Rh7AG269000

Ribosomal protein L35

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003348
Physical Location & Seq
Forward (+)
28023706 .. 28030240
6535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG269000.1

Sequence Viewer

Length: 513 bp
ATGATGCAGCGATTATGCTCCAAGCTTCGCTCTTTACCCTTACAATCAGCCCACAAGACTCTACCATCTCTCTCCTCTTCCTCTTCCTCTTCCTTGCTTCGATCTTCTCGCCCTCTTCATTTCGCTTCAAATAGCAGCCACACATGGAGCTCAACGTCCCTCTTCAATGCCCATTCACCAACCCAACCTTCACTGCTCCTCGCCTCTCTTCGCTCTTCAACATTTCCCATCTCAATGGTTCAAGTGCGGCATGTTTCGTCAAGCGAGCGTAAGAAGAGGAGAAAGCCAATGACACCAGTTACTTCCAAGATAAAGAAATACAAAATCAAGGGTTACTCGTCTTACAAGTCCCGGTTTAAGTTATTGAATGATGGTACTATTCGACGCTGGAGGGAGGGCAAGCGGCACAATGCACATTTGAAGTCGAAGATATCCAAGCGTAGACTGAGACTACCTGCCCTCGTCCATCCTGCTTATGCCAAAGTGATGAAGAAGCTCAATTTTTGCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L35p

Protein Analysis

170

Amino Acids

19.37

Weight (kDa)

11.88

Isoelectric Point (pI)

70.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L35p PF01632 107 - 166 1.8e-14 Ribosomal protein L35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 463
AccI GTMKAC 1 cut(s) 442
AciI CCGC 2 cut(s) 247, 403
AfaI GTAC 1 cut(s) 376
AgsI TTSAA 6 cut(s) 129, 166, 219, 242, 367, 421
AjuI GAANNNNNNNTTGG 2 cut(s) 172, 204
AluBI AGCT 3 cut(s) 25, 150, 496
AluI AGCT 3 cut(s) 25, 150, 496
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 442
ApeKI GCWGC 2 cut(s) 7, 135
AspLEI GCGC 1 cut(s) 509
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 1 cut(s) 168
BanII GRGCYC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 19, 147
BccI CCATC 4 cut(s) 73, 236, 365, 474
BcnI CCSGG 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 442
BfuAI ACCTGC 1 cut(s) 463
BisI GCNGC 4 cut(s) 8, 136, 248, 404
BlsI GCNGC 4 cut(s) 9, 137, 249, 405
Bme1390I CCNGG 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 352
BpmI CTGGAG 1 cut(s) 409
BpuMI CCSGG 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 296
BseGI GGATG 1 cut(s) 466
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 3 cut(s) 64, 188, 292
BseXI GCAGC 2 cut(s) 19, 147
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 352
BslFI GGGAC 2 cut(s) 142, 334
BsmAI GTCTC 1 cut(s) 442
BsmFI GGGAC 2 cut(s) 142, 334
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 101
BspACI CCGC 2 cut(s) 247, 403
BspCNI CTCAG 1 cut(s) 438
BspMI ACCTGC 1 cut(s) 463
BspQI GCTCTTC 1 cut(s) 220
BsrI ACTGG 1 cut(s) 296
BssMI GATC 1 cut(s) 101
Bst6I CTCTTC 8 cut(s) 82, 88, 94, 120, 167, 213, 220, 269
BstC8I GCNNGC 2 cut(s) 266, 401
BstDEI CTNAG 1 cut(s) 446
BstF5I GGATG 1 cut(s) 466
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 1 cut(s) 104
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 350
BstV1I GCAGC 2 cut(s) 19, 147
BstXI CCANNNNNNTGG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 466
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 191
BveI ACCTGC 1 cut(s) 463
Cac8I GCNNGC 2 cut(s) 266, 401
CfoI GCGC 1 cut(s) 509
CseI GACGC 1 cut(s) 393
Csp6I GTAC 1 cut(s) 375
CviAII CATG 2 cut(s) 144, 251
CviJI RGCY 6 cut(s) 25, 50, 138, 150, 286, 496
CviKI_1 RGCY 6 cut(s) 25, 50, 138, 150, 286, 496
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 1 cut(s) 446
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
Eam1104I CTCTTC 8 cut(s) 82, 88, 94, 120, 167, 213, 220, 269
EarI CTCTTC 8 cut(s) 82, 88, 94, 120, 167, 213, 220, 269
Ecl136II GAGCTC 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 152
Eco32I GATATC 1 cut(s) 432
Eco53kI GAGCTC 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 150
EcoRV GATATC 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 152
FaeI CATG 2 cut(s) 147, 254
FaiI YATR 4 cut(s) 16, 145, 252, 477
FaqI GGGAC 2 cut(s) 142, 334
FatI CATG 2 cut(s) 143, 250
FblI GTMKAC 1 cut(s) 442
Fnu4HI GCNGC 4 cut(s) 8, 136, 248, 404
FokI GGATG 1 cut(s) 453
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 4 cut(s) 8, 136, 248, 404
GlaI GCGC 1 cut(s) 508
GluI GCNGC 4 cut(s) 8, 136, 248, 404
GsuI CTGGAG 1 cut(s) 409
HapII CCGG 1 cut(s) 352
HgaI GACGC 1 cut(s) 393
HhaI GCGC 1 cut(s) 509
Hin1II CATG 2 cut(s) 147, 254
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 1 cut(s) 58
HpaII CCGG 1 cut(s) 352
HphI GGTGA 1 cut(s) 168
Hpy166II GTNNAC 1 cut(s) 443
Hpy8I GTNNAC 1 cut(s) 443
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 7, 413
HpyF3I CTNAG 1 cut(s) 446
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 2 cut(s) 147, 254
HspAI GCGC 1 cut(s) 507
Kzo9I GATC 1 cut(s) 101
LguI GCTCTTC 1 cut(s) 220
LmnI GCTCC 3 cut(s) 23, 147, 201
LpnPI CCDG 5 cut(s) 309, 365, 373, 468, 483
Lsp1109I GCAGC 2 cut(s) 19, 147
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 298, 332
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 1 cut(s) 499
MlyI GAGTC 1 cut(s) 52
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 1 cut(s) 352
MspR9I CCNGG 1 cut(s) 352
NciI CCSGG 1 cut(s) 352
NdeII GATC 1 cut(s) 101
NlaIII CATG 2 cut(s) 147, 254
NspI RCATGY 1 cut(s) 254
PciSI GCTCTTC 1 cut(s) 220
PkrI GCNGC 4 cut(s) 9, 137, 249, 405
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 152
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
RseI CAYNNNNRTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 152
SapI GCTCTTC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 4 cut(s) 8, 136, 248, 404
Sau3AI GATC 1 cut(s) 101
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 352
SduI GDGCHC 1 cut(s) 152
SetI ASST 6 cut(s) 27, 152, 158, 190, 457, 498
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 1 cut(s) 499
SsiI CCGC 2 cut(s) 247, 403
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 350
TaiI ACGT 1 cut(s) 158
TaqI TCGA 3 cut(s) 100, 382, 425
TasI AATT 1 cut(s) 499
TauI GCSGC 2 cut(s) 250, 406
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 198
TseI GCWGC 2 cut(s) 7, 135
TspDTI ATGAA 2 cut(s) 107, 503
TspRI CASTG 1 cut(s) 198
XceI RCATGY 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.