RchiOBHm_Chr1g0382651

Ribosomal protein L35

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003348
Physical Location & Seq
Reverse (-)
67400256 .. 67403742
3487 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60561

Sequence Viewer

Length: 339 bp
ATGACACCAGTTACTTCCAAGATAAAGAAATACAAAATCAAGGGTTACTCGTCTTACAAGTCCCGGTTTAAGTTATTGAATGATGGTACTATTCGACGCTGGAGGGAGGGCAAGTGGCACAATGCACATCTGAAGCAGCTGCATGTGACAAAATCAAATGATGAGCTGCAATGTAAGGCTCAGTTTGTGAAATCCCAGCTGTGCAATTTCCATCAGCTTTGGAGCACCGTGCCGGAGGATTCATCCCATTGTCATGGCAGAGCAACCACCACTCCAGGCTCTTTGAATGTCATCCGGTTCTTCACTTTCCCAGTACCATCGATAGACATCAAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L35p

Protein Analysis

112

Amino Acids

13.02

Weight (kDa)

10.02

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L35p PF01632 11 - 45 3.2e-06 Ribosomal protein L35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 2 cut(s) 88, 315
AgsI TTSAA 2 cut(s) 79, 286
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 4 cut(s) 139, 166, 199, 217
AluI AGCT 4 cut(s) 139, 166, 199, 217
Alw21I GWGCWC 1 cut(s) 227
ApeKI GCWGC 3 cut(s) 136, 139, 166
ApoI RAATTY 1 cut(s) 333
AsuC2I CCSGG 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 3 cut(s) 126, 148, 153
BccI CCATC 3 cut(s) 77, 219, 325
BciT130I CCWGG 1 cut(s) 276
BcnI CCSGG 1 cut(s) 64
BisI GCNGC 3 cut(s) 137, 140, 167
BlsI GCNGC 3 cut(s) 138, 141, 168
Bme1390I CCNGG 2 cut(s) 64, 276
BmrFI CCNGG 2 cut(s) 64, 276
BmrI ACTGGG 1 cut(s) 305
BmuI ACTGGG 1 cut(s) 305
BpmI CTGGAG 2 cut(s) 121, 258
BpuMI CCSGG 1 cut(s) 64
Bsa29I ATCGAT 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 326
BsaWI WCCGGW 1 cut(s) 294
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 256, 286
Bse1I ACTGG 2 cut(s) 8, 311
Bse3DI GCAATG 1 cut(s) 176
Bse8I GATNNNNATC 1 cut(s) 326
BseBI CCWGG 1 cut(s) 276
BseCI ATCGAT 1 cut(s) 320
BseGI GGATG 2 cut(s) 242, 291
BseJI GATNNNNATC 1 cut(s) 326
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 2 cut(s) 8, 311
BseXI GCAGC 3 cut(s) 126, 148, 153
BseYI CCCAGC 1 cut(s) 195
BshVI ATCGAT 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 227
BsiSI CCGG 3 cut(s) 64, 233, 295
BslFI GGGAC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 193
BspDI ATCGAT 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 176
BsrI ACTGG 2 cut(s) 8, 311
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 242, 291
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 62, 274
BstV1I GCAGC 3 cut(s) 126, 148, 153
BstXI CCANNNNNNTGG 1 cut(s) 254
Bsu15I ATCGAT 1 cut(s) 320
BsuTUI ATCGAT 1 cut(s) 320
BtsCI GGATG 2 cut(s) 242, 291
ClaI ATCGAT 1 cut(s) 320
CseI GACGC 1 cut(s) 105
Csp6I GTAC 2 cut(s) 87, 314
CviAII CATG 2 cut(s) 143, 254
CviJI RGCY 6 cut(s) 139, 166, 179, 199, 217, 279
CviKI_1 RGCY 6 cut(s) 139, 166, 179, 199, 217, 279
CviQI GTAC 2 cut(s) 87, 314
DdeI CTNAG 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 274
FaeI CATG 2 cut(s) 146, 257
FaiI YATR 2 cut(s) 144, 255
FaqI GGGAC 1 cut(s) 46
FatI CATG 2 cut(s) 142, 253
Fnu4HI GCNGC 3 cut(s) 137, 140, 167
FokI GGATG 2 cut(s) 229, 278
Fsp4HI GCNGC 3 cut(s) 137, 140, 167
GluI GCNGC 3 cut(s) 137, 140, 167
GsaI CCCAGC 1 cut(s) 199
GsuI CTGGAG 2 cut(s) 121, 258
HapII CCGG 3 cut(s) 64, 233, 295
HgaI GACGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 146, 257
HinfI GANTC 1 cut(s) 239
HpaII CCGG 3 cut(s) 64, 233, 295
Hpy188I TCNGA 1 cut(s) 132
Hpy99I CGWCG 1 cut(s) 99
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 4 cut(s) 125, 142, 169, 204
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 2 cut(s) 146, 257
LmnI GCTCC 1 cut(s) 222
LpnPI CCDG 9 cut(s) 21, 77, 85, 209, 246, 261, 288, 308, 324
Lsp1109I GCAGC 3 cut(s) 126, 148, 153
MaeIII GTNAC 3 cut(s) 10, 44, 145
MboII GAAGA 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 2 cut(s) 205, 333
MnlI CCTC 3 cut(s) 96, 100, 229
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 252
MspA1I CMGCKG 2 cut(s) 139, 199
MspI CCGG 3 cut(s) 64, 233, 295
MspR9I CCNGG 2 cut(s) 64, 276
MvaI CCWGG 1 cut(s) 276
NciI CCSGG 1 cut(s) 64
NlaIII CATG 2 cut(s) 146, 257
NmuCI GTSAC 1 cut(s) 145
NspI RCATGY 1 cut(s) 146
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 3 cut(s) 138, 141, 168
Psp6I CCWGG 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 1 cut(s) 274
PvuII CAGCTG 2 cut(s) 139, 199
RsaI GTAC 2 cut(s) 88, 315
RsaNI GTAC 2 cut(s) 87, 314
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 3 cut(s) 137, 140, 167
ScrFI CCNGG 2 cut(s) 64, 276
SduI GDGCHC 1 cut(s) 227
SetI ASST 4 cut(s) 141, 168, 201, 219
SmiMI CAYNNNNRTG 1 cut(s) 252
Sse9I AATT 2 cut(s) 205, 333
StyD4I CCNGG 2 cut(s) 62, 274
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 2 cut(s) 94, 320
TasI AATT 2 cut(s) 205, 333
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 3 cut(s) 136, 139, 166
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 231
XapI RAATTY 1 cut(s) 333
XceI RCATGY 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.