Rh1BG416900

Ribosomal protein L35

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003348
Physical Location & Seq
Reverse (-)
53876308 .. 53877761
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG416900.1

Sequence Viewer

Length: 561 bp
ATGACACCAGTTACTTCCAAGATAAAGAAATACAAAATCAAGGGTTACTCGTCTTACAAGTCCCGGTTTAAGTTATTGAATGATGGCACTATTCGACGCTGGAGGGAGGGCAAGTGGCACAATGCACATCTGAAGATACAAATAGCAGGAGTTGTAAACTATTTTCCGAGTTGCAGCAGCAAGGAATTTCTTATAAAGCTACCGAGTGATGGTGTCTCGGCAATAATAACTAATAAGCTACCTCCCGGATTGTTTCAATACCGCAATGTTCGGACTGCAAAAATTGGCAAAGTTGGAATCTGCCAACCCATTTGCTGTGCACAATTCGGAGAGAGTGTTTTGAGACTTGATGACGAATTCACGGAGGTTAACAGAGTTCAACTGTCGACTAATAAGCTAAACAGGGATGCAGCAGTTGATGTATTAGGGAGGGTGGAGAGGGATGTGGTAGTCGGAAATCATTTTGGGGAGCTAATGGGAGCAATGGCTTGTTCTTGGGAGAGTAGGGAGGGTGGTCTTGTTTCTGCAACTCAGTTTGGGTTTTCAAGAACTTGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L35p

Protein Analysis

186

Amino Acids

20.81

Weight (kDa)

9.64

Isoelectric Point (pI)

25.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AccI GTMKAC 1 cut(s) 386
AciI CCGC 1 cut(s) 262
AcsI RAATTY 2 cut(s) 185, 356
AcuI CTGAAG 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 4 cut(s) 79, 257, 380, 546
AluBI AGCT 4 cut(s) 199, 238, 397, 472
AluI AGCT 4 cut(s) 199, 238, 397, 472
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 2 cut(s) 220, 337
Alw44I GTGCAC 1 cut(s) 318
ApaLI GTGCAC 1 cut(s) 318
ApeKI GCWGC 3 cut(s) 174, 177, 410
ApoI RAATTY 2 cut(s) 185, 356
AsuC2I CCSGG 2 cut(s) 64, 246
BaeGI GKGCMC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 3 cut(s) 186, 189, 422
BccI CCATC 2 cut(s) 77, 203
BcnI CCSGG 2 cut(s) 64, 246
BcoDI GTCTC 2 cut(s) 220, 337
BisI GCNGC 3 cut(s) 175, 178, 411
BlsI GCNGC 3 cut(s) 176, 179, 412
Bme1390I CCNGG 2 cut(s) 64, 246
BmrFI CCNGG 2 cut(s) 64, 246
BmsI GCATC 1 cut(s) 397
BpmI CTGGAG 1 cut(s) 121
BpuMI CCSGG 2 cut(s) 64, 246
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 321, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 8
Bse3DI GCAATG 2 cut(s) 271, 489
BseGI GGATG 2 cut(s) 412, 448
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMI GCAATG 2 cut(s) 271, 489
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 1 cut(s) 8
BseSI GKGCMC 1 cut(s) 322
BseXI GCAGC 3 cut(s) 186, 189, 422
BsiHKAI GWGCWC 1 cut(s) 322
BsiSI CCGG 2 cut(s) 64, 246
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 209
BsmAI GTCTC 2 cut(s) 220, 337
BsmFI GGGAC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 322
BspACI CCGC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 544
BsrDI GCAATG 2 cut(s) 271, 489
BsrI ACTGG 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 384
BstDEI CTNAG 1 cut(s) 531
BstF5I GGATG 2 cut(s) 412, 448
BstMAI GTCTC 2 cut(s) 220, 337
BstSCI CCNGG 2 cut(s) 62, 244
BstSLI GKGCMC 1 cut(s) 322
BstV1I GCAGC 3 cut(s) 186, 189, 422
BtsCI GGATG 2 cut(s) 412, 448
CseI GACGC 1 cut(s) 105
CviJI RGCY 5 cut(s) 199, 238, 397, 472, 488
CviKI_1 RGCY 5 cut(s) 199, 238, 397, 472, 488
DdeI CTNAG 1 cut(s) 531
Eco57I CTGAAG 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 356
FaiI YATR 1 cut(s) 194
FaqI GGGAC 1 cut(s) 46
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 3 cut(s) 175, 178, 411
FokI GGATG 2 cut(s) 419, 455
Fsp4HI GCNGC 3 cut(s) 175, 178, 411
GluI GCNGC 3 cut(s) 175, 178, 411
GsuI CTGGAG 1 cut(s) 121
HapII CCGG 2 cut(s) 64, 246
HgaI GACGC 1 cut(s) 105
HincII GTYRAC 2 cut(s) 370, 387
HindII GTYRAC 2 cut(s) 370, 387
HinfI GANTC 1 cut(s) 297
HpaI GTTAAC 1 cut(s) 370
HpaII CCGG 2 cut(s) 64, 246
Hpy166II GTNNAC 4 cut(s) 157, 320, 370, 387
Hpy188I TCNGA 5 cut(s) 132, 168, 273, 329, 455
Hpy188III TCNNGA 1 cut(s) 546
Hpy8I GTNNAC 4 cut(s) 157, 320, 370, 387
Hpy99I CGWCG 1 cut(s) 99
HpyCH4III ACNGT 1 cut(s) 384
HpyCH4V TGCA 6 cut(s) 125, 174, 278, 320, 410, 527
HpyF3I CTNAG 1 cut(s) 531
KspAI GTTAAC 1 cut(s) 370
LmnI GCTCC 2 cut(s) 469, 479
LpnPI CCDG 6 cut(s) 21, 77, 85, 132, 259, 388
Lsp1109I GCAGC 3 cut(s) 186, 189, 422
LweI GCATC 1 cut(s) 397
MaeIII GTNAC 2 cut(s) 10, 44
MboII GAAGA 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 5 cut(s) 185, 282, 323, 356, 556
MmeI TCCRAC 2 cut(s) 274, 433
MnlI CCTC 7 cut(s) 96, 100, 252, 358, 423, 432, 502
MseI TTAA 2 cut(s) 69, 369
MspI CCGG 2 cut(s) 64, 246
MspR9I CCNGG 2 cut(s) 64, 246
NciI CCSGG 2 cut(s) 64, 246
NmeAIII GCCGAG 1 cut(s) 197
PfeI GAWTC 1 cut(s) 297
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 3 cut(s) 176, 179, 412
PsiI TTATAA 1 cut(s) 194
SalI GTCGAC 1 cut(s) 385
SaqAI TTAA 2 cut(s) 69, 369
SatI GCNGC 3 cut(s) 175, 178, 411
ScrFI CCNGG 2 cut(s) 64, 246
SduI GDGCHC 1 cut(s) 322
SetI ASST 6 cut(s) 201, 240, 244, 369, 399, 474
SfaNI GCATC 1 cut(s) 397
Sse9I AATT 5 cut(s) 185, 282, 323, 356, 556
SsiI CCGC 1 cut(s) 262
StyD4I CCNGG 2 cut(s) 62, 244
TaaI ACNGT 1 cut(s) 384
TaqI TCGA 2 cut(s) 94, 386
TasI AATT 5 cut(s) 185, 282, 323, 356, 556
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 2 cut(s) 69, 369
Tru9I TTAA 2 cut(s) 69, 369
TseI GCWGC 3 cut(s) 174, 177, 410
TspGWI ACGGA 1 cut(s) 377
VneI GTGCAC 1 cut(s) 318
XapI RAATTY 2 cut(s) 185, 356
XmiI GTMKAC 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.