycom06g01870 pycom16g25360
rosa_chinensis	RchiOBHm_Chr1g0382651 RchiOBHm_Chr7g0212891
rosa_laevigata	RLG00000000943 RLG00000002859 RLG00000034251
rosa_multiflora	Rmu_sc0001355.1_g000007 Rmu_sc0006862.1_g000004
rosa_roxburghii	Rroxscaffold_3G00246450 Rroxscaffold_6G00416720 Rroxscaffold_7G00181750
rosa_rugosa	Rorug07G0137300 Rorug07G0137400
rosa_samantha	Rh1BG416900 Rh1DG449100 Rh6CG309300 Rh6CG309400 Rh6CG310300 Rh6CG375100 Rh6DG293900 Rh7AG269000 Rh7BG264600 Rh7CG288200 Rh7DG277200 Rh7DG475900
rosa_wichuraiana	Rw1G041140 Rw7G023370 Rw7G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	448
AciI	CCGC	6 cut(s)	107, 253, 391, 401, 409, 513
AclWI	GGATC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	248
AhdI	GACNNNNNGTC	1 cut(s)	155
AluBI	AGCT	2 cut(s)	28, 502
AluI	AGCT	2 cut(s)	28, 502
Alw21I	GWGCWC	1 cut(s)	48
Alw44I	GTGCAC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	161
ApaLI	GTGCAC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	3 cut(s)	107, 174, 216
AsuII	TTCGAA	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	162
BaeGI	GKGCMC	2 cut(s)	48, 178
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	4 cut(s)	73, 235, 371, 480
BcnI	CCSGG	1 cut(s)	358
BfmI	CTRYAG	1 cut(s)	486
BisI	GCNGC	3 cut(s)	110, 254, 410
BlsI	GCNGC	3 cut(s)	111, 255, 411
Bme1390I	CCNGG	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	162
BmeRI	GACNNNNNGTC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	358
BmsI	GCATC	2 cut(s)	100, 143
BoxI	GACNNNNGTC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	425
BpuMI	CCSGG	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse1I	ACTGG	2 cut(s)	204, 302
Bse3DI	GCAATG	1 cut(s)	86
BseGI	GGATG	2 cut(s)	308, 472
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMI	GCAATG	1 cut(s)	86
BseMII	CTCAG	2 cut(s)	63, 466
BseNI	ACTGG	2 cut(s)	204, 302
BseRI	GAGGAG	2 cut(s)	211, 298
BseSI	GKGCMC	2 cut(s)	48, 178
BseXI	GCAGC	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	358
BslFI	GGGAC	3 cut(s)	148, 340, 394
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmFI	GGGAC	3 cut(s)	148, 340, 394
Bsp119I	TTCGAA	1 cut(s)	425
Bsp1286I	GDGCHC	2 cut(s)	48, 178
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	6 cut(s)	107, 253, 391, 401, 409, 513
BspCNI	CTCAG	2 cut(s)	62, 465
BspLI	GGNNCC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	161
BspQI	GCTCTTC	1 cut(s)	219
BspT104I	TTCGAA	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	204, 302
BssMI	GATC	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	3 cut(s)	82, 219, 275
BstBI	TTCGAA	1 cut(s)	425
BstC8I	GCNNGC	3 cut(s)	403, 407, 462
BstDEI	CTNAG	3 cut(s)	49, 441, 452
BstF5I	GGATG	2 cut(s)	308, 472
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 209
BstNSI	RCATGY	1 cut(s)	260
BstPAI	GACNNNNGTC	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	486
BstSLI	GKGCMC	2 cut(s)	48, 178
BstV1I	GCAGC	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	308, 472
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	4 cut(s)	178, 197, 207, 495
Cac8I	GCNNGC	3 cut(s)	403, 407, 462
Cfr13I	GGNCC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	7 cut(s)	28, 53, 121, 203, 292, 464, 502
CviKI_1	RGCY	7 cut(s)	28, 53, 121, 203, 292, 464, 502
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	3 cut(s)	49, 441, 452
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
DriI	GACNNNNNGTC	1 cut(s)	155
Eam1104I	CTCTTC	3 cut(s)	82, 219, 275
Eam1105I	GACNNNNNGTC	1 cut(s)	155
EarI	CTCTTC	3 cut(s)	82, 219, 275
Eco32I	GATATC	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRV	GATATC	1 cut(s)	438
EcoT22I	ATGCAT	1 cut(s)	12
FaeI	CATG	1 cut(s)	260
FaiI	YATR	3 cut(s)	12, 258, 483
FaqI	GGGAC	3 cut(s)	148, 340, 394
FatI	CATG	1 cut(s)	256
FauI	CCCGC	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	3 cut(s)	110, 254, 410
FokI	GGATG	2 cut(s)	295, 459
Fsp4HI	GCNGC	3 cut(s)	110, 254, 410
GluI	GCNGC	3 cut(s)	110, 254, 410
GsuI	CTGGAG	1 cut(s)	285
HapII	CCGG	1 cut(s)	358
Hin1II	CATG	1 cut(s)	260
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	2 cut(s)	298, 450
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	3 cut(s)	107, 174, 216
Hpy166II	GTNNAC	2 cut(s)	46, 449
Hpy188I	TCNGA	1 cut(s)	455
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	2 cut(s)	46, 449
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	2 cut(s)	93, 204
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4V	TGCA	3 cut(s)	10, 46, 91
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 209
HpyF3I	CTNAG	3 cut(s)	49, 441, 452
Hsp92II	CATG	1 cut(s)	260
Kzo9I	GATC	1 cut(s)	153
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	2 cut(s)	224, 271
LpnPI	CCDG	7 cut(s)	131, 145, 185, 315, 371, 474, 489
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	2 cut(s)	100, 143
MaeIII	GTNAC	2 cut(s)	205, 304
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	5 cut(s)	69, 206, 292, 445, 508
MfeI	CAATTG	1 cut(s)	138
MhlI	GDGCHC	2 cut(s)	48, 178
MluCI	AATT	2 cut(s)	138, 505
MlyI	GAGTC	2 cut(s)	292, 444
MnlI	CCTC	5 cut(s)	114, 132, 232, 276, 390
Mph1103I	ATGCAT	1 cut(s)	12
MseI	TTAA	2 cut(s)	317, 517
MspA1I	CMGCKG	1 cut(s)	109
MspI	CCGG	1 cut(s)	358
MspR9I	CCNGG	1 cut(s)	358
MunI	CAATTG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	118, 209
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	2 cut(s)	205, 304
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	1 cut(s)	260
NspV	TTCGAA	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	219
PkrI	GCNGC	3 cut(s)	111, 255, 411
PleI	GAGTC	2 cut(s)	292, 444
PpsI	GAGTC	2 cut(s)	292, 444
PpuMI	RGGWCCY	1 cut(s)	162
PshAI	GACNNNNGTC	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	162
PspPPI	RGGWCCY	1 cut(s)	162
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	317, 517
SatI	GCNGC	3 cut(s)	110, 254, 410
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	2 cut(s)	292, 444
ScrFI	CCNGG	1 cut(s)	358
SduI	GDGCHC	2 cut(s)	48, 178
SetI	ASST	4 cut(s)	30, 164, 196, 504
SfaNI	GCATC	2 cut(s)	100, 143
SfcI	CTRYAG	1 cut(s)	486
SfuI	TTCGAA	1 cut(s)	425
SinI	GGWCC	1 cut(s)	162
Sse9I	AATT	2 cut(s)	138, 505
SsiI	CCGC	6 cut(s)	107, 253, 391, 401, 409, 513
StyD4I	CCNGG	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	490
TaqI	TCGA	2 cut(s)	425, 431
TaqII	GACCGA	1 cut(s)	84
TasI	AATT	2 cut(s)	138, 505
TauI	GCSGC	2 cut(s)	256, 412
Tru1I	TTAA	2 cut(s)	317, 517
Tru9I	TTAA	2 cut(s)	317, 517
TscAI	CASTG	4 cut(s)	178, 204, 214, 495
TseFI	GTSAC	2 cut(s)	205, 304
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	2 cut(s)	205, 304
TspDTI	ATGAA	4 cut(s)	75, 347, 386, 509
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	4 cut(s)	178, 204, 214, 495
VneI	GTGCAC	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	162
XceI	RCATGY	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	448
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.