Rh7BG264600

Ribosomal protein L35

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003348
Physical Location & Seq
Forward (+)
24172258 .. 24178009
5752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG264600.1

Sequence Viewer

Length: 495 bp
ATGATGCAGCGATTATGCTCCAAGCTTCGCTCTTTACCCTTACAATCAGCCCACAAGACTCTACCATCTCTCTCCTTTTCCTCTTCCTTGCTTCGATCTTCTCGCCCTCTTCATTTCGCCCACACATGGAGCTCAACGTCCCTCTTCAATGCCCATTCACCAACCCAACCTTCACTGCTCCTCGCCTCTCTTCGCTCTTCAACATTTCCCATCTCAATGGTTCAAGTGCGGCATGTTTCGTCAAGCGAGCGTAAGAAGAGGAGAAAGCCAATGACACCAGTTACTTCCAAGATAAAGAAATACAAAATCAAGGGTTACTCGTCTTACAAGTCCCGGTTTAAGTTATTGAATGATGGCACTATTCGACGCTGGAGGGAGGGCAAGCGGCACAATGCACATTTGAAGTCGAAGATATCCAAGCGTAGACTGAGACTACCTGCCCTCGTCCATCCTGCTTATGCCAAAGTGATGAAGAAGCTCAATTTTTGCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L35p

Protein Analysis

164

Amino Acids

18.88

Weight (kDa)

11.88

Isoelectric Point (pI)

66.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L35p PF01632 101 - 160 1.7e-14 Ribosomal protein L35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 445
AccI GTMKAC 1 cut(s) 424
AciI CCGC 2 cut(s) 229, 385
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 5 cut(s) 148, 201, 224, 349, 403
AjuI GAANNNNNNNTTGG 2 cut(s) 154, 186
AluBI AGCT 3 cut(s) 25, 132, 478
AluI AGCT 3 cut(s) 25, 132, 478
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 424
ApeKI GCWGC 1 cut(s) 7
AspLEI GCGC 1 cut(s) 491
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 1 cut(s) 150
BanII GRGCYC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 19
BccI CCATC 4 cut(s) 73, 218, 347, 456
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 424
BfuAI ACCTGC 1 cut(s) 445
BisI GCNGC 3 cut(s) 8, 230, 386
BlsI GCNGC 3 cut(s) 9, 231, 387
Bme1390I CCNGG 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 391
BpuMI CCSGG 1 cut(s) 334
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 278
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 1 cut(s) 278
BseRI GAGGAG 2 cut(s) 170, 274
BseXI GCAGC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 334
BslFI GGGAC 2 cut(s) 124, 316
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 424
BsmFI GGGAC 2 cut(s) 124, 316
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 95
BspACI CCGC 2 cut(s) 229, 385
BspCNI CTCAG 1 cut(s) 420
BspMI ACCTGC 1 cut(s) 445
BspQI GCTCTTC 1 cut(s) 202
BsrI ACTGG 1 cut(s) 278
BssMI GATC 1 cut(s) 95
Bst6I CTCTTC 6 cut(s) 88, 114, 149, 195, 202, 251
BstC8I GCNNGC 2 cut(s) 248, 383
BstDEI CTNAG 1 cut(s) 428
BstF5I GGATG 1 cut(s) 448
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 1 cut(s) 98
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 19
BstXI CCANNNNNNTGG 1 cut(s) 217
BtsCI GGATG 1 cut(s) 448
BtsI GCAGTG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 173
BveI ACCTGC 1 cut(s) 445
Cac8I GCNNGC 2 cut(s) 248, 383
CfoI GCGC 1 cut(s) 491
CseI GACGC 1 cut(s) 375
CviAII CATG 2 cut(s) 126, 233
CviJI RGCY 5 cut(s) 25, 50, 132, 268, 478
CviKI_1 RGCY 5 cut(s) 25, 50, 132, 268, 478
DdeI CTNAG 1 cut(s) 428
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
Eam1104I CTCTTC 6 cut(s) 88, 114, 149, 195, 202, 251
EarI CTCTTC 6 cut(s) 88, 114, 149, 195, 202, 251
Ecl136II GAGCTC 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 134
Eco32I GATATC 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 132
EcoRV GATATC 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 134
FaeI CATG 2 cut(s) 129, 236
FaiI YATR 4 cut(s) 16, 127, 234, 459
FaqI GGGAC 2 cut(s) 124, 316
FatI CATG 2 cut(s) 125, 232
FblI GTMKAC 1 cut(s) 424
Fnu4HI GCNGC 3 cut(s) 8, 230, 386
FokI GGATG 1 cut(s) 435
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 8, 230, 386
GlaI GCGC 1 cut(s) 490
GluI GCNGC 3 cut(s) 8, 230, 386
GsuI CTGGAG 1 cut(s) 391
HapII CCGG 1 cut(s) 334
HgaI GACGC 1 cut(s) 375
HhaI GCGC 1 cut(s) 491
Hin1II CATG 2 cut(s) 129, 236
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 1 cut(s) 58
HpaII CCGG 1 cut(s) 334
HphI GGTGA 1 cut(s) 150
Hpy166II GTNNAC 1 cut(s) 425
Hpy8I GTNNAC 1 cut(s) 425
Hpy99I CGWCG 1 cut(s) 369
HpyAV CCTTC 1 cut(s) 180
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 7, 395
HpyF3I CTNAG 1 cut(s) 428
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 2 cut(s) 129, 236
HspAI GCGC 1 cut(s) 489
Kzo9I GATC 1 cut(s) 95
LguI GCTCTTC 1 cut(s) 202
LmnI GCTCC 3 cut(s) 23, 129, 183
LpnPI CCDG 5 cut(s) 291, 347, 355, 450, 465
Lsp1109I GCAGC 1 cut(s) 19
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 2 cut(s) 280, 314
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MboII GAAGA 9 cut(s) 75, 90, 101, 136, 182, 189, 268, 421, 484
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 1 cut(s) 481
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 9 cut(s) 91, 117, 152, 191, 196, 252, 366, 370, 452
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 215
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 334
NciI CCSGG 1 cut(s) 334
NdeII GATC 1 cut(s) 95
NlaIII CATG 2 cut(s) 129, 236
NspI RCATGY 1 cut(s) 236
PciSI GCTCTTC 1 cut(s) 202
PkrI GCNGC 3 cut(s) 9, 231, 387
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 215
SacI GAGCTC 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 202
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 3 cut(s) 8, 230, 386
Sau3AI GATC 1 cut(s) 95
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 334
SduI GDGCHC 1 cut(s) 134
SetI ASST 6 cut(s) 27, 134, 140, 172, 439, 480
SmiMI CAYNNNNRTG 1 cut(s) 215
Sse9I AATT 1 cut(s) 481
SsiI CCGC 2 cut(s) 229, 385
SstI GAGCTC 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 332
TaiI ACGT 1 cut(s) 140
TaqI TCGA 3 cut(s) 94, 364, 407
TasI AATT 1 cut(s) 481
TauI GCSGC 2 cut(s) 232, 388
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 1 cut(s) 180
TseI GCWGC 1 cut(s) 7
TspDTI ATGAA 2 cut(s) 101, 485
TspRI CASTG 1 cut(s) 180
XceI RCATGY 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.