Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003348

Physical Location & Seq

Genomic Coordinates Reverse (-)

49431216 .. 49455953

Gene Structure 24738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG310300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGGCGGCGTGTGGGTCTTGGGGCTGGTGCATCGACTGTGGCTCGCGGGGCTCGGGGATGTGCTGGCTTGGTGGAGATCAGCGGCTTGGCTCGTGGTGCGGTTGGCATTGTGGCGGGGCTTGGGCGGTGCGGGTTCGTGGTGACGGGACCTTTGGGTAGAGCTGCACAGGCGGCTGCAGGTGTGGTGGACGGGTGGACTGGACTTGGGTCAACCCTAGCTTGCTGGATCTTGAGATGGGCTCTTCTCTTTGGGGCTGCCCTATTGGCGGCGGAGAAACCGTTCAAGAGTATATTGAAATCGCTTGAGAAGCCGGACGGCGGCGAGTTCGGAATAAGCTACCGTACTCCATTAAGATCCTTCTTGAGTCTGCAATCTATAACTGCCAAGAGTTTCAGGTCTTACAAGTCCCGGTTTAAGTTATTGAATGATGGCACTATTCGATGCTGGAGGGAGGGCAAGCGGCACAATGCACATCTGAAGAGATGGCCCAGGAACTCGAAAGCGAAATTCGAGTGTGTGTTTAGTGAAGTTGGTGTTGTTAAAGAAGATGGGTTTTCGATGCCTGTGAACCCCAGCAGCCAAGAAACCTTGGGTCATTGTTTCATAGAGTTTAATTCTCCTCAGGAATTAGAATGCAAACGCGGTCTCTTTAGTTCTCTTTTGCTTAGACAAATCAAGAAACTCAAGCTTTGTCAATTTGCCAAGAAACCGAGGGATAACTCCTGTCAAGTAGTTCCTGCTGAGACTGAGATTGAACAACAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

RRM_1 eIF2A

Protein Analysis

256

Amino Acids

27.78

Weight (kDa)

9.9

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45590
fragaria_vesca	FvH4_5g23590 FvH4_5g23590 FvH4_5g23590
malus_domestica	MD00G1000200.v1.1 MD06G1023100.v1.1
prunus_persica	Prupe.5G024300_v2.0.a1
pyrus_communis	pycom06g01870 pycom16g25360
rosa_chinensis	RchiOBHm_Chr1g0382651 RchiOBHm_Chr7g0212891
rosa_laevigata	RLG00000000943 RLG00000002859 RLG00000034251
rosa_multiflora	Rmu_sc0001355.1_g000007 Rmu_sc0006862.1_g000004
rosa_roxburghii	Rroxscaffold_3G00246450 Rroxscaffold_6G00416720 Rroxscaffold_7G00181750
rosa_rugosa	Rorug07G0137300 Rorug07G0137400
rosa_samantha	Rh1BG416900 Rh1DG449100 Rh6CG309300 Rh6CG309400 Rh6CG310300 Rh6CG375100 Rh6DG293900 Rh7AG269000 Rh7BG264600 Rh7CG288200 Rh7DG277200 Rh7DG475900
rosa_wichuraiana	Rw1G041140 Rw7G023370 Rw7G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	170
AccII	CGCG	2 cut(s)	48, 645
AclWI	GGATC	2 cut(s)	236, 351
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	2 cut(s)	268, 320
AgsI	TTSAA	4 cut(s)	286, 298, 427, 758
AjnI	CCWGG	1 cut(s)	491
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	4 cut(s)	164, 221, 339, 691
AluI	AGCT	4 cut(s)	164, 221, 339, 691
Alw26I	GTCTC	2 cut(s)	653, 740
AlwI	GGATC	2 cut(s)	236, 351
Ama87I	CYCGRG	1 cut(s)	54
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	4 cut(s)	164, 176, 257, 579
ApoI	RAATTY	1 cut(s)	509
ArsI	GACNNNNNNTTYG	2 cut(s)	136, 168
Asp700I	GAANNNNTTC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	149, 489
AsuC2I	CCSGG	1 cut(s)	412
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	149
AxyI	CCTNAGG	1 cut(s)	624
BanII	GRGCYC	2 cut(s)	55, 244
BauI	CACGAG	1 cut(s)	93
BbvI	GCAGC	4 cut(s)	151, 163, 244, 591
BccI	CCATC	4 cut(s)	231, 425, 480, 545
BceAI	ACGGC	1 cut(s)	334
BciT130I	CCWGG	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	412
BcoDI	GTCTC	2 cut(s)	653, 740
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	266
Bme1390I	CCNGG	2 cut(s)	412, 493
Bme18I	GGWCC	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	149, 489
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	2 cut(s)	412, 493
BmsI	GCATC	3 cut(s)	41, 434, 552
BoxI	GACNNNNGTC	1 cut(s)	208
BplI	GAGNNNNNCTC	2 cut(s)	226, 258
BpmI	CTGGAG	1 cut(s)	469
BpuEI	CTTGAG	4 cut(s)	253, 326, 385, 671
BpuMI	CCSGG	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	3 cut(s)	491, 591, 713
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 320
Bse1I	ACTGG	1 cut(s)	205
Bse21I	CCTNAGG	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	493
BseDI	CCNNGG	3 cut(s)	491, 591, 713
BseGI	GGATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	268, 320
BseMII	CTCAG	3 cut(s)	638, 735, 741
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	612
BseXI	GCAGC	4 cut(s)	151, 163, 244, 591
BseYI	CCCAGC	1 cut(s)	575
BsgI	GTGCAG	1 cut(s)	150
Bsh1236I	CGCG	2 cut(s)	48, 645
BshFI	GGCC	1 cut(s)	490
BsiHKCI	CYCGRG	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	314, 412
BslFI	GGGAC	2 cut(s)	162, 394
BslI	CCNNNNNNNGG	2 cut(s)	268, 320
BsmAI	GTCTC	2 cut(s)	653, 740
BsmFI	GGGAC	2 cut(s)	162, 394
BsmI	GAATGC	1 cut(s)	641
BsnI	GGCC	1 cut(s)	490
Bso31I	GGTCTC	1 cut(s)	653
BsoBI	CYCGRG	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	55, 244
Bsp143I	GATC	3 cut(s)	78, 228, 356
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	3 cut(s)	637, 736, 742
BspFNI	CGCG	2 cut(s)	48, 645
BspLI	GGNNCC	1 cut(s)	150
BspMAI	CTGCAG	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	170
BspPI	GGATC	2 cut(s)	236, 351
BspQI	GCTCTTC	1 cut(s)	249
BspTNI	GGTCTC	1 cut(s)	653
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	3 cut(s)	491, 591, 713
BssMI	GATC	3 cut(s)	78, 228, 356
BssSI	CACGAG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	591
Bst2BI	CACGAG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	493
Bst4CI	ACNGT	3 cut(s)	40, 282, 344
Bst6I	CTCTTC	2 cut(s)	249, 476
BstC8I	GCNNGC	4 cut(s)	46, 67, 223, 461
BstDEI	CTNAG	5 cut(s)	624, 668, 744, 750, 768
BstF5I	GGATG	1 cut(s)	65
BstFNI	CGCG	2 cut(s)	48, 645
BstKTI	GATC	3 cut(s)	81, 231, 359
BstMAI	GTCTC	2 cut(s)	653, 740
BstMBI	GATC	3 cut(s)	78, 228, 356
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 98, 170, 173, 266, 310
BstNI	CCWGG	1 cut(s)	493
BstPAI	GACNNNNGTC	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	410, 491
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	2 cut(s)	48, 645
BstV1I	GCAGC	4 cut(s)	151, 163, 244, 591
BstX2I	RGATCY	2 cut(s)	228, 356
BstYI	RGATCY	2 cut(s)	228, 356
Bsu36I	CCTNAGG	1 cut(s)	624
BsuRI	GGCC	1 cut(s)	490
BtsCI	GGATG	1 cut(s)	65
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	4 cut(s)	46, 67, 223, 461
Cfr13I	GGNCC	2 cut(s)	149, 489
Csp6I	GTAC	1 cut(s)	345
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	5 cut(s)	624, 668, 744, 750, 768
DpnI	GATC	3 cut(s)	80, 230, 358
DpnII	GATC	3 cut(s)	78, 228, 356
Eam1104I	CTCTTC	2 cut(s)	249, 476
EarI	CTCTTC	2 cut(s)	249, 476
EciI	GGCGGA	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	2 cut(s)	55, 244
Eco31I	GGTCTC	1 cut(s)	653
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	500
Eco81I	CCTNAGG	1 cut(s)	624
Eco88I	CYCGRG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	491
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	2 cut(s)	55, 244
ErhI	CCWWGG	1 cut(s)	591
FaiI	YATR	3 cut(s)	293, 380, 608
FaqI	GGGAC	2 cut(s)	162, 394
FauI	CCCGC	3 cut(s)	41, 109, 125
FokI	GGATG	1 cut(s)	72
FriOI	GRGCYC	2 cut(s)	55, 244
FspBI	CTAG	1 cut(s)	218
GsaI	CCCAGC	1 cut(s)	579
GsuI	CTGGAG	1 cut(s)	469
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	2 cut(s)	314, 412
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	1 cut(s)	367
HpaII	CCGG	2 cut(s)	314, 412
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	4 cut(s)	190, 198, 213, 571
Hpy188I	TCNGA	2 cut(s)	332, 480
Hpy188III	TCNNGA	5 cut(s)	232, 286, 364, 626, 679
Hpy8I	GTNNAC	4 cut(s)	190, 198, 213, 571
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	3 cut(s)	40, 282, 344
HpyCH4V	TGCA	6 cut(s)	32, 167, 179, 373, 473, 639
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 98, 170, 173, 266, 310
HpyF3I	CTNAG	5 cut(s)	624, 668, 744, 750, 768
Kzo9I	GATC	3 cut(s)	78, 228, 356
LguI	GCTCTTC	1 cut(s)	249
Lsp1109I	GCAGC	4 cut(s)	151, 163, 244, 591
LweI	GCATC	3 cut(s)	41, 434, 552
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	80, 230, 358
MboI	GATC	3 cut(s)	78, 228, 356
MboII	GAAGA	3 cut(s)	236, 493, 560
MflI	RGATCY	2 cut(s)	228, 356
MhlI	GDGCHC	2 cut(s)	55, 244
MluCI	AATT	4 cut(s)	509, 616, 629, 698
MlyI	GAGTC	1 cut(s)	376
MnlI	CCTC	4 cut(s)	444, 448, 633, 708
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	4 cut(s)	353, 417, 543, 615
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	2 cut(s)	314, 412
MspR9I	CCNGG	2 cut(s)	412, 493
Mva1269I	GAATGC	1 cut(s)	641
MvaI	CCWGG	1 cut(s)	493
MvnI	CGCG	2 cut(s)	48, 645
MwoI	GCNNNNNNNGC	6 cut(s)	50, 98, 170, 173, 266, 310
NciI	CCSGG	1 cut(s)	412
NdeII	GATC	3 cut(s)	78, 228, 356
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	142
PaqCI	CACCTGC	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	249
PctI	GAATGC	1 cut(s)	641
PdmI	GAANNNNTTC	1 cut(s)	281
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
PpuMI	RGGWCCY	1 cut(s)	149
PshAI	GACNNNNGTC	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	491
PspFI	CCCAGC	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	491
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	2 cut(s)	149, 489
PspPPI	RGGWCCY	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	2 cut(s)	228, 356
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	4 cut(s)	353, 417, 543, 615
Sau3AI	GATC	3 cut(s)	78, 228, 356
Sau96I	GGNCC	2 cut(s)	149, 489
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	2 cut(s)	412, 493
SduI	GDGCHC	2 cut(s)	55, 244
SetI	ASST	8 cut(s)	154, 166, 184, 223, 341, 401, 593, 693
SfaNI	GCATC	3 cut(s)	41, 434, 552
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	4 cut(s)	232, 305, 364, 686
SmoI	CTYRAG	4 cut(s)	232, 305, 364, 686
Sse9I	AATT	4 cut(s)	509, 616, 629, 698
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	410, 491
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	40, 282, 344
TaqI	TCGA	5 cut(s)	35, 442, 500, 513, 560
TasI	AATT	4 cut(s)	509, 616, 629, 698
TauI	GCSGC	6 cut(s)	10, 87, 176, 272, 324, 466
Tru1I	TTAA	4 cut(s)	353, 417, 543, 615
Tru9I	TTAA	4 cut(s)	353, 417, 543, 615
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	4 cut(s)	164, 176, 257, 579
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	509
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.