Rw1G041140

Ribosomal protein L35

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003348
Physical Location & Seq
Forward (+)
68099538 .. 68102206
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G041140.1

Sequence Viewer

Length: 378 bp
ATGCGAGGACATAGGCTGCGTTTGGCCTCTCTTTCTTTGTCCTCGTCAATCAACATCAAGATTCCGGGTATTGGAGTTATGGAATTAATTGAATTTATTTATGGAAACGAGCATGAGAAGAGGAGAAAGCCAATGACACCAGTTACTTCCAAGATAAAGAAATACAAAATCAAGGGTTACTCGTCTTACAAGTCCCGGTTTAAGTTATTGAATGATGGTACTATTCGACGCTGGAGGGAGGGCAAGTGGCACAATGCACATCTGAAGAGCAACCACCACTCCAGGCTCTTTGAATGTCATCCGGTTCTTCACTTTCCCAGTACCATCGATAGACATCAAAATTTAGGTTTTTTCATGATATCAATGTCTTCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L35p

Protein Analysis

125

Amino Acids

14.69

Weight (kDa)

10.57

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L35p PF01632 55 - 95 4.4e-07 Ribosomal protein L35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 92, 340
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 2 cut(s) 220, 322
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 3 cut(s) 92, 211, 293
AjnI CCWGG 1 cut(s) 281
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 16
ApoI RAATTY 2 cut(s) 92, 340
AseI ATTAAT 1 cut(s) 86
AsuC2I CCSGG 2 cut(s) 66, 196
BbsI GAAGAC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 3
BccI CCATC 2 cut(s) 209, 332
BciT130I CCWGG 1 cut(s) 283
BcnI CCSGG 2 cut(s) 66, 196
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 3 cut(s) 66, 196, 283
BmrFI CCNGG 3 cut(s) 66, 196, 283
BmrI ACTGGG 1 cut(s) 312
BmuI ACTGGG 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 360
BpmI CTGGAG 2 cut(s) 253, 265
BpuMI CCSGG 2 cut(s) 66, 196
Bsa29I ATCGAT 1 cut(s) 327
BsaBI GATNNNNATC 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 301
BsaXI ACNNNNNCTCC 4 cut(s) 230, 260, 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 140, 318
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 1 cut(s) 283
BseCI ATCGAT 1 cut(s) 327
BseGI GGATG 1 cut(s) 298
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 1 cut(s) 71
BseNI ACTGG 2 cut(s) 140, 318
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 3
BshFI GGCC 1 cut(s) 26
BshVI ATCGAT 1 cut(s) 327
BsiSI CCGG 3 cut(s) 65, 196, 302
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 1 cut(s) 26
BspANI GGCC 1 cut(s) 26
BspDI ATCGAT 1 cut(s) 327
BspHI TCATGA 1 cut(s) 354
BspQI GCTCTTC 1 cut(s) 260
BsrI ACTGG 2 cut(s) 140, 318
Bst2UI CCWGG 1 cut(s) 283
Bst6I CTCTTC 2 cut(s) 113, 260
BstF5I GGATG 1 cut(s) 298
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 3 cut(s) 64, 194, 281
BstV1I GCAGC 1 cut(s) 3
BstV2I GAAGAC 1 cut(s) 360
Bsu15I ATCGAT 1 cut(s) 327
BsuRI GGCC 1 cut(s) 26
BsuTUI ATCGAT 1 cut(s) 327
BtsCI GGATG 1 cut(s) 298
CciI TCATGA 1 cut(s) 354
ClaI ATCGAT 1 cut(s) 327
CseI GACGC 1 cut(s) 237
Csp6I GTAC 2 cut(s) 219, 321
CviAII CATG 2 cut(s) 113, 355
CviJI RGCY 4 cut(s) 16, 26, 130, 286
CviKI_1 RGCY 4 cut(s) 16, 26, 130, 286
CviQI GTAC 2 cut(s) 219, 321
Eam1104I CTCTTC 2 cut(s) 113, 260
EarI CTCTTC 2 cut(s) 113, 260
Eco32I GATATC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 281
EcoRV GATATC 1 cut(s) 360
FaeI CATG 2 cut(s) 116, 358
FaiI YATR 5 cut(s) 12, 80, 102, 114, 356
FaqI GGGAC 1 cut(s) 178
FatI CATG 2 cut(s) 112, 354
Fnu4HI GCNGC 1 cut(s) 17
FokI GGATG 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 17
GsuI CTGGAG 2 cut(s) 253, 265
HaeIII GGCC 1 cut(s) 26
HapII CCGG 3 cut(s) 65, 196, 302
HgaI GACGC 1 cut(s) 237
Hin1II CATG 2 cut(s) 116, 358
HinfI GANTC 1 cut(s) 61
HpaII CCGG 3 cut(s) 65, 196, 302
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 2 cut(s) 58, 355
Hpy99I CGWCG 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 257
Hsp92II CATG 2 cut(s) 116, 358
LguI GCTCTTC 1 cut(s) 260
LpnPI CCDG 8 cut(s) 78, 153, 209, 217, 268, 295, 315, 331
Lsp1109I GCAGC 1 cut(s) 3
MaeIII GTNAC 2 cut(s) 142, 176
MboII GAAGA 4 cut(s) 130, 277, 299, 360
MluCI AATT 4 cut(s) 83, 87, 92, 340
MnlI CCTC 5 cut(s) 37, 52, 114, 228, 232
MseI TTAA 2 cut(s) 86, 201
MspI CCGG 3 cut(s) 65, 196, 302
MspR9I CCNGG 3 cut(s) 66, 196, 283
MvaI CCWGG 1 cut(s) 283
NciI CCSGG 2 cut(s) 66, 196
NlaIII CATG 2 cut(s) 116, 358
PagI TCATGA 1 cut(s) 354
PciSI GCTCTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 18
PshBI ATTAAT 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
RsaI GTAC 2 cut(s) 220, 322
RsaNI GTAC 2 cut(s) 219, 321
SapI GCTCTTC 1 cut(s) 260
SaqAI TTAA 2 cut(s) 86, 201
SatI GCNGC 1 cut(s) 17
ScrFI CCNGG 3 cut(s) 66, 196, 283
SetI ASST 1 cut(s) 349
Sse9I AATT 4 cut(s) 83, 87, 92, 340
StyD4I CCNGG 3 cut(s) 64, 194, 281
TaqI TCGA 2 cut(s) 226, 327
TasI AATT 4 cut(s) 83, 87, 92, 340
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 2 cut(s) 86, 201
Tru9I TTAA 2 cut(s) 86, 201
TseI GCWGC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 343
VspI ATTAAT 1 cut(s) 86
XapI RAATTY 2 cut(s) 92, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.