Rh7DG277200

Ribosomal protein L35

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003348
Physical Location & Seq
Forward (+)
29861510 .. 29868889
7380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG277200.1

Sequence Viewer

Length: 435 bp
ATGATGCAGCGGTTATGCTCCAAGCTTCGCTCTTTACCCTTACAATCAGCCCACAAGACTCTACCATCTCTCTCCTCTTCCCCTTCCTTACTTCGATCTTCTCGCCCTCTTCATTTCGCTTCAAATAGCAGCCACACATGGAGCTCAACGTCCCTCTTCAATGCCCATTCACCAACCCAACCTTCACTGCTCCTCGCCTCTCTTCGCTCTTCAACATTTCCCATCTCAATGGTTCAAGTGCGGCATGTTTCGTCAAGCGAGCGTAAGAAGAGGAGAAAGCCAATGACACCAGTTACTTCCAAGATAAAGAAATACAAAATCAAGGGTTACTCGTCTTACAAGTCCCGGTTTAAGTTATTGAATGATGGCACTATTCGACGCTGGAGGGAGGGCAAGCGGCACAATGCACATTTGAAGGTGTGTCTTGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L35p

Protein Analysis

144

Amino Acids

16.42

Weight (kDa)

11.78

Isoelectric Point (pI)

71.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L35p PF01632 105 - 136 1.2e-06 Ribosomal protein L35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 10, 241, 397
AgsI TTSAA 6 cut(s) 123, 160, 213, 236, 361, 415
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 2 cut(s) 25, 144
AluI AGCT 2 cut(s) 25, 144
Alw21I GWGCWC 1 cut(s) 146
ApeKI GCWGC 2 cut(s) 7, 129
AsuC2I CCSGG 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 162
BanII GRGCYC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 19, 141
BccI CCATC 3 cut(s) 73, 230, 359
BcnI CCSGG 1 cut(s) 346
BisI GCNGC 4 cut(s) 8, 130, 242, 398
BlsI GCNGC 4 cut(s) 9, 131, 243, 399
Bme1390I CCNGG 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 346
BpmI CTGGAG 1 cut(s) 403
BpuMI CCSGG 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 290
BseRI GAGGAG 3 cut(s) 64, 182, 286
BseXI GCAGC 2 cut(s) 19, 141
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 346
BslFI GGGAC 2 cut(s) 136, 328
BsmFI GGGAC 2 cut(s) 136, 328
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 95
BspACI CCGC 3 cut(s) 10, 241, 397
BspQI GCTCTTC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 290
BssMI GATC 1 cut(s) 95
Bst6I CTCTTC 6 cut(s) 82, 114, 161, 207, 214, 263
BstC8I GCNNGC 2 cut(s) 260, 395
BstKTI GATC 1 cut(s) 98
BstMBI GATC 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 344
BstV1I GCAGC 2 cut(s) 19, 141
BstXI CCANNNNNNTGG 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 185
Cac8I GCNNGC 2 cut(s) 260, 395
CseI GACGC 1 cut(s) 387
CviAII CATG 2 cut(s) 138, 245
CviJI RGCY 5 cut(s) 25, 50, 132, 144, 280
CviKI_1 RGCY 5 cut(s) 25, 50, 132, 144, 280
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
Eam1104I CTCTTC 6 cut(s) 82, 114, 161, 207, 214, 263
EarI CTCTTC 6 cut(s) 82, 114, 161, 207, 214, 263
Ecl136II GAGCTC 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 146
Eco53kI GAGCTC 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 146
FaeI CATG 2 cut(s) 141, 248
FaiI YATR 3 cut(s) 16, 139, 246
FaqI GGGAC 2 cut(s) 136, 328
FatI CATG 2 cut(s) 137, 244
Fnu4HI GCNGC 4 cut(s) 8, 130, 242, 398
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 4 cut(s) 8, 130, 242, 398
GluI GCNGC 4 cut(s) 8, 130, 242, 398
GsuI CTGGAG 1 cut(s) 403
HapII CCGG 1 cut(s) 346
HgaI GACGC 1 cut(s) 387
Hin1II CATG 2 cut(s) 141, 248
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 1 cut(s) 58
HpaII CCGG 1 cut(s) 346
HphI GGTGA 1 cut(s) 162
Hpy99I CGWCG 1 cut(s) 381
HpyAV CCTTC 3 cut(s) 93, 192, 409
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 3 cut(s) 7, 407, 428
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 2 cut(s) 141, 248
Kzo9I GATC 1 cut(s) 95
LguI GCTCTTC 1 cut(s) 214
LmnI GCTCC 3 cut(s) 23, 141, 195
LpnPI CCDG 3 cut(s) 303, 359, 367
Lsp1109I GCAGC 2 cut(s) 19, 141
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 2 cut(s) 292, 326
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MboII GAAGA 7 cut(s) 69, 90, 101, 148, 194, 201, 280
MhlI GDGCHC 1 cut(s) 146
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 8 cut(s) 85, 117, 164, 203, 208, 264, 378, 382
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 10
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 1 cut(s) 346
NciI CCSGG 1 cut(s) 346
NdeII GATC 1 cut(s) 95
NlaIII CATG 2 cut(s) 141, 248
NspI RCATGY 1 cut(s) 248
PciSI GCTCTTC 1 cut(s) 214
PkrI GCNGC 4 cut(s) 9, 131, 243, 399
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 227
SacI GAGCTC 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 4 cut(s) 8, 130, 242, 398
Sau3AI GATC 1 cut(s) 95
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 346
SduI GDGCHC 1 cut(s) 146
SetI ASST 5 cut(s) 27, 146, 152, 184, 420
SmiMI CAYNNNNRTG 1 cut(s) 227
SsiI CCGC 3 cut(s) 10, 241, 397
SstI GAGCTC 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 344
TaiI ACGT 1 cut(s) 152
TaqI TCGA 2 cut(s) 94, 376
TauI GCSGC 2 cut(s) 244, 400
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 192
TseI GCWGC 2 cut(s) 7, 129
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 1 cut(s) 192
XceI RCATGY 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.