Rw7G036400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003348
Physical Location & Seq
Forward (+)
54962960 .. 54964146
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G036400.1

Sequence Viewer

Length: 249 bp
ATGGGCCGCAACTCGTTAATCCAGGGGGGCAAGTCTATCAAGACGAGCCCACTGGACGACGAGATCCGTCGGCATGGATCTGGAAGCGGCTGGGCGACGGTGCTGCATGTGGGTCTCGGAGCTGGTGCATCGACTGTGGCTCAGGGACTCAGGGCTTGGGGAGGTGCTAACTTGGTGGAGATCGGCGGCGTGGCTCGTGGTGCGGTTGGCTTCGTGGCGGGCCTCTTGGGTGGCGCGGGCTCGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.05

Weight (kDa)

10.78

Isoelectric Point (pI)

25.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 236
AciI CCGC 6 cut(s) 7, 87, 186, 203, 218, 236
AclWI GGATC 2 cut(s) 58, 85
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 2 cut(s) 58, 85
AoxI GGCC 2 cut(s) 4, 220
ApeKI GCWGC 1 cut(s) 103
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 4, 220
BanII GRGCYC 2 cut(s) 50, 242
BauI CACGAG 2 cut(s) 195, 241
BbvI GCAGC 1 cut(s) 90
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BciT130I CCWGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 119
BisI GCNGC 4 cut(s) 7, 88, 104, 187
BlsI GCNGC 4 cut(s) 8, 89, 105, 188
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 4, 220
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 22
BseMII CTCAG 2 cut(s) 155, 163
BseNI ACTGG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 90
BseYI CCCAGC 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 2 cut(s) 6, 222
BslFI GGGAC 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 2 cut(s) 6, 222
Bso31I GGTCTC 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 50, 242
Bsp143I GATC 3 cut(s) 63, 77, 180
BspACI CCGC 6 cut(s) 7, 87, 186, 203, 218, 236
BspANI GGCC 2 cut(s) 6, 222
BspCNI CTCAG 2 cut(s) 154, 162
BspFNI CGCG 1 cut(s) 236
BspPI GGATC 2 cut(s) 58, 85
BspTNI GGTCTC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 3 cut(s) 63, 77, 180
BssSI CACGAG 2 cut(s) 195, 241
Bst2BI CACGAG 2 cut(s) 195, 241
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 100, 136
BstC8I GCNNGC 2 cut(s) 220, 238
BstDEI CTNAG 2 cut(s) 141, 149
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 3 cut(s) 66, 80, 183
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 3 cut(s) 63, 77, 180
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 21
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 90
BstX2I RGATCY 2 cut(s) 63, 77
BstYI RGATCY 2 cut(s) 63, 77
BsuRI GGCC 2 cut(s) 6, 222
BtsIMutI CAGTG 1 cut(s) 50
Cac8I GCNNGC 2 cut(s) 220, 238
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 4, 220
CviAII CATG 2 cut(s) 74, 107
DdeI CTNAG 2 cut(s) 141, 149
DpnI GATC 3 cut(s) 65, 79, 182
DpnII GATC 3 cut(s) 63, 77, 180
Eco24I GRGCYC 2 cut(s) 50, 242
Eco31I GGTCTC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 21
EcoT38I GRGCYC 2 cut(s) 50, 242
FaeI CATG 2 cut(s) 77, 110
FaiI YATR 2 cut(s) 75, 108
FaqI GGGAC 1 cut(s) 159
FatI CATG 2 cut(s) 73, 106
FauI CCCGC 2 cut(s) 211, 229
Fnu4HI GCNGC 4 cut(s) 7, 88, 104, 187
FriOI GRGCYC 2 cut(s) 50, 242
Fsp4HI GCNGC 4 cut(s) 7, 88, 104, 187
GlaI GCGC 1 cut(s) 235
GluI GCNGC 4 cut(s) 7, 88, 104, 187
GsaI CCCAGC 1 cut(s) 94
HaeIII GGCC 2 cut(s) 6, 222
HhaI GCGC 1 cut(s) 236
Hin1II CATG 2 cut(s) 77, 110
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 2 cut(s) 40, 81
Hpy99I CGWCG 3 cut(s) 62, 72, 100
HpyCH4III ACNGT 2 cut(s) 100, 136
HpyCH4V TGCA 2 cut(s) 106, 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 2 cut(s) 141, 149
Hsp92II CATG 2 cut(s) 77, 110
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 3 cut(s) 63, 77, 180
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 8 cut(s) 8, 35, 38, 66, 76, 108, 128, 136
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 137
MalI GATC 3 cut(s) 65, 79, 182
MboI GATC 3 cut(s) 63, 77, 180
MflI RGATCY 2 cut(s) 63, 77
MhlI GDGCHC 2 cut(s) 50, 242
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 2 cut(s) 155, 233
MseI TTAA 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 3 cut(s) 63, 77, 180
NlaIII CATG 2 cut(s) 77, 110
NspI RCATGY 1 cut(s) 110
PkrI GCNGC 4 cut(s) 8, 89, 105, 188
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 1 cut(s) 90
PspGI CCWGG 1 cut(s) 21
PspPI GGNCC 2 cut(s) 4, 220
PsuI RGATCY 2 cut(s) 63, 77
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 4 cut(s) 7, 88, 104, 187
Sau3AI GATC 3 cut(s) 63, 77, 180
Sau96I GGNCC 2 cut(s) 4, 220
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 2 cut(s) 50, 242
SetI ASST 2 cut(s) 124, 166
SfaNI GCATC 1 cut(s) 137
SsiI CCGC 6 cut(s) 7, 87, 186, 203, 218, 236
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 100, 136
TaqI TCGA 1 cut(s) 131
TauI GCSGC 3 cut(s) 9, 90, 189
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 1 cut(s) 57
TseI GCWGC 1 cut(s) 103
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 1 cut(s) 57
XceI RCATGY 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.