Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003348

Physical Location & Seq

Genomic Coordinates Forward (+)

20821090 .. 20824173

Gene Structure 3084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00181750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCGGCGGAGAAACCGTTCAAGAGTATATCGAAATCGCTTGAGAAGCCGGACGGCGGCGGGTTCGGAAAGTACTACAGCTTGCCAGCTCTCAATGATCCTAGGGTCGATAAGCTACCGTACTCCATTAAGATCCTTCTTGAGTCTGCAATCTACAACTGCCAAGAGTTTCAGGTTAAGAGTACGTCTTACAAGTCCCGGTTTAAGTTATTGAATGATGGCACTATTCGATGCTGGAGGGAGGGCAAGCGGCACAATGCACATCTGAAGAGATGGCCCAGGAGCTCGAAAGCGAAATTCGAGTGTGTGTTTAGTGAAGTTGGTGTTGTTAAAGAAGATGGGTTTTCGATGCCTGTGAACCCTGCAGCCAAGAAACCCTGGGTCATTGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003994 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006101 GO:0006102 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0016999 GO:0017144 GO:0019752 GO:0030054 GO:0031667 GO:0042594 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048027 GO:0048046 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:0072350 GO:0097159 GO:1901363 GO:1990641

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aconitase Aconitase_C

Protein Analysis

131

Amino Acids

14.89

Weight (kDa)

9.71

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45590
fragaria_vesca	FvH4_5g23590 FvH4_5g23590 FvH4_5g23590
malus_domestica	MD00G1000200.v1.1 MD06G1023100.v1.1
prunus_persica	Prupe.5G024300_v2.0.a1
pyrus_communis	pycom06g01870 pycom16g25360
rosa_chinensis	RchiOBHm_Chr1g0382651 RchiOBHm_Chr7g0212891
rosa_laevigata	RLG00000000943 RLG00000002859 RLG00000034251
rosa_multiflora	Rmu_sc0001355.1_g000007 Rmu_sc0006862.1_g000004
rosa_roxburghii	Rroxscaffold_3G00246450 Rroxscaffold_6G00416720 Rroxscaffold_7G00181750
rosa_rugosa	Rorug07G0137300 Rorug07G0137400
rosa_samantha	Rh1BG416900 Rh1DG449100 Rh6CG309300 Rh6CG309400 Rh6CG310300 Rh6CG375100 Rh6DG293900 Rh7AG269000 Rh7BG264600 Rh7CG288200 Rh7DG277200 Rh7DG475900
rosa_wichuraiana	Rw1G041140 Rw7G023370 Rw7G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 8, 57, 60, 250
AclWI	GGATC	2 cut(s)	92, 127
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	3 cut(s)	74, 122, 184
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	22, 214
AjnI	CCWGG	2 cut(s)	278, 377
AloI	GAACNNNNNNTCC	1 cut(s)	34
AluBI	AGCT	4 cut(s)	81, 89, 115, 285
AluI	AGCT	4 cut(s)	81, 89, 115, 285
Alw21I	GWGCWC	1 cut(s)	287
AlwI	GGATC	2 cut(s)	92, 127
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	17
AspA2I	CCTAGG	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	276
AsuC2I	CCSGG	1 cut(s)	199
AvrII	CCTAGG	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	3 cut(s)	212, 267, 332
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	2 cut(s)	280, 379
BcnI	CCSGG	1 cut(s)	199
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	2 cut(s)	76, 363
BisI	GCNGC	4 cut(s)	6, 58, 251, 366
BlnI	CCTAGG	1 cut(s)	101
BlsI	GCNGC	4 cut(s)	7, 59, 252, 367
BmcAI	AGTACT	1 cut(s)	74
Bme1390I	CCNGG	3 cut(s)	199, 280, 379
BmgT120I	GGNCC	1 cut(s)	276
BmrFI	CCNGG	3 cut(s)	199, 280, 379
BmsI	GCATC	2 cut(s)	221, 339
BpmI	CTGGAG	1 cut(s)	256
BpuEI	CTTGAG	2 cut(s)	62, 161
BpuMI	CCSGG	1 cut(s)	199
BsaJI	CCNNGG	4 cut(s)	101, 278, 377, 378
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
BseBI	CCWGG	2 cut(s)	280, 379
BseDI	CCNNGG	4 cut(s)	101, 278, 377, 378
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	377
BshFI	GGCC	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	50, 199
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	97, 132
BspACI	CCGC	5 cut(s)	5, 8, 57, 60, 250
BspANI	GGCC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	2 cut(s)	92, 127
BssECI	CCNNGG	4 cut(s)	101, 278, 377, 378
BssMI	GATC	2 cut(s)	97, 132
BssT1I	CCWWGG	1 cut(s)	101
Bst2UI	CCWGG	2 cut(s)	280, 379
Bst4CI	ACNGT	2 cut(s)	18, 120
Bst6I	CTCTTC	1 cut(s)	263
BstC8I	GCNNGC	3 cut(s)	83, 87, 248
BstKTI	GATC	2 cut(s)	100, 135
BstMBI	GATC	2 cut(s)	97, 132
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	2 cut(s)	280, 379
BstSCI	CCNGG	3 cut(s)	197, 278, 377
BstSFI	CTRYAG	2 cut(s)	76, 363
BstV1I	GCAGC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	277
Cac8I	GCNNGC	3 cut(s)	83, 87, 248
Cfr13I	GGNCC	1 cut(s)	276
Csp6I	GTAC	3 cut(s)	73, 121, 183
CviJI	RGCY	7 cut(s)	49, 81, 89, 115, 277, 285, 368
CviKI_1	RGCY	7 cut(s)	49, 81, 89, 115, 277, 285, 368
CviQI	GTAC	3 cut(s)	73, 121, 183
DpnI	GATC	2 cut(s)	99, 134
DpnII	GATC	2 cut(s)	97, 132
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	285
EcoRII	CCWGG	2 cut(s)	278, 377
EcoT14I	CCWWGG	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	101
FaiI	YATR	2 cut(s)	29, 394
FaqI	GGGAC	1 cut(s)	181
FauI	CCCGC	1 cut(s)	53
Fnu4HI	GCNGC	4 cut(s)	6, 58, 251, 366
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	4 cut(s)	6, 58, 251, 366
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	4 cut(s)	6, 58, 251, 366
GsuI	CTGGAG	1 cut(s)	256
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	2 cut(s)	50, 199
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	2 cut(s)	50, 199
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	2 cut(s)	68, 267
Hpy188III	TCNNGA	2 cut(s)	22, 140
Hpy8I	GTNNAC	1 cut(s)	358
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	2 cut(s)	18, 120
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	3 cut(s)	149, 260, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	185
Kzo9I	GATC	2 cut(s)	97, 132
LmnI	GCTCC	1 cut(s)	282
Lsp1109I	GCAGC	1 cut(s)	377
LweI	GCATC	2 cut(s)	221, 339
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	185
MalI	GATC	2 cut(s)	99, 134
MboI	GATC	2 cut(s)	97, 132
MboII	GAAGA	2 cut(s)	280, 347
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	2 cut(s)	231, 235
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	4 cut(s)	129, 177, 204, 330
MspI	CCGG	2 cut(s)	50, 199
MspR9I	CCNGG	3 cut(s)	199, 280, 379
MvaI	CCWGG	2 cut(s)	280, 379
MwoI	GCNNNNNNNGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	199
NdeII	GATC	2 cut(s)	97, 132
PasI	CCCWGGG	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	17
PkrI	GCNGC	4 cut(s)	7, 59, 252, 367
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	278, 377
PspGI	CCWGG	2 cut(s)	278, 377
PspPI	GGNCC	1 cut(s)	276
PstI	CTGCAG	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	3 cut(s)	74, 122, 184
RsaNI	GTAC	3 cut(s)	73, 121, 183
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	4 cut(s)	129, 177, 204, 330
SatI	GCNGC	4 cut(s)	6, 58, 251, 366
Sau3AI	GATC	2 cut(s)	97, 132
Sau96I	GGNCC	1 cut(s)	276
ScaI	AGTACT	1 cut(s)	74
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	3 cut(s)	199, 280, 379
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	6 cut(s)	83, 91, 117, 177, 188, 287
SfaNI	GCATC	2 cut(s)	221, 339
SfcI	CTRYAG	2 cut(s)	76, 363
SmlI	CTYRAG	2 cut(s)	41, 140
SmoI	CTYRAG	2 cut(s)	41, 140
Sse9I	AATT	1 cut(s)	296
SsiI	CCGC	5 cut(s)	5, 8, 57, 60, 250
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	287
StyD4I	CCNGG	3 cut(s)	197, 278, 377
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	2 cut(s)	18, 120
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	6 cut(s)	32, 108, 229, 287, 300, 347
TasI	AATT	1 cut(s)	296
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	3 cut(s)	8, 60, 253
Tru1I	TTAA	4 cut(s)	129, 177, 204, 330
Tru9I	TTAA	4 cut(s)	129, 177, 204, 330
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	1 cut(s)	381
XapI	RAATTY	1 cut(s)	296
XmaJI	CCTAGG	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	1 cut(s)	102
ZrmI	AGTACT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.