Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006862.1

Orthogroup ID

OG0003348

Physical Location & Seq

Genomic Coordinates Forward (+)

13063 .. 16424

Gene Structure 3362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006862.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgagagcatggattagcgttttagattcctcctctaattccgattcctcctttggttcaggttctggtttgataaatgtgatgtccgacatttgcatatcgataacccggtcgtggatggtggcttcgtcctctggtactcgactccaccaacctccgattcacctcctacttcaacaactccaatggctaggggcccaaaactcgtttaccggctacgaaaccagctctaatgtcgctggccccagtccttcaccagagagagagagagagagagatggcatacatgtcgattcttgggccatgaaagtaccgaaagacctcaggttcgagttcgcgggagcccaacgccagaacgaaaggagtgtacatgaggcgagtcatcttctccagcacgacgctctgacaccggagatgcgaggacataggctgcgtttggcctctctttctttgtcctcgtcaatcaacatcaagattccggattttggcttcaaagaaatagctttctgggtctatgtttctgcttatgaaattgctctggtttgggcatttacagatgtgaatttgagttctcagcttaaattcaagacttttattctaggaacgaaccccactattcaatgctttgatgaacctgagcataagaagaggagaaagccaatgacaccagttacttccaagataaagaaatacaaaatcaagggttactcgtcttacaagtcccggtttaagttattgaatgatggcactattcgacgctggagggagggcaagtggcacaatgcacatctgaagaccactctttttgtgttttctgatacttttcacggtatctctgaacagcagctgcatgtgacaaaatcaaatgatgagcagcaatgtaaggctcagtttgtgaaatcccagctgtgcaatttccataagctttggtgcaccgtgccggaggattcatcccattgtcatggcagagcaaccaccactccaggctcattgaatgtcatccggttcttcactttcccagtaccatcgatagacatcaaaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L35p

Protein Analysis

348

Amino Acids

39.58

Weight (kDa)

9.46

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45590
fragaria_vesca	FvH4_5g23590 FvH4_5g23590 FvH4_5g23590
malus_domestica	MD00G1000200.v1.1 MD06G1023100.v1.1
prunus_persica	Prupe.5G024300_v2.0.a1
pyrus_communis	pycom06g01870 pycom16g25360
rosa_chinensis	RchiOBHm_Chr1g0382651 RchiOBHm_Chr7g0212891
rosa_laevigata	RLG00000000943 RLG00000002859 RLG00000034251
rosa_multiflora	Rmu_sc0001355.1_g000007 Rmu_sc0006862.1_g000004
rosa_roxburghii	Rroxscaffold_3G00246450 Rroxscaffold_6G00416720 Rroxscaffold_7G00181750
rosa_rugosa	Rorug07G0137300 Rorug07G0137400
rosa_samantha	Rh1BG416900 Rh1DG449100 Rh6CG309300 Rh6CG309400 Rh6CG310300 Rh6CG375100 Rh6DG293900 Rh7AG269000 Rh7BG264600 Rh7CG288200 Rh7DG277200 Rh7DG475900
rosa_wichuraiana	Rw1G041140 Rw7G023370 Rw7G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	338
AccIII	TCCGGA	1 cut(s)	478
AciI	CCGC	1 cut(s)	338
AcsI	RAATTY	3 cut(s)	562, 581, 1041
AcuI	CTGAAG	1 cut(s)	812
AfaI	GTAC	4 cut(s)	139, 312, 369, 1023
AfiI	CCNNNNNNNGG	2 cut(s)	114, 485
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	6 cut(s)	176, 493, 586, 620, 739, 994
AjnI	CCWGG	1 cut(s)	982
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AluBI	AGCT	6 cut(s)	228, 503, 577, 847, 907, 925
AluI	AGCT	6 cut(s)	228, 503, 577, 847, 907, 925
Alw21I	GWGCWC	1 cut(s)	935
Alw44I	GTGCAC	1 cut(s)	931
AlwNI	CAGNNNCTG	2 cut(s)	65, 847
Aor13HI	TCCGGA	1 cut(s)	478
AoxI	GGCC	4 cut(s)	195, 241, 300, 438
ApaI	GGGCCC	1 cut(s)	199
ApaLI	GTGCAC	1 cut(s)	931
ApeKI	GCWGC	4 cut(s)	430, 844, 847, 874
ApoI	RAATTY	3 cut(s)	562, 581, 1041
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AspS9I	GGNCC	4 cut(s)	195, 196, 242, 300
AsuC2I	CCSGG	2 cut(s)	109, 724
AsuHPI	GGTGA	2 cut(s)	155, 246
AxyI	CCTNAGG	1 cut(s)	323
BaeGI	GKGCMC	2 cut(s)	199, 935
BanII	GRGCYC	2 cut(s)	199, 346
BbsI	GAAGAC	1 cut(s)	800
Bbv12I	GWGCWC	1 cut(s)	935
BbvI	GCAGC	4 cut(s)	417, 834, 856, 886
BccI	CCATC	4 cut(s)	112, 272, 737, 1033
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	984
BcnI	CCSGG	2 cut(s)	109, 724
BfaI	CTAG	2 cut(s)	191, 599
BisI	GCNGC	4 cut(s)	431, 845, 848, 875
BlsI	GCNGC	4 cut(s)	432, 846, 849, 876
Bme1390I	CCNGG	3 cut(s)	109, 724, 984
BmgT120I	GGNCC	4 cut(s)	195, 196, 242, 300
BmiI	GGNNCC	4 cut(s)	196, 197, 244, 343
BmrFI	CCNGG	3 cut(s)	109, 724, 984
BmrI	ACTGGG	2 cut(s)	240, 1013
BmsI	GCATC	1 cut(s)	405
BmuI	ACTGGG	2 cut(s)	240, 1013
BpiI	GAAGAC	1 cut(s)	800
BpmI	CTGGAG	3 cut(s)	374, 781, 966
Bpu10I	CCTNAGC	1 cut(s)	636
BpuMI	CCSGG	2 cut(s)	109, 724
Bsa29I	ATCGAT	2 cut(s)	101, 1028
BsaBI	GATNNNNATC	1 cut(s)	1034
BsaWI	WCCGGW	3 cut(s)	409, 478, 1002
BsaXI	ACNNNNNCTCC	4 cut(s)	758, 788, 964, 994
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 485
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	3 cut(s)	246, 668, 1019
Bse21I	CCTNAGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	884
Bse8I	GATNNNNATC	1 cut(s)	1034
BseAI	TCCGGA	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	984
BseCI	ATCGAT	2 cut(s)	101, 1028
BseGI	GGATG	3 cut(s)	123, 950, 999
BseJI	GATNNNNATC	1 cut(s)	1034
BseLI	CCNNNNNNNGG	2 cut(s)	114, 485
BseMI	GCAATG	1 cut(s)	884
BseMII	CTCAG	4 cut(s)	337, 587, 627, 902
BseNI	ACTGG	3 cut(s)	246, 668, 1019
BseRI	GAGGAG	2 cut(s)	22, 664
BseSI	GKGCMC	2 cut(s)	199, 935
BseXI	GCAGC	4 cut(s)	417, 834, 856, 886
BseYI	CCCAGC	1 cut(s)	903
Bsh1236I	CGCG	1 cut(s)	338
Bsh1285I	CGRYCG	1 cut(s)	113
BshFI	GGCC	4 cut(s)	197, 243, 302, 440
BshVI	ATCGAT	2 cut(s)	101, 1028
BsiEI	CGRYCG	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	935
BsiSI	CCGG	7 cut(s)	109, 213, 410, 479, 724, 941, 1003
BslFI	GGGAC	1 cut(s)	706
BslI	CCNNNNNNNGG	2 cut(s)	114, 485
BsmFI	GGGAC	1 cut(s)	706
BsnI	GGCC	4 cut(s)	197, 243, 302, 440
Bsp120I	GGGCCC	1 cut(s)	195
Bsp1286I	GDGCHC	3 cut(s)	199, 346, 935
Bsp13I	TCCGGA	1 cut(s)	478
Bsp1407I	TGTACA	1 cut(s)	367
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	4 cut(s)	197, 243, 302, 440
BspCNI	CTCAG	4 cut(s)	336, 586, 628, 901
BspDI	ATCGAT	2 cut(s)	101, 1028
BspEI	TCCGGA	1 cut(s)	478
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	4 cut(s)	196, 197, 244, 343
BsrDI	GCAATG	1 cut(s)	884
BsrFI	RCCGGY	1 cut(s)	212
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	3 cut(s)	246, 668, 1019
BssAI	RCCGGY	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	984
Bst4CI	ACNGT	2 cut(s)	830, 937
Bst6I	CTCTTC	1 cut(s)	641
BstAUI	TGTACA	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	4 cut(s)	323, 573, 636, 888
BstF5I	GGATG	3 cut(s)	123, 950, 999
BstFNI	CGCG	1 cut(s)	338
BstMCI	CGRYCG	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	984
BstNSI	RCATGY	2 cut(s)	290, 854
BstSCI	CCNGG	3 cut(s)	107, 722, 982
BstSLI	GKGCMC	2 cut(s)	199, 935
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	4 cut(s)	417, 834, 856, 886
BstV2I	GAAGAC	1 cut(s)	800
BstXI	CCANNNNNNTGG	1 cut(s)	962
Bsu15I	ATCGAT	2 cut(s)	101, 1028
Bsu36I	CCTNAGG	1 cut(s)	323
BsuRI	GGCC	4 cut(s)	197, 243, 302, 440
BsuTUI	ATCGAT	2 cut(s)	101, 1028
BtsCI	GGATG	3 cut(s)	123, 950, 999
Cac8I	GCNNGC	1 cut(s)	241
CaiI	CAGNNNCTG	2 cut(s)	65, 847
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	4 cut(s)	195, 196, 242, 300
ClaI	ATCGAT	2 cut(s)	101, 1028
CseI	GACGC	2 cut(s)	407, 765
Csp6I	GTAC	4 cut(s)	138, 311, 368, 1022
CspCI	CAANNNNNGTGG	2 cut(s)	787, 822
CviAII	CATG	6 cut(s)	9, 287, 304, 371, 851, 962
CviQI	GTAC	4 cut(s)	138, 311, 368, 1022
DdeI	CTNAG	4 cut(s)	323, 573, 636, 888
Eam1104I	CTCTTC	1 cut(s)	641
EarI	CTCTTC	1 cut(s)	641
Eco24I	GRGCYC	2 cut(s)	199, 346
Eco57I	CTGAAG	1 cut(s)	812
Eco81I	CCTNAGG	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	982
EcoT38I	GRGCYC	2 cut(s)	199, 346
FaeI	CATG	6 cut(s)	12, 290, 307, 374, 854, 965
FaqI	GGGAC	1 cut(s)	706
FatI	CATG	6 cut(s)	8, 286, 303, 370, 850, 961
FauI	CCCGC	1 cut(s)	331
Fnu4HI	GCNGC	4 cut(s)	431, 845, 848, 875
FokI	GGATG	3 cut(s)	130, 937, 986
FriOI	GRGCYC	2 cut(s)	199, 346
Fsp4HI	GCNGC	4 cut(s)	431, 845, 848, 875
FspBI	CTAG	2 cut(s)	191, 599
GluI	GCNGC	4 cut(s)	431, 845, 848, 875
GsaI	CCCAGC	1 cut(s)	907
GsuI	CTGGAG	3 cut(s)	374, 781, 966
HaeIII	GGCC	4 cut(s)	197, 243, 302, 440
HapII	CCGG	7 cut(s)	109, 213, 410, 479, 724, 941, 1003
HgaI	GACGC	2 cut(s)	407, 765
Hin1II	CATG	6 cut(s)	12, 290, 307, 374, 854, 965
HindIII	AAGCTT	1 cut(s)	923
HinfI	GANTC	8 cut(s)	26, 44, 144, 160, 293, 379, 475, 947
HpaII	CCGG	7 cut(s)	109, 213, 410, 479, 724, 941, 1003
HphI	GGTGA	2 cut(s)	155, 246
Hpy166II	GTNNAC	3 cut(s)	210, 368, 933
Hpy188I	TCNGA	7 cut(s)	43, 88, 159, 405, 792, 817, 838
Hpy188III	TCNNGA	3 cut(s)	472, 479, 586
Hpy8I	GTNNAC	3 cut(s)	210, 368, 933
Hpy99I	CGWCG	2 cut(s)	401, 759
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	2 cut(s)	830, 937
HpyCH4V	TGCA	5 cut(s)	96, 785, 850, 912, 933
HpyF3I	CTNAG	4 cut(s)	323, 573, 636, 888
Hsp92II	CATG	6 cut(s)	12, 290, 307, 374, 854, 965
Kpn2I	TCCGGA	1 cut(s)	478
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	4 cut(s)	417, 834, 856, 886
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	2 cut(s)	191, 599
MaeIII	GTNAC	3 cut(s)	670, 704, 853
MboII	GAAGA	4 cut(s)	377, 658, 805, 1000
MhlI	GDGCHC	3 cut(s)	199, 346, 935
MluCI	AATT	6 cut(s)	37, 531, 562, 581, 913, 1041
MlyI	GAGTC	2 cut(s)	138, 388
MmeI	TCCRAC	1 cut(s)	111
MroI	TCCGGA	1 cut(s)	478
MseI	TTAA	2 cut(s)	579, 729
MslI	CAYNNNNRTG	1 cut(s)	960
MspA1I	CMGCKG	2 cut(s)	847, 907
MspI	CCGG	7 cut(s)	109, 213, 410, 479, 724, 941, 1003
MspR9I	CCNGG	3 cut(s)	109, 724, 984
MvaI	CCWGG	1 cut(s)	984
MvnI	CGCG	1 cut(s)	338
NciI	CCSGG	2 cut(s)	109, 724
NlaIII	CATG	6 cut(s)	12, 290, 307, 374, 854, 965
NlaIV	GGNNCC	4 cut(s)	196, 197, 244, 343
NmuCI	GTSAC	1 cut(s)	853
NspI	RCATGY	2 cut(s)	290, 854
PciI	ACATGT	1 cut(s)	286
PfeI	GAWTC	6 cut(s)	26, 44, 160, 293, 475, 947
PkrI	GCNGC	4 cut(s)	432, 846, 849, 876
PleI	GAGTC	2 cut(s)	138, 387
PpsI	GAGTC	2 cut(s)	138, 387
PscI	ACATGT	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	982
PspFI	CCCAGC	1 cut(s)	903
PspGI	CCWGG	1 cut(s)	982
PspN4I	GGNNCC	4 cut(s)	196, 197, 244, 343
PspOMI	GGGCCC	1 cut(s)	195
PspPI	GGNCC	4 cut(s)	195, 196, 242, 300
PstNI	CAGNNNCTG	2 cut(s)	65, 847
PvuII	CAGCTG	2 cut(s)	847, 907
RsaI	GTAC	4 cut(s)	139, 312, 369, 1023
RsaNI	GTAC	4 cut(s)	138, 311, 368, 1022
RseI	CAYNNNNRTG	1 cut(s)	960
SaqAI	TTAA	2 cut(s)	579, 729
SatI	GCNGC	4 cut(s)	431, 845, 848, 875
Sau96I	GGNCC	4 cut(s)	195, 196, 242, 300
SchI	GAGTC	2 cut(s)	138, 388
ScrFI	CCNGG	3 cut(s)	109, 724, 984
SduI	GDGCHC	3 cut(s)	199, 346, 935
SfaNI	GCATC	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	960
Sse9I	AATT	6 cut(s)	37, 531, 562, 581, 913, 1041
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	2 cut(s)	191, 599
StyD4I	CCNGG	3 cut(s)	107, 722, 982
TaaI	ACNGT	2 cut(s)	830, 937
TaqI	TCGA	6 cut(s)	101, 142, 291, 330, 754, 1028
TasI	AATT	6 cut(s)	37, 531, 562, 581, 913, 1041
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	6 cut(s)	26, 44, 160, 293, 475, 947
Tru1I	TTAA	2 cut(s)	579, 729
Tru9I	TTAA	2 cut(s)	579, 729
TseFI	GTSAC	1 cut(s)	853
TseI	GCWGC	4 cut(s)	430, 844, 847, 874
Tsp45I	GTSAC	1 cut(s)	853
TspDTI	ATGAA	4 cut(s)	320, 543, 645, 939
VneI	GTGCAC	1 cut(s)	931
XapI	RAATTY	3 cut(s)	562, 581, 1041
XceI	RCATGY	2 cut(s)	290, 854
XspI	CTAG	2 cut(s)	191, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.